tlcd2 (tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107744789,LOC107685052)


Basic Information

Item Value
gene id tlcd2
gene name tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107744789,LOC107685052
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11442749 ~ 11460409 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924427.2
GTTACACAAGCAGTTCAGGGTTTTGTAACACATGAGTGTAGTACGACTACGCACACAGTCTATTCCCACTCATCTCCAGAGCTGAATGTGGTGATTATATGGGACCAGGCGCGTGTAGACGGCGTGGTTTTTTCCCCATGACGCATTTAATGTAGCTTTAATGTAACAGACATGCTGAAATGGTGAGAAAGTAAGAAAGGGGTGTGTACTGTTTATCATTCGGGAAGCGTGAAATATACGGGTTCGAGCCATCAGATAGACACCATCGGAGCTGAGAGGAGAGCATGGAGTTGCAGTCAGTGCTGCTGACCACCGGCGCGTCTGTGGGCTTTTTCAGGCTGGTAAACCGAGGACTTGGTAAACTCTATGTACCAGACACAGCTCAGAGGAATATATGGAAATGGAGAAACATCTCCACCTCTTTCGTACACAGCCTCATCACTGGAATATGGGCTGTGCTTTGTTTTTATATGCATCCCCAAATGGCTGAAGATTTGATAGAAACACACTCCGTCTTCTCCCATGCTTTGGTGTGTGTATCAATTGGATACTTCATATATGACTTCTTTGACATGGTTTTCAATCAGAAGATCAACCAGTCATGGGAGCTCCTTTTCCATCACATGGTGGTGATCTCCTGCTTTGGGCTTTCAGTGCTGACGTGTCGCTATGTGGGCTTTGCTGTCGTGGCCCTGCTTGTGGAGATCAACTCCATCTTCCTGCACCTGAGGCAGATGTTGCGGATGGCCAGTATTGCCAAGAGTACAGTGTACCGTGTAAACAGCATGATTAACCTGGGCACGTACGTGGTGTTCCGCATCAACACGCTGGCATGGATGACGCGCTGGTTGGTCCTGAACCGCGATCACATCCCTCTTTTCAGCTACACAGTGGGCAGCGTGGGTCTGGCCATCATGACCCTCATGAACATTGTTCTGTTCTACCGGTTGCTCCGTACTGACTTCCTCAAGTCCAGCCGGGAGAAGGAGGTCAAGAAAGACAAGGACATGTAATAGGAGCAGGAAAGCACTCTTATCTATGTCTGAACTATGCTAACTTCACCCAGAGCCTTATGTTCCACACCTTGCAGATGCTGGCATCTGATGACAGGTCATTCTGTTTTATACCAGTCTTCTAATGAAATTCGCCTTTAAACTTCTACGCATTTAGAAGTATAATTAGCTAGGAGAATTACACTGAAAGCTTGTCACAAGCTTATGATAAAATATCTAATAAAGTGATGCACCAAACCATTATACAATGCTTTAGTTAAAGCTGAATTAAACTGCACCATTTACTGTTAAATACATTTGTTAACGATAAACTTAAAGGTATAATTGAactaatacatacataaactaACAATACATTTACAATCCCATAGATATGCCTCGCAGGGACCTCATGAAGGTTTGTTTAGCCTTTTTAACACCTACCTCTGCTATCTCATAATCATGTAGCAGTTAGACAGTTAGCCTTCTCTTAGCTCCATCTGTGTGTTCAGGACCCGTTAGCGGTTCTAGCAGAGTGACACAGTTTTGCCTGTTTGCCTACATAATACTgaccagaggaaaaaaaaaatcaataaataatgttGCTTGTAAAAATGCTTTAGATCAGGCTTGGCTGTTGAACTATGATTGCAGGGctgctttaaaaatgtcatcAGTCTCAGTTGATGCAGGACGAACACCTCAATGCTGGACTTAaatcctctccttctcttccaCACAGCACTGACATAGTGCAATAACTCTGATGATGTCTGATAAATTTCACAGTTTGGTAGACTGTTGACTGTAACTATGACCTCATGGTAGCTGTATCTGAACGTTCTCAGTGTATTAAGAGGAAACTGTTAAAACTGTACCCATACTGCGAAATGTCATTTTGTATGTcgttttgtatgtttgtttctgtatgaacatttagtatatttttgtaatttatttttactcaaatatcatttaaatgtcATACGAAAATGGATTTGTTGCTGAAAAATGTTGGTCACAGTAGAAAATAATGGatagtgtcttttttttaaacatgttttgaaATATACAGCGGTCTACAGTGAACCACAGTCTACAGCGGTCTACAGTCCACTGCTTTTTTGTTATCCctattttgatgttttacatTGTGTTGTTTGATGGTATAGTTTAAAAACTCTAATCATATGTTAAGAGGTTGTGTGTAGAGTTCATACTGGCTGTGTCAGGGTTGTGAGGCAGTTACATATCATATCTATGTAGCATACCAGTATGTGCCACACTTCAAAATGAACGGTTTCaattaaaattacacaaaaactaCACTTTAATTTCACTAAAAACTGTGTTCTTGGAGATTTGCCTCCTGGCCAAGATAATCTCCAAATGCAAAACTGTGAAAAACTCTCAAAATTGCATTCAGCTGGTTAGTTGGGGTAGATGAagacatttaatgttaaaaactAAATATGTAAGAAGGaatctcaataataataataaggaacttataatcattattataaatgaatgaactcaATTAAAGGATGCATAAGATGTATAAGATGAGAAATTTGTATTATCTTGAGGCTTAGGGTGTAATGAAGCTTTGCGATTTGAGCTTCAGATTGTGCTCTTGTGAGAGATCAGATACTTGTTGCAGGTAGTGATACTAATTTCATGAAATGAAAGTGTTAAGGTAGGAATGTTTTTTATTGAATTCTATGAAGTGCAGTTCTATATTATGCAGTAAAAATGTACTGGTTATATTGTGAAGGAATATTAAGTCGTGCGTTGTCACAGTTTTCAAAGCCATAGGTGATATCAAAGTGGTTTACTTGTGTAAGTGATAGGAAAACTGTAACACTTTGATTAGCATATCAGCATTCAGCACTACTGCATGTGCTCCAGAGTGAAAAGGACAAGCTGAATGCACTGCTGTTGTCCAGTCCCTCCCCATATGTCTTACAATTAATATGATTGTGTTTAAATTGTACATAACACATAATTATATTTTCGTTTGTATAAATTGATGGTTTGTAATTAATAAAGTagcaatttatatattttcttttcttgttatgtgaaaataaagcagtaaTCCTTGCCA

