ercc2 (ercc2,LOC107743694,LOC107601732)


Basic Information

Item Value
gene id ercc2
gene name ercc2,LOC107743694,LOC107601732
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10560557 ~ 10570176 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924376.2
CCTTGCCCCTTAAATAACAGAGTGAAGAACGTACGGTAATGTGCGGATTTGTCAGAGTAGTGTGTTCAGATGTGATGTACACAGAAACTgttaattttgtgtaattttgagATCGTATCTGCTGTCAGGCTGCAGCAGACACATTAAAAGAGGTGAAACAGTGTTACAACAGTCTTGCCAACAACAATCATGAAGTTGAATATCGAAGGGCTGTTAGTTTATTTCCCATATGACTACATCTACCCAGAACAGTACTCTTACATGCTGGAGCTCAAGAGGACACTGGATGCTAAGGGTCATGGCGTTCTGGAGATGCCCTCAGGGACTGGAAAAACTATTTCCCTTCTGTCTTTGATTGTTGCTTATCAGAGGGCCTACCCTCTCGATGTGACCAAATTGATTTACTGCTCTCGAACTGTACCTGAGATTGAGAAGGTGGTAGAGGAGCTGAGAAAACTAATGGACTACTATGCAAACGAAGCAGGAGAGGATAATCACTTCCTTGCTCTAGCACTTTCTTCAAGAAAGAATCTGTGCATTCATCCTGAAGTGAGCTCTCTGCGCTTTGGAAAAGAGGTGGATGGAAAATGTCACAGTCTGACAGCATCATACATTCGTGCACAACGTCACAGTAACCCCAGCCAACCTGTCTGCCGCTTCTATGAGGAGTTTGATGCTGTGGGAAGGCAGGTGCCAATTCCTCCTGGCATTTACAACCTGGATGATCTTAAAGATTTTGGACGGAGGAAAGGCTGGTGCCCGTACTACCTAGCACGCTATTCAcTTCTTCATGCTAATATAGTGGTTTACAGTTACCATTACCTTCTGGACCCAAAAATTGCAGACCTGGTCTCGAAAGAGCTTGCAAAGAAATCTGTTGTTGTCTTTGATGAAGCTCACAACATCGACAATGTGTGCATTGACTCAATGAGCGTTAACATCACCAGGAGGACATTGGACCGCAGTCAGAACAACGTGGACACACTTCAGAATACCATCCAAAGGATAAAGGAAACTGATGCTGCTAAACTACAAGAGGAGTACAGGAGATTAGTGGAGGGACTAAAAGAAGCCAATGTTGCCAGAGAAACGGATATCTATTTGTCTAATCCAGTACTCCCAGATGAAATACTCCAAGAGGCTGTCCCAGGAAATATCCGCACAGCAGAGCACTTTATAGGCTTCATGAAGCGTTTTCTGGAGTACCTGAAGGCTCGGCTGCGTATCCATCACGTTGTGCAGGAGAGTTCTCCTCAGTTCCTTAAAGATATCTATGAGAAGGTGTGCATTGACCGCAAGCCCCTCAGATTCTGTGCAGAGAGGCTACGCTCCTTATTGAGAACTCTGGAGATTGCAGATATTGCTGACTTCTCTGCCATTACTCTGATCTCCCACTTTGCTACTCTTGTTAGCACCTATAGCAAAGGGTTCACAATTATTATTGAACCTTTTGAAGACAAAACGCCCACGATCGCTAACCCCGTTCTGCACTTCAGCTGCATGGACCCCTCCATCGCTATAAAGCCTGTGTTTGAGCGGTTCCAGTCAGTTATCATCACTTCAGGGACTCTTTCTCCACTGGAGATCTATCCCAGAATCTTGGACTTCCACCCCGTTACCATGGCATCCTTTACCATGACACTGGCACGCACCTGCCTTTGCCCTCTTATTGTTGGGCGTGGAAATGACCAAGTGGCTATGAGTTCCAAATTTGAGACCAGAGAAGATTTTGCTGTGATCCGGAACTATGGGAACCTGCTTCTGGAAATGTCTGCCATTGTACCGGATGGCATCGTCGCATTTTTCACCAGCTATGTTTACATGGAAAACATTGTAGCTTCATGGTATGAGCAGGGAATTCTGGAAAACATCCAGAGGAACAAGCTTATTTTCATAGAGACACAAGATGCAGCAGAGACCAGCATGGCTCTAGAGAAGTACCAAGAGGCATGTGAAAATGGCAGAGGGGCCATCCTGCTGTCTGTGGCCAGAGGTAAAGTGTCTGAAGGAATAGACTTTGTTCATCACTTTGGGCGAGCTGTGATCATGTTTGGAGTGCCTTATGTCTACACCCAGAGTCGAATACTTAAGGCTCGTCTGGAGTATCTGCGAGACCAGTTTCAAATCCGTGAGAATGACTTCCTGACCTTCGATGCCATGCGACATGCAGCTCAGTGTGTAGGCAGAGCCATCCGAGGCAAGACCGACTATGGCCTCATGATCTTTGCTGACAAGCGTTACGCCAGAGCCGACAAGCGAGGTAAACTTCCCCGCTGGATTCAGGAACATATCACAGATGGCAGCCTTAACCTGACCATTGATGAGACGGTGCAGCTTGCCAAGCACTTTCTGCGGCAGATGGCACAGCCATTTAGAAGGGAGGATCAGTTGGGTCTGTCTCTGCTGACTCTGGAACAGTTGCAGTCAGAGGAAATGCTGCAGAAGATCTCCCAGATTGCTCAACAGGCCTAATGCTCATCACTGAGATGGAGAATGTGCTTAAACTTTTACacctgtaaatatttttaaatgtttttcatcaaacacAATGTCAGTAATAAATGCTGATTATTTCTACAAA

