LOC113532742 (LOC108277821,LOC108277480,LOC108277478,LOC108277820,LOC108277479)


Basic Information

Item Value
gene id LOC113532742
gene name LOC108277821,LOC108277480,LOC108277478,LOC108277820,LOC108277479
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9839316 ~ 9866331 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924311.2
CATGTCAGAACCTGTCATTTGCAATGGACCTCATCATGGTGGTCAGGCAGCTCCACATAAGGATAAGGCTACTGTTAGCCtgcttcctctttctttctgtttatggACAAACCTCAGGACCaTATTTCATGGTGACATTTCCTGCAGTAATAGAGTCTGGCTCTGATGCAAAGTTCTGTGTGAGTCTTTTGAAGCCTAATGAGACTCTACAAATGAACATTTATCTGGTTCACGACAATCAGAGCAGAACTCTTTCACAAGAGACAGTGGAAAAGGAGATTCACCACTGCTCTCATTTTGAGGCTCCACAGGTTGAGGGTAATTCAGTGCAGGAGATCAAAGTAGAAGTCAAAGGTGAAAGTTTTAAGAtgacagagaaaaggaaagtgATGTTTAAATCCTACGAAACATTGGTATTTATTCAGACTGATAAACCCATCTACAATCCAGGCCAAACAGTGAATTTCAGAATTGTCTCTATGGATTCTAATTTTATTCCCCTGGAACAAAAGTACAGCACAGTAATTCTTGAGGATAATCGTCGTAACAGGATTGGTCAGTGGACAAATGTGTCCTCGACAGGCCTGATACTGCAACTTTCACATGAGCTAAATGCTGAAGCTCCACAGGGAAGTTATCAGATaactgctgacactggaaaTAGGTTGATCACACACCAATTTAAGGTGCAAAAGTATGTTTTACCCAAGTTTGAGATTACAGTAAAAGCACCAGAAGAACACAGTGTCGGTGACGAGGAACTGAAGCTGGAGGTTTGTGGAAAGTACACTTATGGACAGCCAGTACCTGGTGCAGCACTGGTGGAAGTGTGTcgtaaatttacacagaattatGTTCATCGTGAGGAAGCCCCAATGATTTCGCCATGCCTGGTTGAAAACGTGGAGATGAGTCAGACGGGTTGTGCCTCACTTACACTGAATGTTTCAACTTTCATTAATACTGAATTTGAAGATGATTTTGAGAACCGACTTAACGCTACTGTTACACTCACAGAGGAAGGAACAGaATTTTCCATGGTAAAATCTGTAATCATACAGCTCACTTTCCAAATTGGTAAAGTGGAACTCGTGGCTTTACCAAAAACCTTTGAAAGGGACAGTGTTATAGAAGGAAAAATTAAAGTTACGTCCTTCAGTGGAACACCAATTCCTAACAGGAAAGTTTATCTTTCGGAAGGTAGCTGGTGGTCTAAGAAGATACTACTCAATCTCACTACAGATAGTAATGGATTGGCAGACTTCTCAGTCCCTTCACCTGAACATCCTACAGCAGAGATAAGATTGCAAGCAAGTGTCTATCCAGAGGAAACATACCATGGATACAAAACACCATTCTTTACAAATGCTGATGCACATATACAGCTGCTCCAACCTGCCACACCTTTTAGTCCAGTATTCAGTGAACTGTCAATAGAGAGTTCAGAGGAACCATTTAAGTGTGGTGCTGAAATTCCCATAACCATTAACTACTATATTGTTGGGGAAACTACTGAAAGTTACAGTATTGATCTTATATACATGGTCTTATCTAAAGGAGCCATAGTCCATCATGGGCATGAGAAAGTTGAAGTGGAAGACTCTACAGAtctcagaaaaggaaaaatctcATTCAAACTATCTGTTGTTGCTGAGCTGGCTCCTGTAGTGCAGGTGGTGGTGTACTCTGTCCTTCCCAGTGAGAACATCATCGCTGCTAGCAAGAATTTTGATGTggaaaaatgtttcagaaataaGGTTTCGCTACAGTTCTCTCCTTCCAAGGCAGTTCCTGGTGAGAAGAACACTCTCGAGCTCACAGCTCATCCTGGTTCACTGTGTGGCCTCAGTGTTGTGGATCAGAGTGTGTTCATCTTGGAGTCTGGAGAACGCCTAAACACTGACAAGATATTTAGTTTGTTGCCAGTGACAATGGTATCACATTACCCCTATATGGTTGAAGATGATCAGGAGTGCTTGCATGTTAGACCTCGAAGGGATGTACAGATTTACCATGCTTACAACATATTAAAGGGAGTGGGGCTGAAGATGGCAACAAATTTGGCTGTTAGAGAACCTCAATGTTTGATATACAAAGGCATACATTATCATCGCAGACATGGATATGAGGtGCAATACATGGTAGGAGAGCGTTTAGCTTCTCCTGGATTACAAGGATCATCACTAGATTATGAACCCATTGAGACAGTTCGCAAATTCTTCCCAGAAACATGGATATGGCAACTTTCTGAAGTGGGGGACTCTGGATCAGCACATCTTCCTGTCACTGTTCCTGACACCATCACCACTTGGGAGACAGAGGCTTTCTGCGTGTCCTCTAGGGGTCTGGGACTGGCTCCTCCTGTTCAGCTCACTGTATTTCAGCCCTTCTTCCTGGAGCTCTCGTTGCCTTACTCCATTATCCGGGGAGAGGTTTTTGAGCTGAAGGCCACTGTCTTCAATTATCTTTCCAAATGCATTATGGTTAAAGTGACTCCAGCCTCTTCCTCAGACTACACTCTGGAACCTTCTTCTGATGGCGAGTATTCATCCTGCCTGTGTGCAAATGGCAGAAAGACCTTCAAATGGACTCTGATTCCCACTGTGCTTGGAGTCTTGAAAGTGACAGTGAGTGCAGAGGCAGAACAATCCCAGACTGTGTGTGACAATGAGATTGTGAGTGTTCCAGAGAGAGGCCGTATTGACACAGTTACACGAAGCCTGATTGTACAGGCTGAAGGAACTGAGAAGACAAAGAGCCAGAGCTGGTTATTATGTCCACAGGGAAACAGTGTTTCAGAGGAGTTGGAGCTGATTCTTCCTGAGGATGTAATAGAGGGATCAGCACGAGCTTCTGTTTCAGTACTTGGAGACATACTTGGCCGTGCATTAAAAAATCTGGATGGATTGCTAAGGATGCCATATGGCTGTGGTGAGCAAAACATTGCTCTCCTCGCCCCCAATATCTACATTCTTCAGTATCTAGAGAACACTGAGCAGCTCACCACAGCTATCCGTGAGAGAGCTACTGGTTTCCTTAAGAGTGGATACCAGAGGCAACTtaactataaacatataaatggtGCATATAGCACATTTGGCAGGGGAGAGGGGAACACATGGTTAACTGCTTTTGTCTTGAGGACTTTCGGCAAAGCACAACATTACATCTTTATTGATCCAGAAATCATTAACAGTGCAAAGCAATGGCTCATAAGTATGCAGAGATCAGACGGCTGTTTTATACAACAGGGAAGTCTGTTCAATAACAGAATGAAGGGTGGTGTAAATGATGATGTGACTATTACTGCCTACATCACTGCATCATTGCTCGAATTGGGTAATACAGTCCAGGATCCTGTTGTGAATAAAGGACTATTGTGCCTCAAGTCTTCTGTTGGTGACCTGACAAACACCTATACCACTGCACTGTTGGCCTACACTTTCAGTCTGGCTGGAGAGAAAGAAATTCGAGAGCAGCTACTAAACAAGTTGGAGAATGTTGCCATTTCAGGAGATGGTCGGCTTCACTGGTCTCAGTCAGCATCAGATGACTCTGAGGCCTTGTCAGTGGAAATCAGTTCCTACGTGCTGCTAGCTGTTCTCACTGCAGGTCAACTCTCTACTGCTGATTTGGGATATGCTAATAGGATAGTCAGCTGGCTGGTGAAGCAGCAAAATCCTTATGGAGGCTTTTCATCCACCCAGGATACAGTTGTGGCCCTCCAAGCTCTGGCTCTGTACTCCACTAAAGTGTTCAGCTCAGACGGCTCTAGCACAGTAACTGTAAAGTCAGCAGATGGACACAGTCACAACTTTGAAGTGAACCAGAACAACAAGTTACTGTACCAAGAAAGATCATTGCAGGATGTTCCTGGCAAATACAGCATTGAAGTGACGGGCTCCAGCTGTGTGTCAGTGCAGACAGCACTTTTCTACAATGTCCCCACACCTACTGAAAGTAGTACACTGAGCATCACGGCTAAGACAGAGGGAAACTGCACAAAATCATTTGGACAAACTTTGTCCCTCAAGTTCACTGTTGGATATACTGGGACACTTAACAACACTAACATGATCATAGTGGACATAAAACTCTTATCAGGGTTCACAGCAGATCCTGGTGAActGAAAAAAGGCATTTTGGTGGAACGGGTTGATTCTAAAGATGACCATATTATCGTGTATATCAAAGAGCTCCCTAGGAATATTCCTGTCAACTATGAGCTACACATTAAACAGGTGCTTCCTGTCAAGAATCTCAAGCCAGCGGTGATCAAAGTTTATGATTACTACCAAACAAGTGACCAGTCTGAGACGGAGTACACCTCCCTGTGCGTGTAGAGTTTCACACTGGAATTGAAGATGCAGAAAATCTGCTGTatgattgttttgttgttgaaataaaaatacatttcaaatgcCTA

