tubd1 (tubd1,LOC107581164)


Basic Information

Item Value
gene id tubd1
gene name tubd1,LOC107581164
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6748916 ~ 6756266 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924352.2
CGTGAACGCAGCATGATTCACCTCCCTGACCGgcataaagcggttactgaaggaggcatgaatgatgaatgaattcaCTGTAACGAACAGTTCAGATGTTTCCATGGAAGCAGTGTGATTAAATTACACTGCGAGAGTAACGCCATTGTTTACCAAACCtaccaaaaaaagagaaaagaaagaatgaaacgACTCCTATACGCGACTTTCCTCTGAGCGTTCACACACAGGAACCGACTCAGTGAACCGAGTCATTCGCGACGACACATCACTAGCTGCACGCTAGTGAGCCGAGTCTGCTGTTTCACAGCATGGCCGGTCAGGTGAGGCTGCTGTGCTTGGAAGTTTGTAGGTAAGCAGTAGCTAGTTTGCTCTAGTAAGTAAGGAGGTAGTTATCTAGGTCCTGACATGTCGGTTGTGACAGTGCAGTTAGGTCAGTGCGGTAACCAGATAGGACCGGAAGTGTTTAGTGCTGTGTATGAAGACTCCACTGGAGCAAatgcacaaacatacaaacagtgCAGCGATGAGAGATTCTTCAGAGAGAATTCACACGGAGTGCTGGTGGCACGTGCAGTTCTTATTGACATGGAGCCCAAAGTAATTACTCATGCCATAGCAAAGGCGTCAGGCTCCGGAAAATGGAGATATGGGGGAAAATCCCACTTCTGCCAGAAACAAGGCTCTGGAAACAACTGGGCAAACGGTTACTGTGTTCACGGCCCTCAGCATAAGGACGCAGTGGAAGATCTGGTGAGGCGGGAGGTAGAACGCTGTGATCGCCTTGCAGGAATATTTGCCATGATGAGTGTGGCAGGGGGTACGGGTTCTGGCGTGGGCACCTATGTCACCCAGTGTCTGCGAGACACTTAtccacattcatttattcttaaTCACCTGACATGGCCCTATGGAACAGGAGAGGTTATCGTGCAAAACTACAATTCGGTTCTCACTCTGTCTCGTCTCTACACGCTGTCTGACGCACTCGTGGTGCACGAGAATGACACGGTTCACAAAATCTGCAGCCAGCTGATGAACATCAAGCACATCTCTATCTCTGACGTTAACAAGGTGATCGCTCATCAACTGGGCAGCGTGCTGCAGCCTGCATACACCGCTGACTCGCCTGCTCACTACAGCCGAAACCCCATAGGTGAATTGCTGAGCTCCCTGGTGTGTCATCCCGAATACAAACTGCTCAACGTGTTGAACATTCCTCACATGTCTCAGACATCTCTGGCCTACAGTGCCTACACCTGGCCCGGACTGCTCAAGCATTTAAGACAAATGCTCATTGCCAATGCCAGAATGGAGGAAGGTATTgattggaaagtgtgtgtgccgTCGAACAGAGCAGAGAGCATAAGAAACACACAAATGGGTTTTAACAGATCACTCTCTAATCTTCTAATACTGCGGGGTAAAGACGTTTCCTCTGCCGATATAGGGGCGTTTAAGGAGCCTGGACTCTACGTGCCATGGGTTCCAGCAGATGGCACTTTCCACATGTGGCACTCCCCCGTGCCCTTCAGTGGCTATGAGAAGTTGGCCACTTTAGTCAGCAACAGCCAGTCCCTTTTGAATCCTCTGGATAATATTGTTAAGAAGGCCTGGAACATGTTTGCATCACGGGCCTATATTCATCAATATACCAAATTTGGAATTTCAGAAGAAGATTTTCTCGAAAGCTTTACCATGTTGGAACAGATTATCTCCAGCTACACTCACCTTTGAACCTACCTCActattttaaatgacattttgaaatttttttttttaactaattacTGCATGCTAACTATCTAAAGTGAAAGtgtctgtgtgattgtgtgtgtctttgctgTATTTTCTACAAGCTGTGTATAGTATTAAATTGATATACATGTTCAACGTCAA
>XM_034310652.1
ggTTATTTAAAGGAGTAGTGTGACTGCAGACAGGTGAGCTGTATTAATAATCAGGCGGAGGTCACGTGACGAGATCGCTGGCTGAGGATCATGGGAGATGTAGTCTGCAACTTATGGAGTGCTGGTGGCACGTGCAGTTCTTATTGACATGGAGCCCAAAGTAATTACTCATGCCATAGCAAAGGCGTCAGGCTCCGGAAAATGGAGATATGGGGGAAAATCCCACTTCTGCCAGAAACAAGGCTCTGGAAACAACTGGGCAAACGGTTACTGTGTTCACGGCCCTCAGCATAAGGACGCAGTGGAAGATCTGGTGAGGCGGGAGGTAGAACGCTGTGATCGCCTTGCAGGAATATTTGCCATGATGAGTGTGGCAGGGGGTACGGGTTCTGGCGTGGGCACCTATGTCACCCAGTGTCTGCGAGACACTTAtccacattcatttattcttaaTCACCTGACATGGCCCTATGGAACAGGAGAGGTTATCGTGCAAAACTACAATTCGGTTCTCACTCTGTCTCGTCTCTACACGCTGTCTGACGCACTCGTGGTGCACGAGAATGACACGGTTCACAAAATCTGCAGCCAGCTGATGAACATCAAGCACATCTCTATCTCTGACGTTAACAAGGTGATCGCTCATCAACTGGGCAGCGTGCTGCAGCCTGCATACACCGCTGACTCGCCTGCTCACTACAGCCGAAACCCCATAGGTGAATTGCTGAGCTCCCTGGTGTGTCATCCCGAATACAAACTGCTCAACGTGTTGAACATTCCTCACATGTCTCAGACATCTCTGGCCTACAGTGCCTACACCTGGCCCGGACTGCTCAAGCATTTAAGACAAATGCTCATTGCCAATGCCAGAATGGAGGAAGGTATTgattggaaagtgtgtgtgccgTCGAACAGAGCAGAGAGCATAAGAAACACACAAATGGGTTTTAACAGATCACTCTCTAATCTTCTAATACTGCGGGGTAAAGACGTTTCCTCTGCCGATATAGGGGCGTTTAAGGAGCCTGGACTCTACGTGCCATGGGTTCCAGCAGATGGCACTTTCCACATGTGGCACTCCCCCGTGCCCTTCAGTGGCTATGAGAAGTTGGCCACTTTAGTCAGCAACAGCCAGTCCCTTTTGAATCCTCTGGATAATATTGTTAAGAAGGCCTGGAACATGTTTGCATCACGGGCCTATATTCATCAATATACCAAATTTGGAATTTCAGAAGAAGATTTTCTCGAAAGCTTTACCATGTTGGAACAGATTATCTCCAGCTACACTCACCTTTGAACCTACCTCActattttaaatgacattttgaaatttttttttttaactaattacTGCATGCTAACTATCTAAAGTGAAAGtgtctgtgtgattgtgtgtgtctttgctgTATTTTCTACAAGCTGTGTATAGTATTAAATTGATATACATGTTCAACGTCAA

