LOC113532847 (LOC108277604)


Basic Information

Item Value
gene id LOC113532847
gene name LOC108277604
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5621506 ~ 5622471 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924516.1
ATGTGTACAGAGAAGTGTAACAGCAGTCATCATTTGCAACTGGTCCATTCAGCATCAATAAGGTTGAATGTATCAATGGCCATAACCCAGATCTTTGTGTGGCCATTCATCTACATCAACATCCTCATGCTTCTTACATTTTCCAGAAAACAAGCCTTCAGAACTGAAACACGCTATATACTGTTTGCCCATACCTTATTTGTGGACTTGATGTTTCTTGTGCTGACAGATTTTGTAGTAATTCTCTCATACAGCTATGTACTGATGCCCATGGCATTCTGTATTCCATTTTGCATGCTCATGGAGACAATAACAACATGCACACCGCTAACTATCACCGCAATGTGTGTGGAACGTTACGTGGCCATTTGCATGCCGTTGAGACATAGTGCTATCTCTACTGTTAGCAGGACCCTTACAGCTATTTTTATCATTTGGATCATAAGCTCCCTAAAGTCATTTGTGGATGTTTTCATCCTTGTCATAACTGCCTCGAAAGAATATCTGTCTCAGTATACCTTCTgtcattatgaaattatgatGCCAGAAAACTGGCACCGTGTAATGAGGGGTGCtgtatatattattcattttataatggTTTTACTTGTTGAGTTATTTTGCTATGTTATGATTGTGATCTCTGCCCGAGCAGCCTCGATTGACAAGAAGTCAGCAATCAAAGGTCTGCGCACTGTCTCTTTGCATATGCTTCAGCTTACACTGTGTACTGTTGAAATTATTTGTCCCTATATTGAAACATTAATCATGGAGAAAGATATTCAGTTATATTTGTCAGTTCGCTTTTTCAATTTCataatgtttaatgtcattGCCAGGGCAATCAGTCCACTTGTTTATGGCCTAAGAGATGAAAGATTTTATGCTACCCTACTGTACTACATCAGATGTAGACAAAATCATGTTTCGTCTGAAAGTCCCAAATGCAAAGcaataatagaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924516.1 True 966 mRNA 0.38 1 5621506 5622471

Neighbor

gene id symbol gene type direction distance location
diabloa LOC108278350 coding downstream 12491 5606704 ~ 5609015 (-)
si:ch211-149e23.4 LOC108278242 coding downstream 72459 5536198 ~ 5549047 (-)
LOC113532491 dnhd1 coding downstream 133262 5451275 ~ 5488244 (-)
LOC113532789 flj13639,LOC108278219,LOC108433977,LOC103025652,LOC107725108,LOC107670134,LOC107669913 coding downstream 218188 5393818 ~ 5403318 (-)
kbtbd3 kbtbd3 coding downstream 478539 5137303 ~ 5142967 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding upstream 110264 5732735 ~ 5743421 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding upstream 146156 5768627 ~ 5772520 (-)
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding upstream 164542 5787013 ~ 5796975 (-)
synrg synrg coding upstream 316581 5939052 ~ 5975719 (-)
hnf1ba hnf1b coding upstream 366947 5989418 ~ 6003349 (-)
G220884 NA non-coding downstream 117564 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 132498 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 166583 5454596 ~ 5454923 (-)
G220834 NA non-coding downstream 177804 5443492 ~ 5443702 (-)
G220826 NA non-coding downstream 204511 5416785 ~ 5416995 (-)
G221026 NA non-coding upstream 172657 5795128 ~ 5795453 (-)
G221068 NA non-coding upstream 247930 5870401 ~ 5870627 (-)
G221214 NA non-coding upstream 469442 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 580593 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 703620 6326091 ~ 6416808 (-)
nectin3a LOC108278241 other downstream 22131 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 649987 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 1804671 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 1814392 3727377 ~ 3807114 (-)
G219651 NA other downstream 2710341 2907326 ~ 2911165 (-)
G220990 NA other upstream 87627 5710098 ~ 5710891 (-)
LOC113532612 LOC108277970 other upstream 175457 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 398674 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 996701 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1769944 7392415 ~ 7463499 (-)

Expression


Co-expression Network