LOC113532877 (LOC108277444)


Basic Information

Item Value
gene id LOC113532877
gene name LOC108277444
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6831234 ~ 6840971 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924556.2
CACGCACTGCTTGGGTCATTCTGTCACCAGCGCGCTGACGTTGGATAATTAAGACATGCAATTAAGGGCACTACAGATTCTTGCATGGTATTTTTGGAGGGCATCTCTGCACTAATTAACAATGTTCGTCCAGttggggttttattttttaaacttcctGCTTATCACCAATTTATCCATGTGTGTAGAAATCGATTTTTGCGAACTTGTGCAACTTGGCAGCGCAGCCAGTGAGAACGGGGAGATAAGAACGGATAGCAGCATGGTTTTTCAAATGAACGCTTTTAAACAGCTCTTCCAGCTGAACGTCGTACCTGACTCCAGTTTTCTCGCACCTGACATCGCGTATGAGAGACATACAGGAGCAGTATCCTCTCTGCACCGCTGCTTCTACTCCGGGGATGTGAACTCGGACCCTTCCTCCTCCGCggctctcagtgtgtgtggaggagtgCGCGGCGCGTTTTCTTATAACGGTATGGAATACGATTTCCAGGTCAGAGGGAATGAGACCGTTGATGGATTTCCCTCAAGCGCTGGAAAGACGCACATTATACGCCGCCGGACTCACTATAATGTCACTTCAAGATGTGGAGTAACATCTGGAATGAACCCAGGCACTGCAGAATCACTGCAAATGCGCGAGCGCGTAAAGACGCACGCAGAAATACGAACCAAGGCTGCTCTGAAGGGCACAAACAGGACCAAAAGGTTCGTTTCTCTGCCCAGGTATGTGGAGGTGTTGATTGTAGCTGACGAGTCCATGGCCAAGTTCCATGGGGACGACCTGAGACATTATCTTTTGACTCTTATGGCTGTTGCTGCCAAGCTGTACCGGCACCCCAGCATCATGAACCTCATCAACATTGTAGTAGTGGATGTGCTGGTGATTTATGAGCCTGAGGAAGGACCCAAGATCTCCAGCAATGCTGCTGTCACACTGCGCAACTTCTGCACCTGGCAGAGAAGGTTGAACAAGGCGAATGACAAACACCCCGAGTACTGGGACACTGCTATTCTGTTCACAAAGCAGGACTTGTGTGGGGCTACCACCTGTGACACCCTGGGCATGGCTGATGTTGGAACCATGTGCGATCCCAAAAGAAGCTGTTCAGTTATTGAGGATGATGGTCTACCTTCAGCCTTCACCACAGCACATGAATTAGGCCATGTCCTCAATATGCCACATGACAATGTGAAGGCCTGTGAGATGTTTGGGAAACTAAAGGACAACCACATGATGTCCCCTACCCTCATCCAGATTGATCGCAACAGTCCCTGGTCCAGCTGCAGTGCAGCCATTGTGACCAACTTCCTGGATGCCGGCCATGGTGACTGTCTACTGGACAAGCCCCAGAAAGTGCTTGTGCTACCAGATGATCCTCCGGGAACTGCCTACAGCCTCAGCCGACAATGTGAGTTGGCATTCGGCTCTGGGTCAAAGCCCTGCCCGTACATGCAAGCCTGCTCAAAGCTGTGGTGTACAGGAAAGGCCAGGGGACATCTGGTGTGCCAGACTCGCCACTTCCCCTGGGCTGATGGCACCAGCTGTGGTAACAACAGGATATGCTACAGGGGTGCTTGCACTAATAGGAACACCACAATTAAACTCACGGTAGATGGACAGTGGGCTAAATGGGGAGCATATGGATCTTGCTCTCGAACATGTGGCGGAGGAGTTCAGTTGGCAAAAAGGGAGTGCAGTAGCCCTGTTCCAGAGAATGGGGGCAAATACTGCCAAGGCCTGCGTGTAAAATATCGCTCCTGCAGTCTGGAGCCATGCAAATATTCAGGCAAAAGTTTTCGTGAGGAGCAGTGCGAGTCTTTCAATAACTTCAGCCTCAACACCAACAGACTTGGACCCTCTGTGACATGGATCCCTAAATACTCTGGAGTTTCTCCAAAAGACAGATGCAAGCTTATCTGCAGAGCCAGTGGCACAGGATACTTTTACGTACTTGCTCCAAAGGTTGTGGATGGAACGCTCTGCTCCCCAGATACTTCAGCAGTCTGTGTTCAAGGAAAGTGCATTAAAGCAGGTTGTGATGGAAAGCTGAGCTCAAACTTAAAGTTTGAcaagtgtggtgtgtgtggagggaaCAACCAGTACTGCCAAAAATTCTCTGGAGTGTTCACCAAACCTGTACACGGATATAACTTTGTGATCACTCTACCAGTTGGAGCCTCAAATGTAGACATTAGGCAACGTGGCTACCGTGGTTTGGTAAATGATGACAACTACTTAGCCATCAAGAACATTCATGGTCAGTACCTTCTCAATGGGAATTATGTGGTATCTACTGTTGGGCAACACATCATTGTAAATGGCACTACACTGCGCTACAGTGGAACATCCACAGCTGTGGAGAAGCTGCAGGCACTGAGACCTCTCCAGGAGCCCCTGACAGTGGAGGTGCTGTCTGTGGGGAAAATGACACCTCCCCGTGTTCGCTATTCATACTACCTGACCAAGGTCAAAGAGGGGAAGATTctgaagaaggaggagaagaagcaTGTACAGAACAGCATTCTGGTAGACACCAACAAGGTGCAACTAAAAAAGCTAGCCTATCAGAAACCTTCCAGTAAATGGGTTGCCAGTGACTGGGAAGAGTGTTCTGTAAGCTGTGGCAATGGCTTTCAGAAAAGACTTGTCCAGTGCCTGGACTCAAATGGGAAAGCAACTGCATATTGTGACAGCACCCAAAGGCCTAGTTCTCAGAAGGTTTGTGGTGACCCTTGCCCTATGTGGAGTATCGGTGAGTGGTCTGCTTGCTCAAAAAGCTGTGGGAAAGGTTTCAAAAGAAGGCCTGTACGCTGTATCACACAAACTGGGCTACTCCTACCCAGAGACCACTGCTCAAGCAAGAGGAAGCCCCAAGAACTGGATTTCTGCACTGTTCAAACCTGCTAGAGACTTGTTAAGACTTGCTAGAACTCCTTTAAGCATTGCAGACATGGTCTATAGAACTGTTCTTTTCAGTCTAACAAAACATCTTGAATTACGTTTGCTGTCACTTGTGTCTCTCATGGTACCTCACATGTGTACCATGATTCAACAGGAGACAGTGACCGGTGAGACTGCAGACACACATGATTGGAAAGGCTGAGGTACAaacgttatcatttctgtgaTGATTTGAAGTCACATGTAACCTACCTCGAAAAGACACTGATCATAGTACAAGATCATTTGTTTTATGATCATAACATTCATCTTTATGTTGCAAAAATTgacatatacaaaataaataggGTTATAAATAGGGTTCGAGATTACAGTGAAAGAATCTGATTTTCCTTAGGTGCATGGGTTAAATGTGAAGCATTGCTCGTGCActacaaaatattataatattggtTTCATTTGTTGATTCTGTCTTTGTACTGCAAAATATCCTCACTTCATGCTTTCTAGTATAACTACATTCACAATTAAACAGACACACAAGTAAAACCACACAGGCAAAAACTGTTTGTGACAAAATATTTGTCATTTcctattttaaacatttgtataTGTGAATCACATTTAATTGTAGGCATTTGTAATTGTTGAATACAGTATTTCCCATCAGTGTGATTATTTTACCCTATCAGTACACTCTAGCTGCAAATATGATGACTTTGTTCCCATCAACATGTTCCTCCATGTTCCTTCAAAGTAACTGAACCCACTTGTGTATACTGGTTTCATTCTCTGCTGTATTTGAGGAGATCTTTTCTGTCTAGTTAGACAAGACTTAAATATCTATTGctgtttatgattttatttaggAAGGGTTAggaaacttttttctttctaaaaactCATTCTGAGGATTGGTTCTGTATGTTGTATCTTTTGACGTAGTACGAAGCACTTATATTTTGTTACCAGTTTCCTttgtatactgtgtatacatTATTGTAACTgtgcataaataaacatttatgcatGA

