wsb1 (wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796)


Basic Information

Item Value
gene id wsb1
gene name wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 13070136 ~ 13080860 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924224.2
GTGTAGCGGCCATTATAATCCAGTGTGTATAGGCGTAGCCTCTCATActgctgagagaaagagaggcgcTGACAGGATATACGTGTtcgattttttttgtttatgttttgcctTTACGCAGTTTTAACGCTCGAGTTTGCGTTATAGGGAGTTTAACGGCTGTGCAGACTTGGTTATattagtatattttatatatctgtAGAAGTGAggtgttaattgtgtgtgtgtgtgttcagtggaGTGCTAGTCCTGTTGTGAGCCAGCGCGCGCGCTCCAGCCCACTGAGAGGGTTTCATCAGCCGTCTTTCACCACACATTATAATCCCTTCATCTAAGAGGCGTTCTTTAAAGAGTCTTGTTAGTATTTAGATGGCAAGCTTCCCAGATTTTGTCAACGAAAATGAAATAGCTAAAGCTAAGTTCATTGGAGAGCTTTTAGCTCCTGTGGCTCCCTTTGACCAGAAGTCTGGACGGGAGACATGGACTGTGGCTTTTGCTCCTGATGGTTCTTATTTTGCTTGGTCTCAAGGACACCGCATCGTACGGCTCGTACCATGGTCAAAATGCATGAGCAATTTCTCTATGAGGAAAGAGGAGTGGCTAAATGGCGCTGGACCCAGGCATTTGTCTCGGCAAGGTAGCGACAGTGCTCTGGTCCCTGGTGAGCCCAGAGAGCACACCATCGACTGCGGTGACATCGTTTGGGGGCTGGCATTCGGTTCCTCTGTTCCTGAAAAACAGAGCCGCTGTGTGAATATTGAGTGGCACAGATTTAAATTCGGCCAAGACCAGTTGCTGCTGGCTACCGGCCTCAACAACGGTCGCATCAAGATATGGGACGTGTATACAGGAAAACTTTTGTTGAATTTGATGGATCACACAGACATTGTGCGGGACTTAACGTTTGCTCCAGACGGCAGTCTTGTGCTGGTGTCTGCTTCCAGAGACAAGACATTGCGTGTGTGGGACCTCAAGGACGATGGTAACATGATGAAAGTGTTGCGTGGACATCAAAACTGGGTGTACTGCAGTGCCTTCTCCCCAGACTCCTCAGTGCTGTGCTCTGTGGGTGCTGGCAAAGCGgtgttcctgtggGACATGGATAAATACACTCTGATTCGTAAGCTGGAGGGCCACCATAatgatgtggtgtcctgtgagTTCTCTCCTGATGGAGCCTTGCTGGCCACAGCCTCCTATGATACTCGCGTCATAGTGTGGGATCCTCACACGGCCACCGTACTGCTTGAGTTGGGGCACCTCTTCCCTCCTCCTTCTCCCATATTCGCAGGGGGAGCAAATGACCGCTGGGTTCGCTCTGTGGCTTTTTGTCATGATGGCCGCCATATTGCCAGCATCACTGATGACAGGTTGGTGCGATTTTGGAGCATTGATGAGAAATCTCCCCAGGCCATCGCCTCACTCACTAATGGCCTCTGCAGTGCCTTCTCCACAGATGGAAGTGTTTTAGCTGCTGGTTCACGCGATGGAAGTGTTCATTTCTGGGCTTGTCCACGCAGCGTTGCCAGCCTGCAGCACTTGTGCCGCATGGCATTGCGAAGAGTGCTGTCTACACAGCAAGTCTACGCACTGTCTATCCCTCAATGCATGCAAGACTACCTGGCCTACAGGAGCTTCTAGTCGAGGAGGCACACCACAGCACACTGTTGAATCAATAAGACAgactttgtgaaaaaaaaaattggggaaGGGGTGATTGGGgcgtggagaaaaaaaaaaaaaaa
>XR_004579489.1