Function

symbol description
tubd1 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within cell projection organization and microtubule-based process. Predicted to be located in centriole; cilium; and nucleus. Predicted to be active in cytoplasm and microtubule. Orthologous to human TUBD1 (tubulin delta 1).

NR:

description
tubulin delta chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K10390 TUBD; tubulin delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924352.2 True 1899 mRNA 0.47 8 6748916 6755376
XM_034310652.1 False 1459 mRNA 0.47 8 6748916 6756266

Neighbor

gene id symbol gene type direction distance location
LOC113532622 NA coding downstream 143852 6583963 ~ 6605064 (-)
itgae.2 NA coding downstream 168955 6558532 ~ 6579961 (-)
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding downstream 194465 6536048 ~ 6554451 (-)
mrpl28 mrpl28,LOC107659942,LOC107554268 coding downstream 216032 6527472 ~ 6532884 (-)
mos mos coding downstream 235183 6511236 ~ 6513733 (-)
LOC113532877 LOC108277444 coding upstream 74968 6831234 ~ 6840971 (-)
LOC113532633 pou2af1 coding upstream 126862 6883128 ~ 6888991 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding upstream 175256 6931522 ~ 6936069 (-)
phldb1b phldb1,LOC108277892 coding upstream 202857 6959123 ~ 7039860 (-)
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding upstream 407691 7163957 ~ 7172748 (-)
G221618 NA non-coding downstream 60605 6687589 ~ 6688311 (-)
G221448 dnhd1 non-coding downstream 233951 6513828 ~ 6514965 (-)
G221461 NA non-coding downstream 331291 6416882 ~ 6417625 (-)
G221450 NA non-coding downstream 332108 6326091 ~ 6416808 (-)
G221245 NA non-coding downstream 543986 6203064 ~ 6204930 (-)
G221638 NA non-coding upstream 3144 6759410 ~ 6759618 (-)
G221633 NA non-coding upstream 4390 6760656 ~ 6761787 (-)
G221659 NA non-coding upstream 49889 6806155 ~ 6806367 (-)
G221681 NA non-coding upstream 111518 6867784 ~ 6870274 (-)
G221682 colca2 non-coding upstream 115471 6871737 ~ 6871979 (-)
LOC113532805 NA other downstream 95498 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 724563 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 944943 5797928 ~ 5803973 (-)
G220990 NA other downstream 1038025 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1149541 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 636149 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1648563 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2184752 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2920993 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3551784 10308050 ~ 10312516 (-)

Expression


Co-expression Network