Function

GO: NA

KEGG:

id description
K08629 ADAMTS15; a disintegrin and metalloproteinase with thrombospondin motifs 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924556.2 True 3941 mRNA 0.45 8 6831234 6840971

Neighbor

gene id symbol gene type direction distance location
tubd1 tubd1,LOC107581164 coding downstream 74968 6748916 ~ 6756266 (-)
LOC113532622 NA coding downstream 226170 6583963 ~ 6605064 (-)
itgae.2 NA coding downstream 251273 6558532 ~ 6579961 (-)
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding downstream 276783 6536048 ~ 6554451 (-)
mrpl28 mrpl28,LOC107659942,LOC107554268 coding downstream 298350 6527472 ~ 6532884 (-)
LOC113532633 pou2af1 coding upstream 42157 6883128 ~ 6888991 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding upstream 90551 6931522 ~ 6936069 (-)
phldb1b phldb1,LOC108277892 coding upstream 118152 6959123 ~ 7039860 (-)
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding upstream 322986 7163957 ~ 7172748 (-)
map6b LOC108277516 coding upstream 333381 7174352 ~ 7186264 (-)
G221659 NA non-coding downstream 24867 6806155 ~ 6806367 (-)
G221633 NA non-coding downstream 69447 6760656 ~ 6761787 (-)
G221638 NA non-coding downstream 71616 6759410 ~ 6759618 (-)
G221618 NA non-coding downstream 142923 6687589 ~ 6688311 (-)
G221448 dnhd1 non-coding downstream 316269 6513828 ~ 6514965 (-)
G221681 NA non-coding upstream 26813 6867784 ~ 6870274 (-)
G221682 colca2 non-coding upstream 30766 6871737 ~ 6871979 (-)
G221683 colca2 non-coding upstream 31860 6872831 ~ 6873359 (-)
G221812 NA non-coding upstream 281746 7122717 ~ 7124202 (-)
G221814 NA non-coding upstream 292546 7133517 ~ 7178296 (-)
LOC113532805 NA other downstream 177816 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 806881 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1027261 5797928 ~ 5803973 (-)
G220990 NA other downstream 1120343 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1231859 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 551444 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1563858 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2100047 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2836288 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3467079 10308050 ~ 10312516 (-)

Expression


Co-expression Network