GTGTAGCGGCCATTATAATCCAGTGTGTATAGGCGTAGCCTCTCATActgctgagagaaagagaggcgcTGACAGGATATACGTGTtcgattttttttgtttatgttttgcctTTACGCAGTTTTAACGCTCGAGTTTGCGTTATAGGGAGTTTAACGGCTGTGCAGACTTGGTTATattagtatattttatatatctgtAGAAGTGAggtgttaattgtgtgtgtgtgtgttcagtggaGTGCTAGTCCTGTTGTGAGCCAGCGCGCGCGCTCCAGCCCACTGAGAGGGTTTCATCAGCCGTCTTTCACCACACATTATAATCCCTTCATCTAAGAGGCGTTCTTTAAAGAGTCTTGTTAGTATTTAGATGGCAAGCTTCCCAGATTTTGTCAACGAAAATGAAATAGCTAAAGCTAAGTTCATTGGAGAGCTTTTAGCTCCTGTGGCTCCCTTTGACCAGAAGTCTGGACGGGAGACATGGACTGTGGCTTTTGCTCCTGATGGTTCTTATTTTGCTTGGTCTCAAGGACACCGCATCGTACGGCTCGTACCATGGTCAAAATGCATGAGCAATTTCTCTATGAGGAAAGAGGAGTGGCTAAATGGCGCTGGACCCAGGCATTTGTCTCGGCAAGGTAGCGACAGTGCTCTGGTCCCTGGTGAGCCCAGAGAGCACACCATCGACTGCGGTGACATCGTTTGGGGGCTGGCATTCGGTTCCTCTGTTCCTGAAAAACAGAGCCGCTGTGTGAATATTGAGTGGCACAGATTTAAATTCGGCCAAGACCAGTTGCTGCTGGCTACCGGCCTCAACAACGGTCGCATCAAGATATGGGACGTGTATACAGGAAAACTTTTGTTGAATTTGATGGATCACACAGACATTGTGCGGGACTTAACGTTTGCTCCAGACGGCAGTCTTGTGCTGGTGTCTGCTTCCAGAGACAAGACATTGCGTGTGTGGGACCTCAAGGACGATGGTAACATGATGAAAGTGTTGCGTGGACATCAAAACTGGGTGTACTGCAGTGCCTTCTCCCCAGACTCCTCAGTGCTGTGCTCTGTGGGTGCTGGCAAAGCGgtgttcctgtggGACATGGATAAATACACTCTGATTCGTAAGCTGGAGGGCCACCATAatgatgtggtgtcctgtgagTTCTCTCCTGATGGAGCCTTGCTGGCCACAGCCTCCTATGATACTCGCGTCATAGTGTGGGATCCTCACACGGCCACCGTACTGCTTGAGTTGGGGCACCTCTTCCCTCCTCCTTCTCCCATATTCGCAGGGGGAGCAAATGACCGCTGGGTTCGCTCTGTGGCTTTTTGTCATGATGGCCGCCATATTGCCAGCATCACTGATGACAGGTTGGTGCGATTTTGGAGCATTGATGAGAAATCTCCCCAGGCCATCGCCTCACTCACTAATGGCCTCTGCAGTGCCTTCTCCACAGATGGAAGTGTTTTAGCTGCTGGTTCACGCGATGGAAGTGTTCATTTCTGGGCTTGTCCACGCAGCGTTGCCAGCCTGCAGCACTTGTGCCGCATGGCATTGCGAAGAGTGCTGTCTACACAGCAAGTCTACGCACTGTCTATCCCTCAATGCATGCAAGACTACCTGGCCTACAGGAGCTTCTAGTCGAGGAGGCACACCACAGCACACTGTTGAATCAATAAGACAgactttgtgaaaaaaaaaattggggaaGGGGTGATTGGGaTGGAGGGGAAATGCAGTGATCTTCTGTTAATAGGCCCCAAGCTGTACTTAATGACATCACTGTTtcaaagtaatttttttttttttgtaagtctTCTAAAGCTGCTTGCACATTTCCTGTCAGTACTCCCCTCCACCCCCTGCTTCCCCCTTGCTAAACTCTAAGCCTTCTCATTTGCTCTCTCAACCATATCAGCTAGTGGCCTTTAGACAGCCTTATCGTCAATGtcactttcttcctttttttctggcACAACTTCTTGTGCAAAAACCTATGGTGCAACTTTCAAGAATGAGACAGCTATAAAGTCCTCTTTCTAGCAGATATGAATGAATGTTAGCAGACCTGAAGTGGTGTTTTCTCAAAAGTATATCTGCAGTGAGTGGGCAGAGGTGATGGAGAAGCGAGAAAGAGAGTTAGACTGAAAGAATTGCATACTTTTTCTACATGTACAGTGGTGTGCGTTTGTGTGAGATG

Function

symbol description
wsb1 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Is expressed in several structures, including digestive system; eye; fin; heart; and spleen. Orthologous to human WSB1 (WD repeat and SOCS box containing 1).