Function

GO: NA

KEGG:

id description
K23589 PZP; pregnancy zone protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924311.2 True 4426 mRNA 0.43 34 9839316 9866331

Neighbor

gene id symbol gene type direction distance location
LOC113532826 LOC108277820 coding downstream 4229 9823069 ~ 9835087 (-)
LOC117599039 LOC108277821,LOC108277820,LOC108277479,LOC108277480,LOC108277478,LOC108411099,LOC108411100,LOC108411104,LOC108411102,LOC108411101 coding downstream 16629 9717745 ~ 9822687 (-)
nlrx1 nlrx1 coding downstream 164870 9664911 ~ 9674446 (-)
pdzd3a LOC108277664 coding downstream 174682 9655582 ~ 9664634 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 191077 9636571 ~ 9648239 (-)
ulk2 ulk2,LOC107717276,LOC107657566 coding upstream 174411 10040742 ~ 10070727 (-)
sgsm2 sgsm2,LOC108277483,LOC107728220 coding upstream 297076 10163407 ~ 10208971 (-)
tnfaip1 tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792 coding upstream 345255 10211586 ~ 10218371 (-)
supt5h supt5h,LOC107657557,LOC107586261 coding upstream 454500 10320831 ~ 10342885 (-)
il15l NA coding upstream 479259 10345590 ~ 10356732 (-)
LOC117599044 NA non-coding downstream 32807 9802492 ~ 9806509 (-)
LOC117599042 NA non-coding downstream 80350 9758158 ~ 9758966 (-)
G222852 NA non-coding downstream 795565 9037480 ~ 9043751 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 1290942 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 1348032 8464576 ~ 8491284 (-)
LOC117599021 NA non-coding upstream 20685 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 65025 9931356 ~ 9978560 (-)
G223408 NA non-coding upstream 169411 10035742 ~ 10035982 (-)
G223410 NA non-coding upstream 172513 10038844 ~ 10039358 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding upstream 215250 10081581 ~ 10082117 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 126257 9677259 ~ 9713059 (-)
G222809 oaf other downstream 892417 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1360404 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2375817 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 3185898 6619172 ~ 6653418 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 441719 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 841921 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 1321919 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 2522535 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 2568875 12435206 ~ 12638725 (-)

Expression


Co-expression Network