si:dkey-182i3.11 (LOC108277482)


Basic Information

Item Value
gene id si:dkey-182i3.11
gene name LOC108277482
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10483151 ~ 10488560 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924366.2
atccagagcttatcctgGGAAATGGGACATAAGGTGGGAATATACCAtggatggaacaccagtccaACACAGATGCAGAAGTGGGTCCATATACACACAACAGTTCTGCTGAGCTTCATTTCCTTTCTTCTAAAACACTGAAGACCCTTGGATTCTGCTTACAATACACTGGTCAAAGTTTCGAACCATGCTTACACACTTCACTGTGGCAATGACCATCATTGCAGTGGCTGATGCATGTATGATGTCTTGCGAGTGTGTAGACAACACCACTATCACTTGTTTAAACAAGAATCTGTTGGAATTGCCTCTACCTCTGCAAGGTACCAAGGACCTCTTTGTTAGTAACAACCGGATCCAGTCTCTCCCCAGTGAAGGTTTAGAAGAATTACATGTCCTTGATCTTACCAACAACCACCTTAGTGAGTGGCTTACTGGTACTACCAGATTACCAAACATGAGAAGCCTTACTCAGCTATTTCTAAGAGGAAATGGACTTAGTACTTTTATGACTGGACTATTTCAAGAACTGAAGAATTTGACTTACTTGGACCTCAGTGAAAACCGTGTAAAAATTATCCCACAGAAATTCCTACAAGGTCTGCGCAACCTTCAAACTCTTATTTTGAGCTTAAACCAGATAAATACACTCTCCTGTGGAGCTTTTGAAAAAGCATCTGCACTTAGGGAGCTCCACCTGAACAGTAATAACATTGAGGTGCTGGATACGTGTGTGTTTGAAAACTGTGTCAATCTGAAAAGGCTCTTCCTGTCTAACAACCGTTTGAAAAGTGTAAATCAAGGGACCTTCCGAAGCGCACTTGGCCTGGTTCACCTTGATCTCAGCAATAACATGCTTACCACTGTGCCTACTGATGCCCTTAAGGACACCTCTAATCTCACCAGCCTCTACCTGCAGAAAAATGCTATCATGTTTGTTCCTGAAAATGCTTTCTATAGGCTATCGGCATTAAGAAAACTGTATCTGAACAATAACCGCATTGATATTTTAGCCGTTACCTCTTTCAGAGGTCTTTACCAGCTTGGTGATCTAGATTTAAGTTTCAACCAGTTGCAAAATCTCTCTTCACAGGTATTTCAAGCTCTAGGCAAACTAGAAAACCTTAATCTATATCACAATGCCTTGGCATTTCTTCCAAATGGCCTGTTTAATAATCTGAAAAAGTTAAATGAACTACAGCTTGACAGAAATAATATTCAGGTCATCCCACCAGATCTATTTCAATCACTTTCAAAGCTCAGGTATTTACAGCTAGATAATAATCATATCTCAGAGCTCAACCTATCCTCATTTGCAACAATGAGAAAGCTTAAACACCTTGATCTAAGCAACAATCGTTTGACAAAAATTTCAAAGGGAATTTTACACAAGACACTGCTGCCACTTCATGATGTCCAACACCAATCCTCACAAGGGGGTCCTGCACTTAGTGAAATTATCCTGAGCAATAACAAAATTCAGGTGATAGACAAGCACGTGTTTGAAAACTACACCAATTTGAACAGACTCTACTTGTCCAACAACCATTTGATAAATTTAGAGGAAGGGACCTTCAGGGGTGCACTGGTCCTGACTCATCTTGATCTTAGTGAAAACAGGCTTACCTCTGTACCCACTGGTGCACTTAAAGATAGCCCTAATCTCACACACCTTTGCTTGCAGAACAATGCAATCACATTCGTCCCTGAAAATGCTTTCTCAGGACTATCTGCGCTGAAGAAATTAGACTTGAGCAATAAtgccattttaaatttaaatgaaaagtcCCTGATGCCTCTTTACAATCTTGTGGAGTTAGATTTGAGCTTCAACCAACTGCGAACTCTTACAAGTGTGCTTCAAGACTTGAGGAAACTGAAGATCCTTAAATTGCACCAAAATCGCCTAGTATCACTTCCCAACGGTATGTTCAACAATTTGACTGAATTAACTGAACTACGGCTTGATAGTAATAATCTTTCTGCCATCTCACCGGATCTATTCCGTCCACCAACTGAACACCGAGATTTAGACATGGATAGTAATCATATCTCTGGGTTTAACTCATCCTCATGCACTGCACTTACTAACAACCTCCTGACAAACCTCCTGACAAAAAATTCCAAGGCTCTTTTCAACGTTACACCACAATCCAATGATAATGTGAAATCCCTAGCCTCACTAACAGATGCTGAACTTAGGGAGCTCTTAGTCAGTAATAATGCTGAGATGATAGATATGAACTGCACCACCGCAATCAGGCTCTATCTGTTGTTCAAGCACATAAAAAGTGCAGAGAAAGGaacttttaaacacacactgagattgaCTGATCTTGATCTCAGCAAAAACAAGCTCACTACTATCCCCAGTGGTGCCTTTAAGTATACTACCAATCTCACCAGCCTCTACTTGCAGAAAAATGCTATCATCTTTGTCCCTGAAAATGCTTTCTCTGGACTATATGAATTGAGAAAATTGGATTTAAGCAAAAATCACCTGGTTAAGTTGCATCAGGACTCCCTGATGGGTCTTTTCCAGCTTACTGAACTAGATCTGAGCTTCAACCAATTGCAGAATCTCCCCTCAAATGTGTTCCAAGACTTGGGCAACCTGGAGGTTCTTAATTTGTACCACAATGCTCTGGCATCACTTCCCAGTGGCTTGTTCAAAAATCTGACCAAATTAAGAGAATTAGTGCTTGAAAGAAATAATATATCTGTCATTGTACCAGACCTATTCCACCCACTAACTGAACTCCGAGAATTACAGCTGGATAGCAATCACATCCTTGAGCTCAACTCATCTTTATTTAGAACACTGACAAAGCTGCAGGAAATCTATTTAAACAACAACTTAATAATGAAAATTCCCAAGCATTTTCTACAGAAAGCACAACATCTGAAAGTTCTACATCTGATGAGCAATCATATTGACGCTGTTTCACAGTTTGCTTTCAAAGGCCTTAACAGACTCCGTTCTCTGAGACTCAGCAAcaacagcatttcttttctcCATCCTCAGACGCTGACTGGTCTTGATGACCTAAGAGAGCTCGGGCTAAATATTAACCAGATAGAGAGGCTCCCATCTGGGTTTTTCGCAGGGCTTCAAAACTTGAGGATGCTCGACTTGGCCAACAATGTTTTGAGTTCCCTGTCCACTGATGATTTCAAAGACTTGACAACATTAAGAGAGTTACACCTGAGTTTCAATAAACTCAATAAACTACCACATAACATTTTTAGGGCTCTGGGCAGGCTGCAGAAGCTCTTCTTGCAAAACAACCTCCTGTCTCACTTACCTCCAACAGTGTTCTCTCCTTTGACCTTTTTGCAAGAGCTTGATTTGGAAAACAACAAGCTCCAGCATCTTCCCACTGCACAATTTCAAGGCCTGAAGAACTTGAGACAACTACATCTCAAATCGAACAAACTACTTTCACTGGATAAAGGGACCCTGGAGGCTCTGACAGCGCTGAAATCCATATATCTCAGTGCTAATCCATGGGACTGCTCTTGTGCATCTAATATGTATGTCAGTACATGGATCAGTATGAACAGTCAGTTAGTAAAGGATAACTCCACTTGCTCGAGAAatctttctcttcctgtctcagATTTACAGCATTGTATCAGTGCAGCGCATTTCTCTGCATGTACACCATATATGCACATAACAACCATTATGACAATTTTCAGTGTGTATGCTTATATTCTGTGAGATCACTGTTTTCGTACAAATtccttttgtttccttttgctATAGTACAAAAAATGTACCTTAAACTCAGCCTTAGTGTGCAAATGTTACGTtgtaaaacagcattttaaatgtgaCTATGATTATCAatgatttattaacattttttattttagcctCAAACGTGGCGTCTTGTATAACCTTTAAAAATTCTCATCGCcaagctgactttttttttctaaaactgctttgtgatgatgtgtatcaagtgctgtacaaataaaatgtttctgtaatagcttccaaaattaaa

