LOC113532896 (leg9)


Basic Information

Item Value
gene id LOC113532896
gene name leg9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 13017057 ~ 13023215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924602.2
TAGCGGTGATAGTCTCCGCCCACTTCCGGACAACTTGCAGACCGCTATCGAAAGTTGATGCGCCTTCCACAAAACTGCACCTACaagattaaagggaaaaaacaaacaaataaactagGAGTAAACCATCGGATTGCATCTGATTTATAAGGGAAATGGCATATTACTACCAGCAACAGCCATTTTACAACCCACAAATCCCGTTTACTGGCTCAATCCAAGGAGGCTTGAGGGATGGCAAGAGTATCACTATAAGTGGACGAGTTTTACCAGGAGCCAACAGGTTCCATGTGAATCTCCAGTGTGGTTCAAGTCCAGATGCTAATATTGCCCTGCACATTAACCCACGTTATGACTCCAGTTCAGGATACATAGTAACCAACACCAAGCAGAATAACTACTGGGGTACAGAGGAGCGCATATACCAGGCCCTCTTCCCCACAGGAACCCCTTTCAACCTGCAGATCCTGGTTACAAGCCACTCATACAAGCTCAGTGTCAATGGCATCCATATTATGGACTACAAGCACCGTATCCCATTCAGCATGGTGGACACTATCGTAGTGGATGGGATGGTGGAGGTTAATATCATCGGTTTCCAGGATGCTGTGGGTATTGTACCTGCTCAAGCTGGATTCCAGCCACAGTTTGCTTATCCTCCTGGATATGGTgtGCCTGCATTTCCTGCTCCAGCAAGCTATAGTGTGCCATACAAAACCATCATCATCGGTGGATTGCAGCCTGGCAAAAACATTTCCATCCAAGGTGTAGTTAATCCTCAGGCTTCCAGATTTGCCATTAACCTGCGTCACAGAAGTGGGATTGCATTTCATTACAATCCTCGCTTTGATGAGAACTTGGTTGTACGCAATACCCAAACAATAGAGCAGTGGGGCACAGAGGAGCGCTCTGGAGGCATGCCATTTCACAGGGGACAAAACTTCCAGATCATCATTTCCTGCAATCCCTATCATTACAACGTGTTTGTCAATGGGAAACAAGTGCATACTTATAACCACCGCTTCACCAGGCTGAATGAGATTGATGTTCTGGAGGTGTCTGGTGACATGAGCTTGATTGCTGTAAATGTTTAGCCAAATTTTTTACCAAAtcacagtttatagttacatttttttaataagccaGTCAGTAAAGCCTGTGAATTGCTATggaaaaagcaaataaatctgACAATGGTaaaatataatctttatattACAATTATATGAACATTatgaatgaaatgtaataatttaaatattactatgcttttttttattacacctTTTGTACCTGAATGATGAACTGTTAATTGTATTTACCTTTAACCTAAGCAATAAAACAGTGCCATCTGGTGCCATGTATCTGTA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function
GO:0016936 galactoside binding molecular_function

KEGG:

id description
K10093 LGALS9; galectin-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924602.2 True 1370 mRNA 0.42 10 13017057 13023215

Neighbor

gene id symbol gene type direction distance location
LOC113532897 LOC108278265 coding downstream 3938 13009439 ~ 13013119 (-)
msi2b msi2b,LOC108277875,LOC108425902,LOC108435815,LOC107682662,LOC108276910,LOC107587484 coding downstream 106203 12679407 ~ 12910854 (-)
tbx2b tbx2,tbx2b,LOC107664937,LOC107685069 coding downstream 589849 12419364 ~ 12427208 (-)
ccdc9 ccdc9 coding downstream 708795 12293635 ~ 12308262 (-)
kiaa0753 kiaa0753 coding downstream 730479 12267312 ~ 12286578 (-)
ksr1b LOC108277690,LOC108435810,LOC106603285 coding upstream 2663 13025878 ~ 13061751 (-)
cuedc1b cuedc1,LOC107587359,LOC107672109,LOC107746650,LOC107682807 coding upstream 58884 13082099 ~ 13106758 (-)
vezf1b vezf1b,LOC108278304,LOC108425912,LOC107756309,LOC107682824 coding upstream 89685 13112900 ~ 13125942 (-)
zgc:171927 zgc:171927,LOC108278279,LOC108425914,LOC107672095,LOC107588334,LOC107683438,LOC107592930,LOC107757416 coding upstream 110192 13133407 ~ 13138237 (-)
zgc:113149 LOC108278277 coding upstream 115140 13138355 ~ 13144301 (-)
G225291 NA non-coding downstream 309682 12706696 ~ 12707375 (-)
G224970 NA non-coding downstream 654964 12360206 ~ 12362093 (-)
G224746 NA non-coding downstream 935978 12080300 ~ 12081079 (-)
G224701 rtn4rl1,LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107592642,LOC107685061 non-coding downstream 1041039 11973919 ~ 11976018 (-)
G224700 rtn4rl1,rtn4rl1b,LOC107744797,LOC107664898 non-coding downstream 1043223 11973382 ~ 11973834 (-)
G225410 NA non-coding upstream 45571 13068786 ~ 13175992 (-)
G225619 NA non-coding upstream 335595 13358810 ~ 13359021 (-)
G225621 NA non-coding upstream 341188 13364403 ~ 13366491 (-)
G225652 slc6a4,LOC106612651,LOC102787906 non-coding upstream 446062 13469277 ~ 13470023 (-)
LOC117599099 NA non-coding upstream 635750 13658965 ~ 13728334 (-)
nf1a nf1 other downstream 9498 12940910 ~ 13007559 (-)
akap1b akap1b,akap1,LOC108278245 other downstream 18026 12920963 ~ 12999031 (-)
bcas3 bcas3,LOC107743646 other downstream 378332 12435206 ~ 12638725 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other downstream 609568 12388866 ~ 12407489 (-)
aipl1 aipl1,LOC106612843 other downstream 1796401 11188250 ~ 11220656 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other upstream 46921 13070136 ~ 13080860 (-)
G225622 NA other upstream 344548 13367763 ~ 13368850 (-)
or121-1 LOC108277640,LOC108413776 other upstream 917707 13940922 ~ 13942617 (-)
abcg1 abcg1,LOC108277612,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC107677096 other upstream 1001030 14024245 ~ 14043774 (-)
zmp:0000001236 maml2 other upstream 1464278 14487493 ~ 14536836 (-)

Expression


Co-expression Network