Function

symbol description
tlcd2 Predicted to be involved in several processes, including membrane assembly; phospholipid homeostasis; and regulation of membrane lipid distribution. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TLCD2 (TLC domain containing 2).

NR:

description
PREDICTED: TLC domain-containing protein 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924427.2 True 3102 mRNA 0.39 4 11442749 11460409

Neighbor

gene id symbol gene type direction distance location
si:dkey-54n8.4 LOC108277674 coding downstream 2545 11426510 ~ 11440204 (-)
cluha cluh,cluha,LOC107664929 coding downstream 19963 11403246 ~ 11422786 (-)
pafah1b1a lis1a,pafah1b1,LOC108431306,LOC103047044,LOC102225619 coding downstream 40265 11374703 ~ 11402484 (-)
mettl16 mettl16,LOC107585611,LOC102789714 coding downstream 69962 11338483 ~ 11372787 (-)
mnta mnt,LOC105027537 coding downstream 106471 11319275 ~ 11336278 (-)
hif1al LOC100304653 coding upstream 39530 11499939 ~ 11512932 (-)
mmp20b LOC108277439 coding upstream 67648 11528057 ~ 11533961 (-)
tp53i13 tp53i13 coding upstream 76226 11536635 ~ 11546641 (-)
taok1a taok1a,LOC108277908,LOC108425880,LOC107585593,LOC107743657,LOC107664926,LOC107744793,LOC107592626 coding upstream 89228 11549637 ~ 11577496 (-)
dph1 dph1,LOC107664954,LOC107685060,LOC102789142 coding upstream 266114 11726523 ~ 11817784 (-)
G224361 NA non-coding downstream 17890 11424629 ~ 11424859 (-)
G224360 NA non-coding downstream 18881 11423561 ~ 11423868 (-)
G224358 NA non-coding downstream 44921 11394720 ~ 11397828 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding downstream 274081 11105571 ~ 11168668 (-)
G224086 NA non-coding downstream 372791 11069684 ~ 11069958 (-)
G224370 NA non-coding upstream 3839 11464248 ~ 11464691 (-)
G224371 NA non-coding upstream 5544 11465953 ~ 11466243 (-)
G224374 NA non-coding upstream 8683 11469092 ~ 11469362 (-)
G224375 NA non-coding upstream 11647 11472056 ~ 11473209 (-)
LOC113532936 NA non-coding upstream 154190 11614599 ~ 11644172 (-)
aipl1 aipl1,LOC106612843 other downstream 222093 11188250 ~ 11220656 (-)
appbp2 appbp2 other downstream 721416 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 1130233 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 1729690 9677259 ~ 9713059 (-)
G222809 oaf other downstream 2495850 8941018 ~ 8946899 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 928457 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 974797 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 1460554 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 1480501 12940910 ~ 13007559 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other upstream 1609727 13070136 ~ 13080860 (-)

Expression


Co-expression Network