rab34a (rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499)


Basic Information

Item Value
gene id rab34a
gene name rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5787013 ~ 5796975 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924574.2
CAGAGGGATGTTCTGGAAAAGCCGCTCGGAATGAATGTGCATGCCACTTCCGTAGCCTGGAGCTCACAAAAAAGTTTTCCTCTTAATGGTGCGACCAAACATAAGGACTAAATAGGACTAAAGTGAATTTAAAACACAACTGTTTGGCGATAGCGACGCTTTTAAAAAGAGCAAATCACATCTGTGCTGAGGGCCTTCATCATGAGCGTCCTACCTCCTGTGCGCAAGGACCGCGTCATTAGCCAGCTTCCTAAGTGCTTCAGTAAAGGGGCCACTTTACACACAGAAGATGGATTTAATGCCAAGGTGAAGACAGCTTGCCAGGAGCAGAGAACTGGCACTGTGGGGTTTAAAATCTCCAAGGTTATTGTAGTTGGAGACTTGGCTGTAGGGAAAACCTGTCTGATTAATAGATTTTGCAAAGATGTCTTTGACAAAAATTACAAAGCTACCATTGGTGTAGACTTTGAGATGGAGAGGTTTGAGGTGCTTGGGGTTCCATTCAGCCTCCAGCTGTGGGACACTGCAGGTCAGGAAAGGTTCAAATGCATCGCTTCCACATACTACAGAGGAGCTCAGGCCATAATAATTGTTTTTGATTTGACTGATGTGGCCTCGCTACACCATACCAGGCAATGGCTGGAGGATGCTATGAAAGAGAACGACCCCACCAGTGTGTTACTCTTCTTGGTGGGCACAAAGAAAGATCTCATTTCCCCGGCACAGTATTCTTTTAATGAACAGGATGCCATTAAAGTGGCCCAAGAGATGAAAGCGGAGTACTGGGCTGTGTCTGCTTTGTCTGGGGAAAATGTGAGGGAGTTTTTCTTCCGTCTGGCATCACTAACATTTGAGGCCAACGTGTTGGCAGAGCTGGAAAAAAGCAGCTCCAGGCGCATTGGGGATGTTATCAaaatCAGCAACACCACCAGTAACTTGTATGCAACGTCTAAAAAGAAACAGTCGAACTGCTGTCAGTAAAGGGATTGAACAATTTGAGAAATTTGCACTGAATTAAATGATGGTACCAAAGCAGAAACTATAGGTACAGATGAACAAGGGAGActataaagtgttttaaaaagatttttttttttaagaatatgtGGTTAGGACAGGCTGGAGTAAACATTCCTTGGTagtattttttctctttttcatttctgtgattaaattttttttggtcGTA
>XM_026924575.2
ACACTAACTAGCGCACTAAGCAGAGTGCTAAAGCTCGCCGCCGGCGGCCAGACAGCAGCGCGCGCACTGTGTAGTGCGCTAGTGTGCCTGAGGTCAGGAATTCTCCAGCTGTGTAAACTAGGGTCTGCTTTGTTCCCAGGGCCTTCATCATGAGCGTCCTACCTCCTGTGCGCAAGGACCGCGTCATTAGCCAGCTTCCTAAGTGCTTCAGTAAAGGGGCCACTTTACACACAGAAGATGGATTTAATGCCAAGGTGAAGACAGCTTGCCAGGAGCAGAGAACTGGCACTGTGGGGTTTAAAATCTCCAAGGTTATTGTAGTTGGAGACTTGGCTGTAGGGAAAACCTGTCTGATTAATAGATTTTGCAAAGATGTCTTTGACAAAAATTACAAAGCTACCATTGGTGTAGACTTTGAGATGGAGAGGTTTGAGGTGCTTGGGGTTCCATTCAGCCTCCAGCTGTGGGACACTGCAGGTCAGGAAAGGTTCAAATGCATCGCTTCCACATACTACAGAGGAGCTCAGGCCATAATAATTGTTTTTGATTTGACTGATGTGGCCTCGCTACACCATACCAGGCAATGGCTGGAGGATGCTATGAAAGAGAACGACCCCACCAGTGTGTTACTCTTCTTGGTGGGCACAAAGAAAGATCTCATTTCCCCGGCACAGTATTCTTTTAATGAACAGGATGCCATTAAAGTGGCCCAAGAGATGAAAGCGGAGTACTGGGCTGTGTCTGCTTTGTCTGGGGAAAATGTGAGGGAGTTTTTCTTCCGTCTGGCATCACTAACATTTGAGGCCAACGTGTTGGCAGAGCTGGAAAAAAGCAGCTCCAGGCGCATTGGGGATGTTATCAaaatCAGCAACACCACCAGTAACTTGTATGCAACGTCTAAAAAGAAACAGTCGAACTGCTGTCAGTAAAGGGATTGAACAATTTGAGAAATTTGCACTGAATTAAATGATGGTACCAAAGCAGAAACTATAGGTACAGATGAACAAGGGAGActataaagtgttttaaaaagatttttttttttaagaatatgtGGTTAGGACAGGCTGGAGTAAACATTCCTTGGTagtattttttctctttttcatttctgtgattaaattttttttggtcGTA
