zgc:103681 (LOC108277991,LOC108443709,LOC103035104)


Basic Information

Item Value
gene id zgc:103681
gene name LOC108277991,LOC108443709,LOC103035104
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6386179 ~ 6394307 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924636.2
GTCCACACACATCTATTTCATTCACTGTAGCTGGTTTATCCAGAACTACTTTGGGGGGAAATCAGTCTTTAGAAATGATACTAAACTGACAGTTTatccaaaataataatacagattcGTACAACCCTGGTTGTTCTTCGCCCTCATCTCTGTGTCATTTGAAAAAGGCTCAGATGTCTTCTGAACTAACAACAGTCCTGCAAGAATGGAAGAGTCTGGAAAAGGATTTCCAACAACTCCAGgagACCCATCGGCTTTATATGCAGAAGCTGGATGAAGTCTCCAAGCTCCAGAACAGCTTTACTGCCTCTATAACTCGCCAGAGGAAGTGCTTAAAGGACATGTCTCAGTCTCTGAAGAAATGCAGTAAAGGATTAACAGAAGAGGAAACAAAATGTGTGGAAGAAATTAAGGGACACCTTCGGGAGAGGCCTGCCATTTTCCTTCAGATGGAGGCCTTCCTTCCTAAGAAAAATGGGCTATATCTCAGTCTTGTGCTTGGGAATGTGAATGTCAATCTCCTAAGCAAGCAGTCAAAGAGTGCCTACAAAGACGAATATGAGAAATTTAAGCTATGTGTGACTGTAATCCTGGTGCTGCTGGGGTTTGTCTGTCAGTTTTTAGTCACCTACAGATTTGTGGATGCACTGCTGAACTTCCTCTTGGTCTGGTACTACTGCACTTTAACAATCCGTGAGAGCATCCTCATCAGTAATGGATCCAGGATTAAGGGCTGGTGGGTGTTCCATCACTACATCTCAACCTTTCTATCTGGGGTCATGCTGACTTGGCCTGATGGTGAGCTGTACCAGATGTTCAGGAACCAGTTTCTTGCCTACTGCTTGTATCAAAGCTTTGTGCAATTCCTTCAGTACTACTATCAAAGTGGATGCCTTTATAGACTAAAGGCTTTAGGGGAAAGACACAACATGGATTTGACAGTGGAAGGATTTCAGTCATGGATGTGGAGAGGGCTGACATTTCTGCTGCCCTTTCTATTCTTTGGTCACTTCTGGCAGCTTTTCAATGGTATCTCCCTGTTCCGAATGTCTCAACTTCCTGACTGTAAAGAGTGGCAGGTCTCTGTGTGTGGGATTTGCttcttgattttatttacagGCAACTTCTTCACTACACTCGCAGTGGTGCGTCACAAGCTGAAAAACAAGAGCCATGGAAAAAGCAAGAGTCCATAAACTTGAAAGTTATTGATGTCCATAATTCAAAGTTAAAACTCAGTGGATTTTTTTGTCAAAAGATGTTTCACACTCCATTTTTGACATGAGAACATTTCAGAACCAGAATCACCTTTAGTGCCAAGTACCAtaggtttacatgtacaaggaatttgtaCATACTATATGTATGTACAATAGTACATACATATTATTTGTGAAAATTTATAATCTGGatacttcaaaataaaagct

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924636.2 True 1430 mRNA 0.41 12 6386179 6394307

Neighbor

gene id symbol gene type direction distance location
tyw1 LOC108278267,LOC108443711,LOC107716137 coding downstream 3340 6305358 ~ 6382839 (-)
caln1 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107659935,LOC108443712,LOC107672359,LOC103034584 coding downstream 87229 6233248 ~ 6298950 (-)
fam222bb LOC108277976 coding downstream 197809 6182048 ~ 6188370 (-)
txndc17 txndc17,LOC107661118,LOC107727907 coding downstream 224864 6158848 ~ 6161315 (-)
nxn nxn,typx coding downstream 229328 6094670 ~ 6156851 (-)
hip1 hip1,LOC107714882,LOC107659933,LOC107672373 coding upstream 52818 6447125 ~ 6488585 (-)
mos mos coding upstream 116929 6511236 ~ 6513733 (-)
mrpl28 mrpl28,LOC107659942,LOC107554268 coding upstream 133165 6527472 ~ 6532884 (-)
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding upstream 141741 6536048 ~ 6554451 (-)
itgae.2 NA coding upstream 164225 6558532 ~ 6579961 (-)
G221245 NA non-coding downstream 181249 6203064 ~ 6204930 (-)
G221214 NA non-coding downstream 293745 6091913 ~ 6092434 (-)
G221068 NA non-coding downstream 515552 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 590726 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 882237 5503040 ~ 5503942 (-)
G221461 NA non-coding upstream 22575 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 119521 6513828 ~ 6514965 (-)
G221618 NA non-coding upstream 293282 6687589 ~ 6688311 (-)
G221638 NA non-coding upstream 365103 6759410 ~ 6759618 (-)
G221633 NA non-coding upstream 366349 6760656 ~ 6761787 (-)
dynll2a dynll2a,LOC107554284 other downstream 361826 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 582206 5797928 ~ 5803973 (-)
G220990 NA other downstream 675288 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 786804 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1414660 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 224865 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 998108 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2010522 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2546711 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3282952 9677259 ~ 9713059 (-)

Expression


Co-expression Network