Function

symbol description
ercc2 Predicted to enable DNA helicase activity and damaged DNA binding activity. Predicted to be involved in several processes, including nucleotide-excision repair; positive regulation of mitotic recombination; and transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; gonad; heart; male organism; and precaudal vertebra. Human ortholog(s) of this gene implicated in several diseases, including acoustic neuroma; acquired immunodeficiency syndrome; carcinoma (multiple); hematologic cancer (multiple); and xeroderma pigmentosum (multiple). Orthologous to human ERCC2 (ERCC excision repair 2, TFIIH core complex helicase subunit).

NR:

description
TFIIH basal transcription factor complex helicase XPD subunit

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10844 ERCC2, XPD; DNA excision repair protein ERCC-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924376.2 True 2581 mRNA 0.46 23 10560557 10570176

Neighbor

gene id symbol gene type direction distance location
ckmb ckm,ckmb,LOC107690449,LOC107601735 coding downstream 17641 10539569 ~ 10542916 (-)
si:dkey-182i3.11 LOC108277482 coding downstream 71997 10483151 ~ 10488560 (-)
spint2 LOC108277494 coding downstream 134270 10413292 ~ 10426287 (-)
plekhg2 plekhg2,LOC106612677 coding downstream 160296 10357549 ~ 10400261 (-)
il15l NA coding downstream 203825 10345590 ~ 10356732 (-)
zgc:154093 LOC108278387 coding upstream 2459 10572635 ~ 10574319 (-)
zc3h4 zc3h4,LOC107601737,LOC107743691,LOC106580865 coding upstream 14663 10584839 ~ 10596711 (-)
bbc3 NA coding upstream 43470 10613646 ~ 10623137 (-)
rad1 rad1,LOC107601739 coding upstream 62688 10632864 ~ 10635825 (-)
tmem97 tmem97 coding upstream 69685 10639861 ~ 10641033 (-)
G223766 NA non-coding downstream 147877 10412456 ~ 10412680 (-)
G223676 NA non-coding downstream 397185 10161783 ~ 10163372 (-)
G223449 NA non-coding downstream 459391 10100959 ~ 10101166 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding downstream 470567 10089643 ~ 10089990 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding downstream 478440 10081581 ~ 10082117 (-)
G223827 NA non-coding upstream 65980 10636156 ~ 10636794 (-)
G223855 LOC108277744 non-coding upstream 186322 10756498 ~ 10761733 (-)
G224086 NA non-coding upstream 499508 11069684 ~ 11069958 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 535395 11105571 ~ 11168668 (-)
G224358 NA non-coding upstream 824544 11394720 ~ 11397828 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 248041 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 847498 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1613658 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2081645 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 3097058 7392415 ~ 7463499 (-)
appbp2 appbp2 other upstream 138076 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 618074 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1818690 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1865030 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 2350787 12920963 ~ 12999031 (-)

Expression


Co-expression Network