>XM_026924576.2
CGCCGCCGGCGGCCAGACAGCAGCGCGCGCACTGTGTAGTGCGCTAGTGTGCCTGAGGTCAGGAATTCTCCAGCTGTGTAAACTAGGGTCTGCTTTGTTCCCAGATTTGCAGGATTAGCATGGCAGATTAGTCAGACATCATCATGGCCACATTCTTTACTGAATGGCTGCTTACAGATCAGCAGAGTCTGTAACGGGACCTGCAGCGGGCCTGGTGGAGGCGAGGCGACGGTATGAGCAGCGTTTAACTCGGTATCACTGTGTGCAGTGCAGCTCGGTATCTGCTCCTGACCTCCCATCCCCAAACAGATCAACCAGAGTGAAGGGCCTTCATCATGAGCGTCCTACCTCCTGTGCGCAAGGACCGCGTCATTAGCCAGCTTCCTAAGTGCTTCAGTAAAGGGGCCACTTTACACACAGAAGATGGATTTAATGCCAAGGTGAAGACAGCTTGCCAGGAGCAGAGAACTGGCACTGTGGGGTTTAAAATCTCCAAGGTTATTGTAGTTGGAGACTTGGCTGTAGGGAAAACCTGTCTGATTAATAGATTTTGCAAAGATGTCTTTGACAAAAATTACAAAGCTACCATTGGTGTAGACTTTGAGATGGAGAGGTTTGAGGTGCTTGGGGTTCCATTCAGCCTCCAGCTGTGGGACACTGCAGGTCAGGAAAGGTTCAAATGCATCGCTTCCACATACTACAGAGGAGCTCAGGCCATAATAATTGTTTTTGATTTGACTGATGTGGCCTCGCTACACCATACCAGGCAATGGCTGGAGGATGCTATGAAAGAGAACGACCCCACCAGTGTGTTACTCTTCTTGGTGGGCACAAAGAAAGATCTCATTTCCCCGGCACAGTATTCTTTTAATGAACAGGATGCCATTAAAGTGGCCCAAGAGATGAAAGCGGAGTACTGGGCTGTGTCTGCTTTGTCTGGGGAAAATGTGAGGGAGTTTTTCTTCCGTCTGGCATCACTAACATTTGAGGCCAACGTGTTGGCAGAGCTGGAAAAAAGCAGCTCCAGGCGCATTGGGGATGTTATCAaaatCAGCAACACCACCAGTAACTTGTATGCAACGTCTAAAAAGAAACAGTCGAACTGCTGTCAGTAAAGGGATTGAACAATTTGAGAAATTTGCACTGAATTAAATGATGGTACCAAAGCAGAAACTATAGGTACAGATGAACAAGGGAGActataaagtgttttaaaaagatttttttttttaagaatatgtGGTTAGGACAGGCTGGAGTAAACATTCCTTGGTagtattttttctctttttcatttctgtgattaaattttttttggtcGTA
>XM_026924577.2
CTAAAGCTCGCCGCCGGCGGCCAGACAGCAGCGCGCGCACTGTGTAGTGCGCTAGTGTGCCTGAGGTCAGGAATTCTCCAGCTGTGTAAACTAGGGTCTGCTTTGTTCCCAGATCAGCAGAGTCTGTAACGGGACCTGCAGCGGGCCTGGTGGAGGCGAGGCGACGGTATGAGCAGCGTTTAACTCGGTATCACTGTGTGCAGTGCAGCTCGGTATCTGCTCCTGACCTCCCATCCCCAAACAGATCAACCAGAGTGAAGGGCCTTCATCATGAGCGTCCTACCTCCTGTGCGCAAGGACCGCGTCATTAGCCAGCTTCCTAAGTGCTTCAGTAAAGGGGCCACTTTACACACAGAAGATGGATTTAATGCCAAGGTGAAGACAGCTTGCCAGGAGCAGAGAACTGGCACTGTGGGGTTTAAAATCTCCAAGGTTATTGTAGTTGGAGACTTGGCTGTAGGGAAAACCTGTCTGATTAATAGATTTTGCAAAGATGTCTTTGACAAAAATTACAAAGCTACCATTGGTGTAGACTTTGAGATGGAGAGGTTTGAGGTGCTTGGGGTTCCATTCAGCCTCCAGCTGTGGGACACTGCAGGTCAGGAAAGGTTCAAATGCATCGCTTCCACATACTACAGAGGAGCTCAGGCCATAATAATTGTTTTTGATTTGACTGATGTGGCCTCGCTACACCATACCAGGCAATGGCTGGAGGATGCTATGAAAGAGAACGACCCCACCAGTGTGTTACTCTTCTTGGTGGGCACAAAGAAAGATCTCATTTCCCCGGCACAGTATTCTTTTAATGAACAGGATGCCATTAAAGTGGCCCAAGAGATGAAAGCGGAGTACTGGGCTGTGTCTGCTTTGTCTGGGGAAAATGTGAGGGAGTTTTTCTTCCGTCTGGCATCACTAACATTTGAGGCCAACGTGTTGGCAGAGCTGGAAAAAAGCAGCTCCAGGCGCATTGGGGATGTTATCAaaatCAGCAACACCACCAGTAACTTGTATGCAACGTCTAAAAAGAAACAGTCGAACTGCTGTCAGTAAAGGGATTGAACAATTTGAGAAATTTGCACTGAATTAAATGATGGTACCAAAGCAGAAACTATAGGTACAGATGAACAAGGGAGActataaagtgttttaaaaagatttttttttttaagaatatgtGGTTAGGACAGGCTGGAGTAAACATTCCTTGGTagtattttttctctttttcatttctgtgattaaattttttttggtcGTA

