spint2 (LOC108277494)


Basic Information

Item Value
gene id spint2
gene name LOC108277494
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10413292 ~ 10426287 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924136.2
GGAAGTGAACTGCTGGTAAGTGGAGCGGAAGACACCTGTGTGAATTACACGCACATAGATTTGTAACTGCGACGAAAGCGACTCTTACTGTCCAGCAGATATAAACTGGGCCATGGCTCGGTTGTTTCTTTTAGCTTTTGTGTGCCTTTCTGGCGCAGGATTAATTCTCGGGCAGGAAGGATGTGTATTCACCGAGCTGAACCAGGGCTTGAACCCGAAATCCTGGGACGCTGGTGCGAACTATTCAGCTCACCTGGCCGACATTTCCAACGAGCGTGAGTGTCAAGAGGTTTGCTGTACTAGAGAAGACTGCCACTTAGCCCTGATTGAGACTCCAGCTGATGGCTCACCCCAATGCTTCCTCATCAACTGTATGAAAGATGGCaaagatgtttgtgttttggaagCGCGCGACCACTCCAAAGCATACCTCAAGACTCAGGTCTCAGCCCGCGCCAACAGCTCAACAGATTATTGCCGTCTTGAAAAACAAGTAGGTCGTTGCCGGGCATCCTTCCCCCGATTCTACTACGATGCCACTGACCAAACctgtaaaatgtttgtgtatgGGGGATGTGAAGGAAACAGCAACAACTTCAAAACAAAAGAGGAATGTCAGAATGCTTGTAATGGCGTAacagCTAAATCTTCTGAAGCTCCCTTGGCTGAAATGACATCAGAAGAGTATGCAGAGAAGTGTCTGGCTGGACCACAGGTAGGGCCATGCAGGGCCTCAATCCCACGCTACTACTACACAAGCGGCACATGTAAACCGTTCAGATATGGTGGATGCCGTGGAAATAAGAACAACTATAACTCTGAGGAGGAGTGCATGAAAAACTGTACAGTGAAAATTGTGGATTCCAAGAAAACACCTGAAGATGAGAGATATGCGGCCTGCATTGCGCCGGCTGACTCTGGGCCATGCCGTGCCGCTTTCCAGATGTTCTACTTTGAGCCGAGTACTCAGTCTTGCCAGGAGTTCATCTATGGAGGCTGCAAAGGCAACAAGAACCGTTACAGCACCCTGGAGGAATGCATGTCCAATTGCGCTGGGAAAGATGGGGTATTTGAGGAGCATGGACACCACAGGGCTCGCTGGACTCCAGccTTTTTCCTGGTCGCCACTCTGGCCATCATGTCAGTCGTGCTGCTTGTTGGGTTGTTCCTGATCTCAGTGCGTCGTGTGAAGCATCAGCGCCTCCTGCTGCTGGATGACAAGCAAGAGCTACTACCTGAGGAGCACATTCCTGAGGAGGACGTCCGCAATGACTCCCACTAAatccttttccttctctctttcccctcTCTGCTACTGAGCACCTATATATCTACACTCCGATATCTGCACTACACACAGCCTGTCGCACACATCTGGGGTTTGGGAAAGCTTTGAGAAGGTAGGGCATTAGTACAAAGGCAGAATATTGGACCCAGTGGTTATAAGTATTTGgcaaaaatgtactgtataggTGAAACTACACTGACATACCAGCTTTAATCAGATTCATTATGTATCATGCAAGAGAGATGAGCGATTGTGATTGTAGATGATGATTAGTAGttctttaaaacactgaaactttGAGTGAGAAACTTAGTCTTCAACTGTTTTTTTAGTGATGGAGAAAAATGTGGTAACATtcctttctctttgttttattttttatagtataaaacaaaaatcagcaaatgagcaaataaatttaatttcatttgctCATTAGAATATAGTTTCTTCAAAATAGTTACCTTGGCATACTTTGGAAAATGGACAGATTTTTAGAAGGTTCATTAATGCATTCCCTCATTCCTGTCTCGATGTGTGTACACTAAAATACAAATggattttctatttttcctttttaatttattctacCTGTTGATAGAACAATCATTTTGGGTGATTACATATATGTGATATATCCTTCTGCATAAATATTCTTAGAATAAGtggcttttttcatttttcttttaaataaagtgaaactTATTTAAACAGAATTAACAGCCAATGTTGTACAATGTGAAAGATAATGTGGACAAAGTAGTGTGATTATATAGGACAACTCTCTTTAGTTGATGGTACACTCCacttatttcagattttctacTGAAgataaaacagcacaaaaagattaaagattttaagagttaaagattaaaatatattagaaGATTAATTATCTGACTAGTATGAAACATAATAGTGGATTCTTAGCATATATATGTGATGTTTCTCACGCAAAGTGAGATGGATAACTACAATGGTTGAACTACTGAATGTGTCAAGCACACAGAATCTCCTTTGAACTGGAAATGGAGACATTACTTTGAAGTTAGCaatctataataataaagaaaacactTGACTTAA

Function

NR:

description
kunitz-type protease inhibitor 2-like

GO: NA

KEGG:

id description
K23421 SPINT2; Kunitz-type protease inhibitor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924136.2 True 2377 mRNA 0.42 8 10413292 10426287

Neighbor

gene id symbol gene type direction distance location
plekhg2 plekhg2,LOC106612677 coding downstream 13031 10357549 ~ 10400261 (-)
il15l NA coding downstream 56560 10345590 ~ 10356732 (-)
supt5h supt5h,LOC107657557,LOC107586261 coding downstream 70407 10320831 ~ 10342885 (-)
tnfaip1 tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792 coding downstream 194921 10211586 ~ 10218371 (-)
sgsm2 sgsm2,LOC108277483,LOC107728220 coding downstream 204321 10163407 ~ 10208971 (-)
si:dkey-182i3.11 LOC108277482 coding upstream 56864 10483151 ~ 10488560 (-)
ckmb ckm,ckmb,LOC107690449,LOC107601735 coding upstream 113282 10539569 ~ 10542916 (-)
ercc2 ercc2,LOC107743694,LOC107601732 coding upstream 134270 10560557 ~ 10570176 (-)
zgc:154093 LOC108278387 coding upstream 146348 10572635 ~ 10574319 (-)
zc3h4 zc3h4,LOC107601737,LOC107743691,LOC106580865 coding upstream 158552 10584839 ~ 10596711 (-)
G223766 NA non-coding downstream 612 10412456 ~ 10412680 (-)
G223676 NA non-coding downstream 249920 10161783 ~ 10163372 (-)
G223449 NA non-coding downstream 312126 10100959 ~ 10101166 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding downstream 323302 10089643 ~ 10089990 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding downstream 331175 10081581 ~ 10082117 (-)
G223808 NA non-coding upstream 134139 10560426 ~ 10611848 (-)
G223827 NA non-coding upstream 209869 10636156 ~ 10636794 (-)
G223855 LOC108277744 non-coding upstream 330211 10756498 ~ 10761733 (-)
G224086 NA non-coding upstream 643397 11069684 ~ 11069958 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 679284 11105571 ~ 11168668 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 100776 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 700233 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1466393 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1934380 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2949793 7392415 ~ 7463499 (-)
appbp2 appbp2 other upstream 281965 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 761963 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1962579 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 2008919 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 2494676 12920963 ~ 12999031 (-)

Expression


Co-expression Network