NR:

description
PREDICTED: WD repeat and SOCS box-containing protein 1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10341 WSB1; WD repeat and SOCS box-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924224.2 False 1745 mRNA 0.49 9 13070621 13080860
XR_004579489.1 True 2200 misc_RNA 0.48 10 13070136 13080860

Neighbor

gene id symbol gene type direction distance location
ksr1b LOC108277690,LOC108435810,LOC106603285 coding downstream 8385 13025878 ~ 13061751 (-)
LOC113532896 leg9 coding downstream 46921 13017057 ~ 13023215 (-)
LOC113532897 LOC108278265 coding downstream 57017 13009439 ~ 13013119 (-)
msi2b msi2b,LOC108277875,LOC108425902,LOC108435815,LOC107682662,LOC108276910,LOC107587484 coding downstream 159282 12679407 ~ 12910854 (-)
tbx2b tbx2,tbx2b,LOC107664937,LOC107685069 coding downstream 642928 12419364 ~ 12427208 (-)
cuedc1b cuedc1,LOC107587359,LOC107672109,LOC107746650,LOC107682807 coding upstream 1239 13082099 ~ 13106758 (-)
vezf1b vezf1b,LOC108278304,LOC108425912,LOC107756309,LOC107682824 coding upstream 32040 13112900 ~ 13125942 (-)
zgc:171927 zgc:171927,LOC108278279,LOC108425914,LOC107672095,LOC107588334,LOC107683438,LOC107592930,LOC107757416 coding upstream 52547 13133407 ~ 13138237 (-)
zgc:113149 LOC108278277 coding upstream 57495 13138355 ~ 13144301 (-)
zgc:101731 zgc:101731,LOC108277511,LOC107683430,LOC107757427,LOC108425805,LOC103044784 coding upstream 63505 13144365 ~ 13156080 (-)
G225291 NA non-coding downstream 362761 12706696 ~ 12707375 (-)
G224970 NA non-coding downstream 708043 12360206 ~ 12362093 (-)
G224746 NA non-coding downstream 989057 12080300 ~ 12081079 (-)
G224701 rtn4rl1,LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107592642,LOC107685061 non-coding downstream 1094118 11973919 ~ 11976018 (-)
G224700 rtn4rl1,rtn4rl1b,LOC107744797,LOC107664898 non-coding downstream 1096302 11973382 ~ 11973834 (-)
G225619 NA non-coding upstream 277950 13358810 ~ 13359021 (-)
G225621 NA non-coding upstream 283543 13364403 ~ 13366491 (-)
G225652 slc6a4,LOC106612651,LOC102787906 non-coding upstream 388417 13469277 ~ 13470023 (-)
LOC117599099 NA non-coding upstream 578105 13658965 ~ 13728334 (-)
G225789 NA non-coding upstream 713372 13794232 ~ 13795138 (-)
nf1a nf1 other downstream 62577 12940910 ~ 13007559 (-)
akap1b akap1b,akap1,LOC108278245 other downstream 71105 12920963 ~ 12999031 (-)
bcas3 bcas3,LOC107743646 other downstream 431411 12435206 ~ 12638725 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other downstream 662647 12388866 ~ 12407489 (-)
aipl1 aipl1,LOC106612843 other downstream 1849480 11188250 ~ 11220656 (-)
G225622 NA other upstream 286903 13367763 ~ 13368850 (-)
or121-1 LOC108277640,LOC108413776 other upstream 860062 13940922 ~ 13942617 (-)
abcg1 abcg1,LOC108277612,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC107677096 other upstream 943385 14024245 ~ 14043774 (-)
zmp:0000001236 maml2 other upstream 1406633 14487493 ~ 14536836 (-)
gab2 gab2,LOC107561751,LOC107724943,LOC107593477 other upstream 1459617 14540477 ~ 14590536 (-)

Expression


Co-expression Network