gemin4 (gemin4)


Basic Information

Item Value
gene id gemin4
gene name gemin4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11017152 ~ 11023330 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924212.2
GATGCGGAAGTATGTACAAAAGTCTCTGCTTTTGAACGCTCAGTCCGCATGACAGAATTGTAGCGGTAAATAACATATGCATCAGTCTCACAGAGAAAATAGACAGTTAAAATCATAGTCTTATAGGTTATAGGACGTATAGGTGTGGTTTAGTAccgcagtgttttatttacactGCAGTCGGGACGCACGTTGCCAGATAATCTGCAAGAAATTAACACATGgtctgattttttccccccaaagtTCCAAGCTAAGCAATGACGGACCAAGAGTCCTGGCTGAACTGTGAGAAGACTGCTGTCTTGCAGGGAGGATTTCTGCTGGCAAATCAGTTATGCCAGCCAGAGCCTCTGTCCGCATTGAAAAAAGAGGACTGGAAACACATTGGACGCCCTATTGTTCAGGCCGTCACCGAAGTATGTGGACAGTTGTGTGTAAACAACCATGAGAGGCTTCACTGGAGAAAGAGGATTCTGTGCATTCTATGGAGCAAAATTTTGGAGAATGAGAAAGGGGAGGATATTGATATCAGATGGAGGGAAGATCCATTATTTGCCTTTCAGAATAGCCTCCCTGATATTAATCATACAGTAATGTTTGAACTGATCAAATCCATGGGCTTCTTCAGCATCTATGTTGAGTTGTTCTATTGCTTTGAATCGGTCCAACAGTGCACAGAGCTGGAGAGATTAGTGAAACATGTTACAAGGGACAGCACAGAAGCTGATGTGAAATTCTTGCTGGATGTGTGGTGGGAGCTGTtcaaaggaaggaaagaaacaaaggaCAAGCTAGACCAAATCTTTACTGCCCAGTGTGTCCGTTTCACAAAGACCCCCCCTGACTGCTCACCACAAGCTTCAAAACGATTTAAACCTGACCCAGATTTGGACGTGTCCACCACATGCATAATGTCCATCCTATTTCAAGGACTGAAGGACATAAAGGATACAATAACGTCATCTGAGATATGTTATTTTGCTCTCTCCAACTGCCTAGACATGCTGTACACCTTCTATCTGTTGAACCATGAAACAGACATCCCAGCTGAAGTCAAACTTCAAAACATTGCTCGCTCAGTAAGCCTGCGAAAGAGAAATAATACTTTGGAAGGGGTTGATCTTATTCAGGCTATACGTGAGTCTCACAGAGATTTTGCTGCTATACTCACTCCTGCTGAGAGCAAGCCATGTGGAATTACACTGATCAAAGCCATGGACACAATACTTGAAGTAATACGTGTGTGGGAAAACAGAGGGATACTGAGGCCCACTAATGACCCGAGTGCTTTAACAATCCGTCTCAAGGATAGTCTGGGCAGAGTTCTCAAGTCTTTGGAAGTCCAGTCTGGGAACCAGGGGGGAAATGAACAGACGGTAAATAGTTTGAAAAGAACTTTGGAAGATTTGCTTGCATCCTTTTCTTTTAATGTGCCTGAAAGTCCATCAGATGAAATAGCAAGTGTTGCCATAATGATCATTGACAGCAATCTGAAGGGTTTTGAGGATCTTCCTAAACTTTTTGCCTCCAAACTGAGCCAGACTTTCAGTGATACAGAGTGGCTAAACTGCCTTGAGAGAAACAAAGGTGCATTTCAGAAAAAAGAACTTGTCATGGCCTTGGTCTCTTCTCTTATATCCAAATGCCAAAGCGATGCCGATGTAAAATACTGCAAAAAGCTCAAGGATATTGTTGTGGAAATATTTTCCCAGCTGCCTTTACCAGACAAGAATGCAATTCTTTCTCAAATTCTTACCTTATCAAAGAAAGGTTTGCATGGCTGCCTTCCAAGCTCTGTAACAATAGGCTATGATGAGGAGCTTAACCTGGCTTTTAACTGCATCATTCAAGGTGAAGCAAAAAGCAGCCTGAGCTCAGCCATCAATGCTGTGGCTCGCGTGGCCTTCCAGAACCCTGAGGCCACCATGCACCGGTGCTGCCACATGGCTGTGGTGAACCTTGGTGCTCATACTCTCCTTGCTCAGATTCTCCAGCAGCTTTCTGGACTTATGAGCACACCAAGGGACCCAAGTGGGACAAGAAACAAAGAATACAACTTGTTATGCAGATGCCTGCAAGATACTATGTGGAACAAACTCTCTTCACCTCAAGAGGAAGACCAGTTTCTTTGTTTCCTGTCAGCATTAATGGAGTCCAACATTACTGGCCAAAAGGGAGAAGAACTATGCTTCCTCCTACCAGAGGACATTGTACATGCTTTTGTCTTACCTTACCTATCCCTTTCATGCCCCCAACCTTGCAGACTTGAAGTGTGCCTTCAACTTTTCCAGTCGGCTTTGGCCCGTATATCCAAAGATGATGATACACACTGGATAATGAACTGCTCCCCATTTGCGCTCCTATACTGTCTTGCTCAGCTTTTGAATAATTGCAGTAAGTGCTGGGAGCAACAATTAGAGGGAGATATTGGTTTATCTCTTGAATCCAAAGAACTGTTGATCTCCATTGTGACCACAATGGGCAAGGCAGTTGGCAAGGAAGTGGCTCTGGCTCCTAATACTTGGTCCAGAGCAATTTCTTGGCTTTATGCGAAAGTGGAAGAAGTTGACTGGACTGTCCGCATTCACCTAAAAGAAGTGTGGGGAGAGCATTTCAAATATGAAGTGCCAAGCTCTCTCATGGCTGTATCTGAGCTTTCTGAGCAGGAGTGGTGTGGACTGGTGTTGCCTCACTATGGTCAAGGCACTGGCCTGTTGGCCTGGATTGAATGTTGTTGTCTCTCAGATCACATTCAGGAAATAATGCTGGACTCCCTATCTCTAAACTTGCTCAACCCAGAGGAAGTAACCATGTTCAGTAAAGGCCTGCTGGTGGCAGTGTCTCAGGTTCTCCCCTGGTGCACAGTTGGCGAATGGCAGCGAATACTGAAAGTGTTGCATGAACTCCTACAGTCAGATAAGCTTCATGTACCATACTCCCTGGAATATGTGGACTTCCTCCCATTACTTGACCTTCGTTCTTTTGCTCACGACTTGCAGGTGTCTGTGTTCCTGCTGCGTAtgtttcagctgctctgtggCTCCAGCTGTGCAGGGTGGCTGCCTCCCCAAGGCTGGGCACATGTAGGCCGGCTCTGTGCTACTGCCATGAGGGGCATCATAGACTCTGTGAAGAACAAAGTGCCACTACAATCCACTACTACCTCCCCTAAAAACCCCATAATGAGTAGTGGAAATCTTTGTCAAGAGGTCCTGTTTGTGCTGACTCAGCTGTTCTGTCATGTGCTACACATGCAGGTGATGATGCCTGGACAGCCAGAGCCTTTGTTTCTGTGTGCACTGGACATTCTTTCCCACTATGAAGCAGTACTGTCTGCATACCCCAAGAGTAGCACTGCCCTACAGGTAGCCAATACACGCCACTTCCTTACCACCATTACAGACAATCTGCAGTGCACAGACATGAGAGCTGTCCTGCACCAGAAGATTGCTCAGCTATGAGGATAAAATGGCAAATTAATGTTattgatttacaaataaatctctTTAGCTCTTCCATTCACCCTCACAATAAAAAGCTATTAGGACAGCATTTGCTTGTCTCTTGTTAATTGACTTGGGAgatgataaaaaaagaacaaagaaccTTAAAACATTTTAGTTAAATCCTCAATGTTGAGACTTCAGTTACATTTTTCAACTGTAAATGGGATCATAAATTAAACTACAAATTAAACTGTGTGAAATGGAACCATAAAATCAGTCTTTTATTTAAGTTTATCTTTTGATTTGGTATTGTCCTTATGGCAGTTGTAAATAATGCCTAGAGATCTTTACAGGTACCAGGTCCCTAATATTTTACCCACAAAATTAAGTGAAATTAATCATCGTAGGCATTCATTTTATAATGTAGACCACAAAATGGTGTATTGTATATCTAATGAATTTGTGACCAAATTCATTAGTTATAGTATATGACAGCAGTACCCCTACACTTGGAACCCCTAGCAATCAGACTATACTTTACAAAAGTATAAATGACaattctggggaaaaaatgaactTCTGGGTAGTGGTCATAATTTGAACCATGTCCCAGATGAAAGGGATCTACCTGAAACTAACTGAAAAATTTCTAAGACACTGCACATTGTACTGCATCTTAACAGATTGAGGCATGGCTAAACAAATTAATTCCACaataaaactgtcaaaatgATTTCCATTTCATAAACAAATGGTATGTATAAAGAGGCGTGTTTTTCAATGAAAACTATATCTTCTACCCTGATTTGCTATGCAAATATTCACCaagaacatattaaaaataaccttCATCTAGGGATCCTCGAAATGAGGAACGTGCCTGTCCCAAATGACCTTAAGTCAATTGGGACACATTTAATTGAATTTGGTCCCTGAAAATGCTAACCCAGCAAAGGCAATGATAAGAACATGGGTGTCCTTGTGGACACTGTAAATCATTAGGTCCAAATACAAGAAAGGTTTTTAATTCTATATGTTCACTTAATTCATGAGTTTGGACCATTTGAAATGATGTAACTTGACTTACCCCCAGCATTCACGTTCAACTTTGTAAAAGGGTAGAAATCACTTGCAGGCATCTATTaaacatgactttttaaaatattatgtatCAGTCACATATTTTCAGTCAAAGCTAAATTAACTTGTTTCTAATTTGTCAGTGCAGATAGTTGTTTTTGCTTCCCATAATGTTTACGTACTTAATCACAAGTCACTATGAGTTCTATCTATAAATACTCTACACAAATTACTCACACATTTTACAGTACGAGTACAATTTTACATCCATTAGTccaatgttgtgtgtgtgacaccaTTAATAAGCAGACAAAATGTGTGCTCTGATCTACTATAAAAATGTCCCCACCCTGTCACATGTGcagaacagattaaaaaaaaaaaactagctaaaATTTATTCAAC

