srsf1a (srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230)


Basic Information

Item Value
gene id srsf1a
gene name srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6025463 ~ 6028603 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924598.2
CGCGAGTTTCCGGGATTCTTCCGCGCCGCCGCCGCGCGCGGGTCATGGAGAGGAAGTGAAGGCGCGAGCGCGCAGTGCAGGTGGAGCGCCACGCGCTTATTGTCTTGTGTGCACAGGAAGGCTGAATCCCGCTGTTTACCGCCGCACGCTTTCTTTTTGCCATGTCTGGAGTGATCCGAGGCCCAGCTGGTAGCAACGACTGCCGGATTTATGTAGGAAACCTTCCTCCTGATATCCGCACTAAAGACGTCGAGGACGTGTTCTACAAGTACGGAGCGATCCGAGATATCGATCTGAAAAACCGACGAGGTGGCCCTCCGTTTGCCTTTGTCGAGTTTGAAGACCccagGGACGCCGAGGACGCGGTGTATGCTCGGGACGGCTATGACTACGACGGCTACCGGCTCCGGGTGGAGTTTCCCAGAAGTGGACGCGGTATGGGGAGAGGAGGCTTCGGTGGAGCTCCCAGAGGCAGATACGGACCTCCATCCAGGCGATCTGAATACAGAGTCATTGTTTCAGGGTTACCACCCAGCGGCAGTTGGCAAGATCTGAAGGATCACATGCGTGAAGCAGGTGATGTATGTTATGCTGACGTTTTCCGAGATGGGACCGGTGTGGTGGAGTTTGTGCGCAAAGAAGACATGACCTACGCTGTTCGAAAACTGGATAACACTAAATTCCGGTCACATGAGGGGGAAACCGCATATATCCGTGTGAAAGTGGATGGTCCACGCAGTCCAAGTTACGGAAGATCAAGGTCCCGGAGCCGCAGTCGCAGCAGAAGTCGCAGTCGCAGCAACGAGCGTAGCCGCAGCTACTCGCCGCGCCGTGGCCGAAGCTCCCCACAGTACTCCCCCCGGCACAGCCGCTCTCGCTCTCGTTCCTAAGCCGTCCACTCGCCACCGCTGTGGTGTTTTGGGTTTGAGATTCCCTTCCCCTGTTTTTTGGTGAAGCTGTTGAGTCAGTCTGTTGGTTTTtaccctcctccctcctccttttttaaatattagttttagttttttttcccctccgtGTCTTCGTTATGACCTTTGTTTTCTGATTGCCCCTGCCCCCGTCCTCCACCCCTCTTCTTAACCATCAACACCCATCTAATTTTTAACAATGCTTTTTAAAGGACTAAGTTGACTCCCTCACATTCTCGCCTTTCTTTTGTCCTCTTTTGAATACAAGATGGAACTCTCATTGACCAAACAAAGAGTTGTTCAATGCCtctgaatatttttgtaaatgccATCTACTGTCTTTCATGAGAGTGAGCTCACATGTATTTTACCCTTTTGTCTTCCTGTAGTCGCTTGACAAGAAGAATGAACTGATACTTTGTAATAAAGAATTGCCGAATCATTTGA

Function

symbol description
srsf1b Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be active in nuclear speck. Orthologous to human SRSF1 (serine and arginine rich splicing factor 1).

NR:

description
PREDICTED: serine/arginine-rich splicing factor 1B

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12890 SRSF1, SFRS1, ASF, SF2; serine/arginine-rich splicing factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924598.2 True 1373 mRNA 0.52 5 6025463 6028603

Neighbor

gene id symbol gene type direction distance location
hnf1ba hnf1b coding downstream 22114 5989418 ~ 6003349 (-)
synrg synrg coding downstream 49744 5939052 ~ 5975719 (-)
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding downstream 228488 5787013 ~ 5796975 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding downstream 252943 5768627 ~ 5772520 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding downstream 282042 5732735 ~ 5743421 (-)
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding upstream 643 6029246 ~ 6033511 (-)
rskra LOC108277445 coding upstream 6470 6035073 ~ 6047606 (-)
LOC113532842 kiaa0100,LOC107661106,LOC107727920 coding upstream 20850 6049453 ~ 6080648 (-)
glod4 glod4,LOC102784280 coding upstream 55137 6083740 ~ 6087090 (-)
nxn nxn,typx coding upstream 66067 6094670 ~ 6156851 (-)
G221068 NA non-coding downstream 154836 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 230010 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 521521 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 536455 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 570540 5454596 ~ 5454923 (-)
G221214 NA non-coding upstream 63310 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 174461 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 297488 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 388279 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 485225 6513828 ~ 6514965 (-)
dynll2a dynll2a,LOC107554284 other downstream 1110 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 221490 5797928 ~ 5803973 (-)
G220990 NA other downstream 314572 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 426088 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1053944 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 590569 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1363812 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2376226 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2912415 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3648656 9677259 ~ 9713059 (-)

Expression


Co-expression Network