slc47a4 (LOC108278407)


Basic Information

Item Value
gene id slc47a4
gene name LOC108278407
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 12099310 ~ 12108019 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924226.2
CACTCATTTAAAAGTGGACATTAAATGTTTGACTTAGCAATACTGCACATTGTGTTATGGTGGTGCTTTCCTTTCTAAAAAACCTTTTCCTTTCTGGGTGATACGCATGCTGCGGGGAAAAGAGTTCATGCTTGAGCCTTTAAGGGTTGTGAAACCTTGTCCTAGAAGTCAGAGGAATGCACAGCTGCAGCTGAGACACTGTTGCCTTTGGTGAGCTTGGATTTAGTGAGGACATCTGAGTAGATCATGGATGGATCTAACCCCAGAGCTGAAGCTCCTTCAGTGGAGCCCAGTGCCAAACTCTTCTGCTGTCGTTGTGTGAGGCGCTGCCTCCCGCTGGCTTACAGAGAGGAGATCTACCACATCCTGAGGATGACTGGGCCCCTGCTTGTGTGCCGGTTCTTGaatttccttcttttcttcgtGGTCACAATGTTCTGTGGCCGCCTGGGGAACACTGTACTGGCAGGCTATGCCATGGCTTCAGCTACAATAAATGTGACTTCTGCAGCAACTGGATTAGGGCTAACTTTGGCCTGTGATACACTGGTTTCACAGACATTTGGCAGTAAGAACCTGTTACATGTAGGAGTAATCCTGCAAAGGAGCATTCTGATCTTGCTGCTCTTCTCTCTTCCCTGCTGGGGTGTGCTTATTAACACCCAGTCTCTCCTGCTCCTGGTGGGACAAGACCCCGACGTAGCCAGGGTAGCCCAGATTTATGTTGAGGCATACCTTCCTGCTCTTCCAACTTTATTTCTGCACCAGCTGCAGGTGTCTTACCTCCAAAACCAGGGTGTGATTATACCTCAAATGTATGCATCTGTGGTGGCCAATGTTGTGAATGTGCTGAATCACTacattttgctgttttggtGGGATCTTGGAGTACAtggcTCTGCAGCAGCCAATTGTTTGGCTCAGATCGTTTCCTGTTTCAGTTTGTTTGCTTACATTCGCTTTAAGAAACTCCATGTTAAGACGTGGGGAGGCTGGTCCTCAGAGTCACTGCAGGAGTGGGGCAACTACATGAAGCTGGCTATTCCTAGTACATTAATGTTATGCTTTGAATGGTGGATCTATGAAATTGGAGGATTCTTAGCAGGAATGCTGGGAGAAGTCGACTTGGCTGCTCAACATGTGGTTATAATGCTGGCTTATATAAACTACATGATCCCAGCTGGTTTACAAGGTGCAGCTTGTGTGCGTGTGGGTAATGCACTAGGAGCTGGAGATACAGCTGGAGCCATCCTCACTAGCAAAGTTTCTCTCATCTGTGCAGCTGTATTGGCAATCATTCAGGGTGTGGTGCTTGGTGCCACAAAAACAGTCGTTGGATTTTTGTTCACTTCAGATGAGACCATAGCAGAGTTAGTTTCTGAACTCATGAGCATCTACTGCCCCCTTCAATTCTTTAGTGGACTGTTGTGTGTTGGCATGGGCATAGTCCTGGGCACTGGGCAGCAGCGGATTGCAGCCATCGCTAATCTAATTGGATATTATTGTATTGGACTTCCACTAAGTATTGCTCTGACCTTCCCAGCCAAGTTACAAGTCGCTGGCTTTTGGTGGGGCCTTTTTATTGCTGTCTTCTTGCTATCAATCTTTTTCACTGTCATCATCTTCAAATTAAACTGGAAGAAGATAACAGAAGAGGCTGTTGAGCGTGCTGGAAGAGGGAAGAGCAGAGGCGTAATGCTTCCAGAGTTTAGATCCAGTCACCGGCTCTCCGATAGCTTTTTCCTTGCACTCAGTAATTTAGAGCTTCAGAATCAGAATGGCTATATAGCTGTTAGCTCTCAAGATGCGGATGAAGAAGGAGGTACTTCAGTGGCTCAGGAGAGTTTGAAAGAGACTCAGGAAGGaggaatgagaaaagaaaatcaacTCTCCACCTCACAGAAGAGATTGAGAGTGACTCAGGAaggaggaatgagcaaaaaaaatcaactctcCACCTCTCAGCTCATCATCAGGAGAGGGATGACTGCTCTGACTGCTGTCCTTATCCTCAGTATAGGGATGACTGTCCATTTCATCCTGCCTCTGCCTGAGGTGGCTTCCATCACCAATAGCACTTTGGACTTCGAAAACTCGACTTTATCTTCTCCCATTGCCACAGAAATATTATCTTTTTGAGACTGATGGATCCTTGCTGGATAATAATTGATCTTATGTAGTGTATTACCATTATAGTGTATTGACCTTAGTGTCATTTAGACTACCAGGATAGGGAATGTTATATAGACAACTTACTGCTGAATTGTGAGAATGTTATCAATTGACATGAGGTAGAAATACAATGAATTGTAAGTAATACAGCAAAATTGGTTGTTATCTCTCTatctaaacaaaataacatagaaaatatatgaatatgaataatggAATGAACTGCATAGACAAGGAACTAATATTGTCACttgaaataatttattaatatgcaTTTCTGTAACTCTTGAAACATATAACAAGAGACTGTAAACCTACTGTATGTAACATTATACCTTCATGTAGCCTTTTGCAGTCTTCATCACCTGAAGTCAGTGACAGAATGAATGTCCATACAGTAAACTCCCTGTGACTATTAACTCTCTAACGTGGCTTTAGGCCAACTGAGCACATTACTACCGCTTCACTAATACACTTAAAGCAATCCCTACAGCCAGAATAATGAACATAGCCAATAGAGTCAGGCCTCTGCGGACCACCAAGACCCCTAAAGGTAGTGCGCTCCTCGTTGTAGTCAAGTTGGGCAGATTCTCCGCCAGCATCTCTGTTTCAGTGTGAGGGCCTCCATTAGTCAGATCTGCATTGTTAGCCTGCTGTACTGTATCTGCCAATAAAAAGATTCTGTTAATGTGA
>XM_034310662.1
AAATGTTTGACTTAGCAATACTGCACATTGTGTTATGGTGGTGCTTTCCTTTCTAAAAAACCTTTTCCTTTCTGGGTGATACGCATGCTGCGGGGAAAAGAGTTCATGCTAAGTCAGAGGAATGCACAGCTGCAGCTGAGACACTGTTGCCTTTGGTGAGCTTGGATTTAGTGAGGACATCTGAGTAGATCATGGATGGATCTAACCCCAGAGCTGAAGCTCCTTCAGTGGAGCCCAGTGCCAAACTCTTCTGCTGTCGTTGTGTGAGGCGCTGCCTCCCGCTGGCTTACAGAGAGGAGATCTACCACATCCTGAGGATGACTGGGCCCCTGCTTGTGTGCCGGTTCTTGaatttccttcttttcttcgtGGTCACAATGTTCTGTGGCCGCCTGGGGAACACTGTACTGGCAGGCTATGCCATGGCTTCAGCTACAATAAATGTGACTTCTGCAGCAACTGGATTAGGGCTAACTTTGGCCTGTGATACACTGGTTTCACAGACATTTGGCAGTAAGAACCTGTTACATGTAGGAGTAATCCTGCAAAGGAGCATTCTGATCTTGCTGCTCTTCTCTCTTCCCTGCTGGGGTGTGCTTATTAACACCCAGTCTCTCCTGCTCCTGGTGGGACAAGACCCCGACGTAGCCAGGGTAGCCCAGATTTATGTTGAGGCATACCTTCCTGCTCTTCCAACTTTATTTCTGCACCAGCTGCAGGTGTCTTACCTCCAAAACCAGGGTGTGATTATACCTCAAATGTATGCATCTGTGGTGGCCAATGTTGTGAATGTGCTGAATCACTacattttgctgttttggtGGGATCTTGGAGTACAtggcTCTGCAGCAGCCAATTGTTTGGCTCAGATCGTTTCCTGTTTCAGTTTGTTTGCTTACATTCGCTTTAAGAAACTCCATGTTAAGACGTGGGGAGGCTGGTCCTCAGAGTCACTGCAGGAGTGGGGCAACTACATGAAGCTGGCTATTCCTAGTACATTAATGTTATGCTTTGAATGGTGGATCTATGAAATTGGAGGATTCTTAGCAGGAATGCTGGGAGAAGTCGACTTGGCTGCTCAACATGTGGTTATAATGCTGGCTTATATAAACTACATGATCCCAGCTGGTTTACAAGGTGCAGCTTGTGTGCGTGTGGGTAATGCACTAGGAGCTGGAGATACAGCTGGAGCCATCCTCACTAGCAAAGTTTCTCTCATCTGTGCAGCTGTATTGGCAATCATTCAGGGTGTGGTGCTTGGTGCCACAAAAACAGTCGTTGGATTTTTGTTCACTTCAGATGAGACCATAGCAGAGTTAGTTTCTGAACTCATGAGCATCTACTGCCCCCTTCAATTCTTTAGTGGACTGTTGTGTGTTGGCATGGGCATAGTCCTGGGCACTGGGCAGCAGCGGATTGCAGCCATCGCTAATCTAATTGGATATTATTGTATTGGACTTCCACTAAGTATTGCTCTGACCTTCCCAGCCAAGTTACAAGTCGCTGGCTTTTGGTGGGGCCTTTTTATTGCTGTCTTCTTGCTATCAATCTTTTTCACTGTCATCATCTTCAAATTAAACTGGAAGAAGATAACAGAAGAGGCTGTTGAGCGTGCTGGAAGAGGGAAGAGCAGAGGCGTAATGCTTCCAGAGTTTAGATCCAGTCACCGGCTCTCCGATAGCTTTTTCCTTGCACTCAGTAATTTAGAGCTTCAGAATCAGAATGGCTATATAGCTGTTAGCTCTCAAGATGCGGATGAAGAAGGAGGTACTTCAGTGGCTCAGGAGAGTTTGAAAGAGACTCAGGAAGGaggaatgagaaaagaaaatcaacTCTCCACCTCACAGAAGAGATTGAGAGTGACTCAGGAaggaggaatgagcaaaaaaaatcaactctcCACCTCTCAGCTCATCATCAGGAGAGGGATGACTGCTCTGACTGCTGTCCTTATCCTCAGTATAGGGATGACTGTCCATTTCATCCTGCCTCTGCCTGAGGTGGCTTCCATCACCAATAGCACTTTGGACTTCGAAAACTCGACTTTATCTTCTCCCATTGCCACAGAAATATTATCTTTTTGAGACTGATGGATCCTTGCTGGATAATAATTGATCTTATGTAGTGTATTACCATTATAGTGTATTGACCTTAGTGTCATTTAGACTACCAGGATAGGGAATGTTATATAGACAACTTACTGCTGAATTGTGAGAATGTTATCAATTGACATGAGGTAGAAATACAATGAATTGTAAGTAATACAGCAAAATTGGTTGTTATCTCTCTatctaaacaaaataacatagaaaatatatgaatatgaataatggAATGAACTGCATAGACAAGGAACTAATATTGTCACttgaaataatttattaatatgcaTTTCTGTAACTCTTGAAACATATAACAAGAGACTGTAAACCTACTGTATGTAACATTATACCTTCATGTAGCCTTTTGCAGTCTTCATCACCTGAAGTCAGTGACAGAATGAATGTCCATACAGTAAACTCCCTGTGACTATTAACTCTCTAACGTGGCTTTAGGCCAACTGAGCACATTACTACCGCTTCACTAATACACTTAAAGCAATCCCTACAGCCAGAATAATGAACATAGCCAATAGAGTCAGGCCTCTGCGGACCACCAAGACCCCTAAAGGTAGTGCGCTCCTCGTTGTAGTCAAGTTGGGCAGATTCTCCGCCAGCATCTCTGTTTCAGTGTGAGGGCCTCCATTAGTCAGATCTGCATTGTTAGCCTGCTGTACTGTATCTGCCAATAAAAAGATTCTGTTAATGTGA

