nxn (nxn,typx)


Basic Information

Item Value
gene id nxn
gene name nxn,typx
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6094670 ~ 6156851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924411.2
GAGCGCATTCCTTAACAGCACTCAGTGTGCCGAGTCCTCATGCTGAAGGCGGCGGTGAAGCCCGCTCTGTGCGCTTCAGAACCGGCCAGATAAGGGGCTCCACAGCGGCTCGGCTTCCGTCAAGCCTGGTGAGCTTTTCCTTCCAGCTAGTGGGTCGACCGACGGAGTACAAATCGTCCGCCACATTCCAACGCGACGATGTCGGAGTTCCTGGTAAGTCTGCTCGGAGAGCGGCTCGTCACCGGAGAGAAAGCCGAGGTGGACGTGCACGCGCTGGGCAGCGGGCTCGCGCTCGTCGGCCTCTACTTCGGCTGCAGCGTGAACGCGCCGTGCCGCCAGTTTAACAGCAGCCTGGCAGACTTCTACTGCCACTTCAAAACATCCTCCGAGCACAAGGACAAACTGGAAATTGTCTTCATCTCGTCCGATCAGGACCAGAAACACTGGCAGGACTTCTTGCAGGAGATGCAATGGCCGGCGTTGCCTTTTAAAGACAGACACAAAAAGaTGAAGCTGTGGAATAAGTACAAGGTGACCAGTATCCCCTCACTGGTGTTTGTGGACGCAACAACAGGGAAGGTGGTGTGTCGCAACGGTTTACTTGTGGTGAAAGACGACCCTAAAGGTCTAGAGTTCCCGTGGGGGCCGAAGCCCTTTGCGGAGGTGGTGGCCGGACCCCTGCTCAGTAACAATAGGCAGACGACAGACAGCAGCACCTTGGAGGGTTCCTACGTGGGGGTTTACTTCTCTGCTCACTGGTGCCCTCCCTGCCGCAGTCTTACCCGAGTGCTGGTGGAGTCTTATCGGAAAGTGAAGGAGTCGGGACACAAGTTTGAGATCGTGTTTGTGAGCGCTGACAGATCAGAAGATTCCTTCACGCAGTATTTCAGCGAGATGCCGTGGCTGGCCGTGCCATACACAGACGAGGCCAGGAGATCCCGCCTCAACAGACTCTATGGCATACAAGGGATCCCCACACTAATTTTTCTGGACACGgaaggtcacatgatcacgCGGCAGGGCCGGGTGGAGGTGCTCAATGACCCAGAATGCCATCTTTTCCCCTGGCACCCACGGCCTGTGCTGGAGCTCAGCGAGTCCAATGCTGTACAACTCCATGAAGGCCCCTGCCTCGTTCTGTTTGTAGACGCAGAGGAGGAGGGTGAGCTGGAGCCAGCCAAGGAGCTCATCCAGCCGATTGCTGAGAAGATCATGGCCAAGTACAAAGCCAAGGATGAGGAAACCCCGCTGCTCTTTTTTGTGGCTggagagGACGACATGAGCGACTCTCTGCGCGATTACACCAACCTGCCTGAGGCGGCGCCACTGCTCACCATCCTGGATATGTCAGCCCGTGCAAAGTACGTCAAAGACGTGGAGGAGATCACGCCGGCCGTGGTGGAGCAGTTTGTCACTGACTTTCTAGCCGAGAAGCTCAAACCGGAGCCAATATAAAGTTGGACAGTACTACATCTCCTATCAGCCCCGTGACTTCCACTTCCCTTCACTCCTCCTGTGAGACTCTGAGAAGCTTCACTTTGTACTGactcgtgtttttttttaaacaaacactaCCCCACATCCCTGGagtccttctttctctcctgtgGTGCCTTGCATATTTACAGCCAGGATGGTAAAATTTCCTAAAAAGATTTTTCTGTTGTGGCAGTACATGTCAGAATGTAGATGAAACAGCTACAGTACACTTGGAATtaaaacactttcattttattttattaaaaattaataagacaTGGCTTTTATTTCCACATAGTGCTTTCAGTAAGAAAATCCTGGTGCATTTCTAAGGAACGCAGCACACACGTTTCAGGAACAGGCTGCACTTCTGTCCTTATGGGTGCTGATTATACACTTTCATGGACAACCTGATATCTCCGTAAAGAAAGTTCACAAAGTCTGTTCATTTGTTAAAGCAGTTTTATGCAGTTGGCTATTCATGAACCAGAAATTAACTTTTTTCCAAGAGTTCTTGATATTCGATGTAACACATTTTCCCATTTCAGTCacatttcagtggattttctgtgAAGGTCCAGTTTAATAAAACAGTATAATTTTGAAGGCACAGAATAGCATTTAGCAAGTTTCCACACTAAATGTAGGCATTCAATAGTGTACagcttctgtctctccttcatTGTGTTTCTCTTGAGCCCTGGCCATTAAAACTGACTGTCTTGGT

Function

symbol description
nxn Predicted to enable protein-disulfide reductase (NAD(P)) activity. Predicted to be involved in circulatory system development; negative regulation of Wnt signaling pathway; and negative regulation of protein ubiquitination. Predicted to act upstream of or within Wnt signaling pathway and cell differentiation. Predicted to be located in cytosol and nucleus. Is expressed in several structures, including basal plate midbrain region; brain; immature eye; lens; and neural plate. Human ortholog(s) of this gene implicated in Robinow syndrome. Orthologous to human NXN (nucleoredoxin).

NR:

description
PREDICTED: nucleoredoxin

GO: NA

KEGG:

id description
K17609 NXN; nucleoredoxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924411.2 True 2206 mRNA 0.50 8 6094670 6156851

Neighbor

gene id symbol gene type direction distance location
glod4 glod4,LOC102784280 coding downstream 7580 6083740 ~ 6087090 (-)
LOC113532842 kiaa0100,LOC107661106,LOC107727920 coding downstream 14022 6049453 ~ 6080648 (-)
rskra LOC108277445 coding downstream 47064 6035073 ~ 6047606 (-)
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding downstream 61159 6029246 ~ 6033511 (-)
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding downstream 66067 6025463 ~ 6028603 (-)
txndc17 txndc17,LOC107661118,LOC107727907 coding upstream 1997 6158848 ~ 6161315 (-)
fam222bb LOC108277976 coding upstream 25197 6182048 ~ 6188370 (-)
caln1 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107659935,LOC108443712,LOC107672359,LOC103034584 coding upstream 76397 6233248 ~ 6298950 (-)
tyw1 LOC108278267,LOC108443711,LOC107716137 coding upstream 148507 6305358 ~ 6382839 (-)
zgc:103681 LOC108277991,LOC108443709,LOC103035104 coding upstream 229328 6386179 ~ 6394307 (-)
G221214 NA non-coding downstream 2236 6091913 ~ 6092434 (-)
G221068 NA non-coding downstream 224043 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 299217 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 590728 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 605662 5488775 ~ 5489008 (-)
G221245 NA non-coding upstream 46213 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 169240 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 260031 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 356977 6513828 ~ 6514965 (-)
G221618 NA non-coding upstream 530738 6687589 ~ 6688311 (-)
dynll2a dynll2a,LOC107554284 other downstream 70317 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 290697 5797928 ~ 5803973 (-)
G220990 NA other downstream 383779 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 495295 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1123151 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 462321 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1235564 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2247978 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2784167 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3520408 9677259 ~ 9713059 (-)

Expression


Co-expression Network