cadm1b (cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575)


Basic Information

Item Value
gene id cadm1b
gene name cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7745299 ~ 7907858 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924610.2
AAAAGCCAGTGACAGGGAAGATTTTGCAAGAAATTCTACAaacaatttgatttttttccctctcatttgACACATAAATGTACTTTATTGGTGTATGGTGTGTGGTGTAATGGTTTCCCtgttcctcatcctcctccttctccttcccCGCATCTCATTATCCTCCAGAGCGTCTCTAGGTGATTTAGCGCCGCCAGTCTGGAGCAGGTGTTCAACATGGCGAGCTTAGCGAgcggatctctctctctctcactcttcacCTGGCTCATTTTAACAGCTTTTCTGCGCCAAGGAGCTTCCCAGATAATAACAGCACAGGGTCAGAACCTGGTGACGGCAAACGTGTCAGTGATCGAGGGTGAGACGGCCACCATCAGCTGCCGGGTGAAAAACAACGACGACTCGGTCATCCAGCTCCTCAACCCTAACAGACAGACCATTTACTTCCGAGACGTCAGACCTCTTAAGGACAGCCGCTTTCAGCTGGTTAACTTCTCTGACAATGAGCTACGCGTGTCGCTGTCCAACGTGACACTCTTGGACGAGGGAAGATACGTGTGCCAGCTCTACACGGACCCCCCGCAGGAGGCCTACGCTGACATCACTGTCCTGGTTCCACCAGGCAACCTAATCATCGAGTCACGTGAGGATGTGGTGAGCGAAGGGAATGAGACTGAGATAACCTGCACGGCCATGGGCAGCAAGCCCGCCTCCAGCATCGTTTGGATGAAAGGAGATCAGATCCTACAAGGTGAGGAAACAGTGGAGGAGACGTATGACAGGATGTTCACCGTTACTAGCCGGCTCAGGCTCACCGTCTCCAAGGAGGACGATGGAGTGGCCGTCATCTGCATCATTGACCATCCAGCTGTGAAGGACTTCCAAGCCCAGAAATACCTGGAAGTGCAATataaaccAGAGGTAAAGATTGTTGTGGAGTTTCCAGAGGGCCTGACAAGGGAAGGAGAAAACCTCGAGCTGACCTGCAAGGCAAAAGGCAAACCTCAGCCTCATCAAATTAACTGGTTCAAAGTAGATGATGATGTTCCCTCCCACGCAGTGATTACAGGCTCTGATCTCCTCATCGAGAACCTCAACAAGTCCTACAACGGGACTTACCGCTGCGTGGCGTCCAACTTAGTCGGAGAAGCATATGATGACTACATCCTTTATGTCTATGATGTTCTCACCACAACCCCCCCACCCACTACTACCATCATCCACCCTGATGCTGCCCAAGATTCGAGAGCAGATGCAGCGGCACAGAAAATCGACCACGCTGTCATCGGCGGAGTCGTCGCTGTGGTCGTATTCGCCATGCTCTGTCTGCTGATTGTTTTGGGACGCTACTTTGCCAGACATAAAGGTACCTACTTTACCCATGAAGCCAAAGGAGCAGATGACGCAGCAGACGCCGACACAGCCATCATCAACGCCGAGGGAGGGCAAACCAACACGGATGACAAAAAGGAATATTATATCTAACTGACTCTGTTAGCGTCTCTCCCTGCTGGACGAGAAGAGTGAGAGTTCTGTCGGGTTTGG
>XM_026924611.2