Function

NR:

description
PREDICTED: multidrug and toxin extrusion protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924226.2 True 2865 mRNA 0.44 18 12099310 12108019
XM_034310662.1 False 2810 mRNA 0.44 18 12099310 12107997

Neighbor

gene id symbol gene type direction distance location
wdr81 wdr81,LOC107562947 coding downstream 34099 12049902 ~ 12065211 (-)
serpinf2b LOC108277904 coding downstream 49979 12044000 ~ 12049331 (-)
rpa1 rpa1,LOC107562955,LOC107548543 coding downstream 58285 12008435 ~ 12041025 (-)
dph1 dph1,LOC107664954,LOC107685060,LOC102789142 coding downstream 281526 11726523 ~ 11817784 (-)
taok1a taok1a,LOC108277908,LOC108425880,LOC107585593,LOC107743657,LOC107664926,LOC107744793,LOC107592626 coding downstream 521814 11549637 ~ 11577496 (-)
pitpnm3 pitpnm3,LOC108277935,LOC108425893,LOC107685064,LOC107664939 coding upstream 5078 12113097 ~ 12174334 (-)
LOC113533058 LOC108277933 coding upstream 96284 12204303 ~ 12265381 (-)
kiaa0753 kiaa0753 coding upstream 159293 12267312 ~ 12286578 (-)
ccdc9 ccdc9 coding upstream 185616 12293635 ~ 12308262 (-)
tbx2b tbx2,tbx2b,LOC107664937,LOC107685069 coding upstream 311345 12419364 ~ 12427208 (-)
G224746 NA non-coding downstream 18231 12080300 ~ 12081079 (-)
G224701 rtn4rl1,LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107592642,LOC107685061 non-coding downstream 123292 11973919 ~ 11976018 (-)
G224700 rtn4rl1,rtn4rl1b,LOC107744797,LOC107664898 non-coding downstream 125476 11973382 ~ 11973834 (-)
G224636 NA non-coding downstream 197788 11901281 ~ 11901522 (-)
G224615 NA non-coding downstream 245728 11853016 ~ 11853582 (-)
G224970 NA non-coding upstream 252187 12360206 ~ 12362093 (-)
G225291 NA non-coding upstream 598677 12706696 ~ 12707375 (-)
G225410 NA non-coding upstream 960767 13068786 ~ 13175992 (-)
G225619 NA non-coding upstream 1250791 13358810 ~ 13359021 (-)
G225621 NA non-coding upstream 1256384 13364403 ~ 13366491 (-)
aipl1 aipl1,LOC106612843 other downstream 878654 11188250 ~ 11220656 (-)
appbp2 appbp2 other downstream 1377977 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 1786794 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 2386251 9677259 ~ 9713059 (-)
G222809 oaf other downstream 3152411 8941018 ~ 8946899 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 280847 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 327187 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 812944 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 832891 12940910 ~ 13007559 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other upstream 962117 13070136 ~ 13080860 (-)

Expression


Co-expression Network