Function

symbol description
gemin4 Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within rRNA processing. Predicted to be part of SMN complex. Is expressed in midbrain hindbrain boundary neural rod. Orthologous to human GEMIN4 (gem nuclear organelle associated protein 4).

NR:

description
PREDICTED: gem-associated protein 4-like

GO: NA

KEGG:

id description
K13132 GEMIN4; gem associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924212.2 True 4934 mRNA 0.42 2 11017152 11023330

Neighbor

gene id symbol gene type direction distance location
pipox pipox coding downstream 179024 10826289 ~ 10838128 (-)
usp32 usp32,LOC108425843 coding downstream 323881 10651351 ~ 10693271 (-)
si:ch211-167j9.5 LOC108277907,LOC107734097,LOC107690468 coding downstream 365942 10642238 ~ 10651210 (-)
tmem97 tmem97 coding downstream 376119 10639861 ~ 10641033 (-)
rad1 rad1,LOC107601739 coding downstream 381327 10632864 ~ 10635825 (-)
tmem199 tmem199,LOC107592604 coding upstream 41271 11064601 ~ 11068228 (-)
trarg1a tusc5 coding upstream 150672 11174002 ~ 11185519 (-)
abhd15a LOC108278383 coding upstream 212310 11235640 ~ 11243992 (-)
exo5 exo5 coding upstream 250433 11273763 ~ 11279974 (-)
rflnb rflnb coding upstream 258001 11281331 ~ 11284623 (-)
G223855 LOC108277744 non-coding downstream 255419 10756498 ~ 10761733 (-)
G223827 NA non-coding downstream 380358 10636156 ~ 10636794 (-)
G223808 NA non-coding downstream 405304 10560426 ~ 10611848 (-)
G223766 NA non-coding downstream 604472 10412456 ~ 10412680 (-)
G223676 NA non-coding downstream 853780 10161783 ~ 10163372 (-)
G224086 NA non-coding upstream 46354 11069684 ~ 11069958 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 82241 11105571 ~ 11168668 (-)
G224358 NA non-coding upstream 371390 11394720 ~ 11397828 (-)
G224360 NA non-coding upstream 400231 11423561 ~ 11423868 (-)
G224361 NA non-coding upstream 401299 11424629 ~ 11424859 (-)
appbp2 appbp2 other downstream 295819 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 704636 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 1304093 9677259 ~ 9713059 (-)
G222809 oaf other downstream 2070253 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2538240 8404829 ~ 8478912 (-)
aipl1 aipl1,LOC106612843 other upstream 164920 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1365536 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1411876 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 1897633 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 1917580 12940910 ~ 13007559 (-)

Expression


Co-expression Network