Function

NR:

description
PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924366.2 True 4016 mRNA 0.40 3 10483151 10488560

Neighbor

gene id symbol gene type direction distance location
spint2 LOC108277494 coding downstream 56864 10413292 ~ 10426287 (-)
plekhg2 plekhg2,LOC106612677 coding downstream 82890 10357549 ~ 10400261 (-)
il15l NA coding downstream 126419 10345590 ~ 10356732 (-)
supt5h supt5h,LOC107657557,LOC107586261 coding downstream 140266 10320831 ~ 10342885 (-)
tnfaip1 tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792 coding downstream 264780 10211586 ~ 10218371 (-)
ckmb ckm,ckmb,LOC107690449,LOC107601735 coding upstream 51009 10539569 ~ 10542916 (-)
ercc2 ercc2,LOC107743694,LOC107601732 coding upstream 71997 10560557 ~ 10570176 (-)
zgc:154093 LOC108278387 coding upstream 84075 10572635 ~ 10574319 (-)
zc3h4 zc3h4,LOC107601737,LOC107743691,LOC106580865 coding upstream 96279 10584839 ~ 10596711 (-)
bbc3 NA coding upstream 125086 10613646 ~ 10623137 (-)
G223766 NA non-coding downstream 70471 10412456 ~ 10412680 (-)
G223676 NA non-coding downstream 319779 10161783 ~ 10163372 (-)
G223449 NA non-coding downstream 381985 10100959 ~ 10101166 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding downstream 393161 10089643 ~ 10089990 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding downstream 401034 10081581 ~ 10082117 (-)
G223808 NA non-coding upstream 71866 10560426 ~ 10611848 (-)
G223827 NA non-coding upstream 147596 10636156 ~ 10636794 (-)
G223855 LOC108277744 non-coding upstream 267938 10756498 ~ 10761733 (-)
G224086 NA non-coding upstream 581124 11069684 ~ 11069958 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 617011 11105571 ~ 11168668 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 170635 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 770092 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1536252 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2004239 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 3019652 7392415 ~ 7463499 (-)
appbp2 appbp2 other upstream 219692 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 699690 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1900306 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1946646 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 2432403 12920963 ~ 12999031 (-)

Expression


Co-expression Network