LOC113532837 (LOC108277602)


Basic Information

Item Value
gene id LOC113532837
gene name LOC108277602
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8122414 ~ 8137209 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924504.2
aTGCAGAGTACAAGAGAGAACAGTAACTCAagcaataattttttatttaatttttcaagGCCATTGAATGAGAAGATCTTGCTGTTGCAGATCCTGGTTGGGATTTTTCTCTATATAAACTGCTTGATGATATTcacatttctaaaaaaagaGGTGTTTAGGGAGGAAACGCGATACATTTTGTTTGCACAGACCTTATTTGTGGATACTGCTTTCATACTGTTATCTGACTTGCTTTCAGTTGGGACTTATTTCCAGTACGCTATGCACATGGGTATTTGTACTCTCGGCTATGTAATTCAGAGCTTTTTCAGCTGCTGTACACCACTGACTTTGGTGGCTATGTGTCTGGAACGCTATGTGGCTATATGCATGCCTTTGAGGTATGCTGACATCTCCACAAGCAGGACCAGATTATATGGGCTTTTTATCATATGGAGTATCAGTTCTATAATTCCAGTGTTCAACTGTATAGGATATTGGGCAGCAGCCCCACCTGCTGCTCTGTTCTCCTATGCTGTGTGTAATGCAGAGATAATGTTAGTCGAAGAATGGCAGGCACATGGTCGTGCTGCAATTTATGTtatccttttcatttttatggtCGTTATCATTGTCTTCACCTACATCAAGATAATGATTGCAGCCAGAGctgcttcctctgagaaaaagaaatcaaCCAATAAGAGTCTCAGAACTGTGCTGCTTCATGGCATTCAGCTCTTTCTGTGCATAATGCAGTTGTTTAACCCATATATAGAAATGGCATATTGGAAGGTTGAAGAAATGACACTTAGGAATATAAAATATTCcaatttaatagtttttttgtttgtaccacGTAGTCTTAGTCCATTGATTTATGGTCTCAGAGATGAAAAATTTTTCCATGTTTTAAGACATTATGCTTTGTGTGGTGATAATCACCAGCACCTGCTTTTTGACTACCTGGCTCGGTCGGTGATGGCATATAAGATCGACACCACGCtggcaTCAAAAATGAAGCAACGGTTTGATAAAGTAAGTGTAAAACGAGAGTTCCGAGTCGGCGACCCTGTTTTAGTACTAGACCTTTTAGTACCTGTACCTGGTACAGTTTTCTCCGCAAAATTCACAGGTCCTTAcactgtggagaaaaaaattattgagACAGATTATGTCATAAAAACCCCTGATCGTCGCAGGAAGATGAGAGTCTGTCATGTGAACATGTTGAAGCCCTATTTAAAACACGAAGAGACAAGCTCGCCCCCGTCACTGGTCACCTCTGGCATTGTCTCTGTCAATGACGTCATAAAGGATGAGGTGGAAGAGGTTACTCATGTTTCTACTTGTGTGTTACATCACGATGTGGATGTAGGAGATGCTTCTCTGATAAAACGACATCCATACTGCGTGAACCTCCATAAACGCGAAATAATGAAAGCTGAGGTGGAGTATTTGTTGCAACATGATTTAGCTGATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924504.2 True 1467 mRNA 0.40 3 8122414 8137209

Neighbor

gene id symbol gene type direction distance location
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding downstream 214556 7745299 ~ 7907858 (-)
jam3a jam3 coding downstream 530596 7578055 ~ 7591818 (-)
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding downstream 546137 7571201 ~ 7576277 (-)
acad8 acad8,LOC107582571 coding downstream 558820 7549827 ~ 7563594 (-)
lim2.3 lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599 coding downstream 746349 7372414 ~ 7376065 (-)
dixdc1a dixdc1 coding upstream 66453 8203662 ~ 8212072 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding upstream 354579 8491788 ~ 8498469 (-)
il4i1 il4i1 coding upstream 365485 8502694 ~ 8512202 (-)
sik2b LOC108277697,LOC108436519,LOC107657230 coding upstream 425961 8563170 ~ 8613424 (-)
laynb LOC108277700 coding upstream 478228 8615437 ~ 8630154 (-)
LOC113532601 NA non-coding downstream 545358 7576554 ~ 7577056 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding downstream 750094 7371370 ~ 7372320 (-)
G221844 NA non-coding downstream 901485 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 944118 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 998212 7122717 ~ 7124202 (-)
G222377 NA non-coding upstream 25424 8162633 ~ 8162848 (-)
G222391 NA non-coding upstream 59596 8196805 ~ 8197207 (-)
G222522 NA non-coding upstream 103855 8241064 ~ 8242176 (-)
G222591 NA non-coding upstream 327367 8464576 ~ 8491284 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding upstream 407703 8544912 ~ 8548374 (-)
zgc:77784 LOC108277423 other downstream 658915 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 1468996 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 2098061 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 2318441 5797928 ~ 5803973 (-)
G220990 NA other downstream 2411523 5710098 ~ 5710891 (-)
sorl1 sorl1,LOC107717255 other upstream 267620 8404829 ~ 8478912 (-)
G222809 oaf other upstream 803809 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 1540050 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 2170841 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 2571043 10708252 ~ 10721333 (-)

Expression


Co-expression Network