AAAAGCCAGTGACAGGGAAGATTTTGCAAGAAATTCTACAaacaatttgatttttttccctctcatttgACACATAAATGTACTTTATTGGTGTATGGTGTGTGGTGTAATGGTTTCCCtgttcctcatcctcctccttctccttcccCGCATCTCATTATCCTCCAGAGCGTCTCTAGGTGATTTAGCGCCGCCAGTCTGGAGCAGGTGTTCAACATGGCGAGCTTAGCGAgcggatctctctctctctcactcttcacCTGGCTCATTTTAACAGCTTTTCTGCGCCAAGCACAGGGTCAGAACCTGGTGACGGCAAACGTGTCAGTGATCGAGGGTGAGACGGCCACCATCAGCTGCCGGGTGAAAAACAACGACGACTCGGTCATCCAGCTCCTCAACCCTAACAGACAGACCATTTACTTCCGAGACGTCAGACCTCTTAAGGACAGCCGCTTTCAGCTGGTTAACTTCTCTGACAATGAGCTACGCGTGTCGCTGTCCAACGTGACACTCTTGGACGAGGGAAGATACGTGTGCCAGCTCTACACGGACCCCCCGCAGGAGGCCTACGCTGACATCACTGTCCTGGTTCCACCAGGCAACCTAATCATCGAGTCACGTGAGGATGTGGTGAGCGAAGGGAATGAGACTGAGATAACCTGCACGGCCATGGGCAGCAAGCCCGCCTCCAGCATCGTTTGGATGAAAGGAGATCAGATCCTACAAGGTGAGGAAACAGTGGAGGAGACGTATGACAGGATGTTCACCGTTACTAGCCGGCTCAGGCTCACCGTCTCCAAGGAGGACGATGGAGTGGCCGTCATCTGCATCATTGACCATCCAGCTGTGAAGGACTTCCAAGCCCAGAAATACCTGGAAGTGCAATataaaccAGAGGTAAAGATTGTTGTGGAGTTTCCAGAGGGCCTGACAAGGGAAGGAGAAAACCTCGAGCTGACCTGCAAGGCAAAAGGCAAACCTCAGCCTCATCAAATTAACTGGTTCAAAGTAGATGATGATGTTCCCTCCCACGCAGTGATTACAGGCTCTGATCTCCTCATCGAGAACCTCAACAAGTCCTACAACGGGACTTACCGCTGCGTGGCGTCCAACTTAGTCGGAGAAGCATATGATGACTACATCCTTTATGTCTATGATGTTCTCACCACAACCCCCCCACCCACTACTACCATCATCCACCCTGATGCTGCCCAAGATTCGAGAGCAGATGCAGCGGCACAGAAAATCGACCACGCTGTCATCGGCGGAGTCGTCGCTGTGGTCGTATTCGCCATGCTCTGTCTGCTGATTGTTTTGGGACGCTACTTTGCCAGACATAAAGGTACCTACTTTACCCATGAAGCCAAAGGAGCAGATGACGCAGCAGACGCCGACACAGCCATCATCAACGCCGAGGGAGGGCAAACCAACACGGATGACAAAAAGGAATATTATATCTAACTGACTCTGTTAGCGTCTCTCCCTGCTGGACGAGAAGAGTGAGAGTTCTGTCGGGTTTGG
>XM_026924614.2
AAAAGCCAGTGACAGGGAAGATTTTGCAAGAAATTCTACAaacaatttgatttttttccctctcatttgACACATAAATGTACTTTATTGGTGTATGGTGTGTGGTGTAATGGTTTCCCtgttcctcatcctcctccttctccttcccCGCATCTCATTATCCTCCAGAGCGTCTCTAGGTGATTTAGCGCCGCCAGTCTGGAGCAGGTGTTCAACATGGCGAGCTTAGCGAgcggatctctctctctctcactcttcacCTGGCTCATTTTAACAGCTTTTCTGCGCCAAGGAGCTTCCCAGATAATAACAGCACAGGGTCAGAACCTGGTGACGGCAAACGTGTCAGTGATCGAGGGTGAGACGGCCACCATCAGCTGCCGGGTGAAAAACAACGACGACTCGGTCATCCAGCTCCTCAACCCTAACAGACAGACCATTTACTTCCGAGACGTCAGACCTCTTAAGGACAGCCGCTTTCAGCTGGTTAACTTCTCTGACAATGAGCTACGCGTGTCGCTGTCCAACGTGACACTCTTGGACGAGGGAAGATACGTGTGCCAGCTCTACACGGACCCCCCGCAGGAGGCCTACGCTGACATCACTGTCCTGGTTCCACCAGGCAACCTAATCATCGAGTCACGTGAGGATGTGGTGAGCGAAGGGAATGAGACTGAGATAACCTGCACGGCCATGGGCAGCAAGCCCGCCTCCAGCATCGTTTGGATGAAAGGAGATCAGATCCTACAAGGTGAGGAAACAGTGGAGGAGACGTATGACAGGATGTTCACCGTTACTAGCCGGCTCAGGCTCACCGTCTCCAAGGAGGACGATGGAGTGGCCGTCATCTGCATCATTGACCATCCAGCTGTGAAGGACTTCCAAGCCCAGAAATACCTGGAAGTGCAATataaaccAGAGGTAAAGATTGTTGTGGAGTTTCCAGAGGGCCTGACAAGGGAAGGAGAAAACCTCGAGCTGACCTGCAAGGCAAAAGGCAAACCTCAGCCTCATCAAATTAACTGGTTCAAAGTAGATGATGATGTTCCCTCCCACGCAGTGATTACAGGCTCTGATCTCCTCATCGAGAACCTCAACAAGTCCTACAACGGGACTTACCGCTGCGTGGCGTCCAACTTAGTCGGAGAAGCATATGATGACTACATCCTTTATGTCTATGATTCGAGAGCAGATGCAGCGGCACAGAAAATCGACCACGCTGTCATCGGCGGAGTCGTCGCTGTGGTCGTATTCGCCATGCTCTGTCTGCTGATTGTTTTGGGACGCTACTTTGCCAGACATAAAGGTACCTACTTTACCCATGAAGCCAAAGGAGCAGATGACGCAGCAGACGCCGACACAGCCATCATCAACGCCGAGGGAGGGCAAACCAACACGGATGACAAAAAGGAATATTATATCTAACTGACTCTGTTAGCGTCTCTCCCTGCTGGACGAGAAGAGTGAGAGTTCTGTCGGGTTTGG
>XM_026924615.2
AAAAGCCAGTGACAGGGAAGATTTTGCAAGAAATTCTACAaacaatttgatttttttccctctcatttgACACATAAATGTACTTTATTGGTGTATGGTGTGTGGTGTAATGGTTTCCCtgttcctcatcctcctccttctccttcccCGCATCTCATTATCCTCCAGAGCGTCTCTAGGTGATTTAGCGCCGCCAGTCTGGAGCAGGTGTTCAACATGGCGAGCTTAGCGAgcggatctctctctctctcactcttcacCTGGCTCATTTTAACAGCTTTTCTGCGCCAAGGAGCTTCCCAGATAATAACAGCACAGGGTCAGAACCTGGTGACGGCAAACGTGTCAGTGATCGAGGGTGAGACGGCCACCATCAGCTGCCGGGTGAAAAACAACGACGACTCGGTCATCCAGCTCCTCAACCCTAACAGACAGACCATTTACTTCCGAGACGTCAGACCTCTTAAGGACAGCCGCTTTCAGCTGGTTAACTTCTCTGACAATGAGCTACGCGTGTCGCTGTCCAACGTGACACTCTTGGACGAGGGAAGATACGTGTGCCAGCTCTACACGGACCCCCCGCAGGAGGCCTACGCTGACATCACTGTCCTGGTTCCACCAGGCAACCTAATCATCGAGTCACGTGAGGATGTGGTGAGCGAAGGGAATGAGACTGAGATAACCTGCACGGCCATGGGCAGCAAGCCCGCCTCCAGCATCGTTTGGATGAAAGGAGATCAGATCCTACAAGGTGAGGAAACAGTGGAGGAGACGTATGACAGGATGTTCACCGTTACTAGCCGGCTCAGGCTCACCGTCTCCAAGGAGGACGATGGAGTGGCCGTCATCTGCATCATTGACCATCCAGCTGTGAAGGACTTCCAAGCCCAGAAATACCTGGAAGTGCAATataaaccAGAGGTAAAGATTGTTGTGGAGTTTCCAGAGGGCCTGACAAGGGAAGGAGAAAACCTCGAGCTGACCTGCAAGGCAAAAGGCAAACCTCAGCCTCATCAAATTAACTGGTTCAAAGTAGATGATGATGTTCCCTCCCACGCAGTGATTACAGGCTCTGATCTCCTCATCGAGAACCTCAACAAGTCCTACAACGGGACTTACCGCTGCGTGGCGTCCAACTTAGTCGGAGAAGCATATGATGACTACATCCTTTATGTCTATGATGTTCTCACCACAACCCCCCCACCCACTACTACCATCATCCACCCTGATGCTGCCCAAGCGTGAAACCTGCGAGGAGGA