Function

symbol description
rab34a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endocytosis and phagosome-lysosome fusion. Orthologous to human RAB34 (RAB34, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-34-like isoform X2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07921 RAB34; Ras-related protein Rab-34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924574.2 False 1189 mRNA 0.43 11 5787013 5796975
XM_026924575.2 False 1137 mRNA 0.45 11 5787013 5796750
XM_026924576.2 True 1323 mRNA 0.46 12 5787013 5796715
XM_026924577.2 False 1258 mRNA 0.46 12 5787013 5796723

Neighbor

gene id symbol gene type direction distance location
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding downstream 14493 5768627 ~ 5772520 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding downstream 43592 5732735 ~ 5743421 (-)
LOC113532847 LOC108277604 coding downstream 164542 5621506 ~ 5622471 (-)
diabloa LOC108278350 coding downstream 177998 5606704 ~ 5609015 (-)
si:ch211-149e23.4 LOC108278242 coding downstream 237966 5536198 ~ 5549047 (-)
synrg synrg coding upstream 142077 5939052 ~ 5975719 (-)
hnf1ba hnf1b coding upstream 192443 5989418 ~ 6003349 (-)
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding upstream 228488 6025463 ~ 6028603 (-)
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding upstream 232271 6029246 ~ 6033511 (-)
rskra LOC108277445 coding upstream 238098 6035073 ~ 6047606 (-)
G220884 NA non-coding downstream 283071 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 298005 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 332090 5454596 ~ 5454923 (-)
G220834 NA non-coding downstream 343311 5443492 ~ 5443702 (-)
G220826 NA non-coding downstream 370018 5416785 ~ 5416995 (-)
G221068 NA non-coding upstream 73426 5870401 ~ 5870627 (-)
G221214 NA non-coding upstream 294938 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 406089 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 529116 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 619907 6416882 ~ 6417625 (-)
G220990 NA other downstream 76122 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 187638 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 815494 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 1970178 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 1979899 3727377 ~ 3807114 (-)
LOC113532612 LOC108277970 other upstream 953 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 224170 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 822197 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1595440 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2607854 8404829 ~ 8478912 (-)

Expression


Co-expression Network