Function

symbol description
cadm1b Predicted to enable cholesterol 24-hydroxylase activity and heme binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cleithrum; immature eye; and nervous system. Human ortholog(s) of this gene implicated in breast carcinoma and prostate cancer. Orthologous to human CADM1 (cell adhesion molecule 1).

NR:

description
cell adhesion molecule 1-like isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06781 CADM1, IGSF4, NECL2, TSLC1; cell adhesion molecule 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924610.2 True 1545 mRNA 0.51 11 7745299 7907858
XM_026924611.2 False 1524 mRNA 0.51 10 7745299 7907858
XM_026924614.2 False 1485 mRNA 0.51 10 7745299 7907858
XM_026924615.2 False 1260 mRNA 0.51 10 7754031 7907858

Neighbor

gene id symbol gene type direction distance location
jam3a jam3 coding downstream 153481 7578055 ~ 7591818 (-)
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding downstream 169022 7571201 ~ 7576277 (-)
acad8 acad8,LOC107582571 coding downstream 181705 7549827 ~ 7563594 (-)
lim2.3 lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599 coding downstream 369234 7372414 ~ 7376065 (-)
LOC113532840 LOC108277937 coding downstream 380156 7355180 ~ 7365143 (-)
LOC113532837 LOC108277602 coding upstream 214556 8122414 ~ 8137209 (-)
dixdc1a dixdc1 coding upstream 295804 8203662 ~ 8212072 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding upstream 583930 8491788 ~ 8498469 (-)
il4i1 il4i1 coding upstream 594836 8502694 ~ 8512202 (-)
sik2b LOC108277697,LOC108436519,LOC107657230 coding upstream 655312 8563170 ~ 8613424 (-)
LOC113532601 NA non-coding downstream 168243 7576554 ~ 7577056 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding downstream 372979 7371370 ~ 7372320 (-)
G221844 NA non-coding downstream 524370 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 567003 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 621097 7122717 ~ 7124202 (-)
G222367 NA non-coding upstream 224505 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 254775 8162633 ~ 8162848 (-)
G222391 NA non-coding upstream 288947 8196805 ~ 8197207 (-)
G222522 NA non-coding upstream 333206 8241064 ~ 8242176 (-)
G222591 NA non-coding upstream 556718 8464576 ~ 8491284 (-)
zgc:77784 LOC108277423 other downstream 281800 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 1091881 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1720946 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1941326 5797928 ~ 5803973 (-)
G220990 NA other downstream 2034408 5710098 ~ 5710891 (-)
sorl1 sorl1,LOC107717255 other upstream 496971 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1033160 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 1769401 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 2400192 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 2800394 10708252 ~ 10721333 (-)

Expression


Co-expression Network