hnf1ba (hnf1b)


Basic Information

Item Value
gene id hnf1ba
gene name hnf1b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5989418 ~ 6003349 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924653.2
GCATCATGGCAAGTTATAGCGAGTGGGGAAGTTGCTGGGCTTTCATCAGGCAGGTGTCTTTCTCAGGGGGACTTTTTACGTGCTGGAGGTAGTGAGAAGAAGGAATTTTTTACAGCttactgtttatttctctctttaccTCCTCATCAaggtgggctttttttttttggatgttcgCAGACATGGTGTCCAAGCTGACATCTCTGCAGCAGGAGCTTTTAAGCGCCCTGTTAGACTCCGGAGTTACTAAAGATGTTTTGATCCAGGCGCTGGACGACATGGAGCCGAGCCCGGCCAGTTACGGAGTTAAACTGGAGAACCTGCACATGTCTCCGCCGCCGCCGCCTAAAACTAACGGCAGCGACGTGGAGGCCAAGCCGGTCTTTCATACGCTGACCAACGGGCACAGTAAAGGGAAGCTGTCGGGGGACGAGGGCTCGGAGGACGGAGATGATTACGACACGCCGCCTATCCTGAAGGAGCTGCAGTCTCTCAACACGGAGGAAGCGGCCGAGCAGCGCGCAGAGGTGGACCGCATGCTGGCTGAGGACCCGTGGCGTGCCGCGCGCATGATCAAGGCCTACATGCAGCAACACAACATTCCGCAGCGCGAGGTGGTCGACGTCACTGGCCTCAACCAATCACATCTCTCTCAGCACCTGAACAAGGGCACGCCCATGAAGACGCAGAAGCGCGCGGCTCTTTACACCTGGTACGTCAGGAAGCAGCGCGAGATTCTGCGACaattcaaCCAAGCAACACAAGGGTCTGGCAGTAGTATGGCAGACAAAAGCAGTCAGGATCAGGTGCTCCTTCTTTTCCCAGAGTTCAGTCAGCCTGCCGGCATTGGGCAGCCTGGAGATGATGCTGGCACTGAACCTGCCCTCAAGAAACTCAGACGCAACCGCTTCAAGTGGGGGCCTGCGTCCCAGCAGATCCTCTACCAGGCCTATGAACGGCAGAAGAACCCAAGCAAAGAAGAGCGGGAGGCTCTGGTAGAAGAATGCAATCGGGCAGAGTGTCTACAGAGAGGTGTATCACCATCTAAAGCCCAAGGGCTTGGTACCAATTTAGTCACAGAGGTGCGCGTTTACAACTGGTTCGCCAATCGGCGCAAAGAGGAAGCCTTCAGGCAGAAGCTGGCTATGGATGCCTATGGAGGGCAAAGCATCAAccctctcctcacacacagctcGCCACACCATTCTCAGGCCAGCACCTCTCCACCCAGCAAGATGCAAGCTGTCAGGTACAACCAGGCTCCCAGTGAAGTCAGCTCCTCTAGCACTATCAATCACCACAGCATGACGAGCAGCCAGTCTGTACTGCAGCAGGTCTCCCCCGGTGCACTGGACCCCAGCCACGGCCTGCTGTCACCTGACGCCAAGATGATCTCAGTATCAGGTGGAGGTCTTCCACCAGTTAGCACCTTGACCAACATCCACAACTCCCACCATGCTCACCAGCAAACACAGAACCTCATTATGCCCATTTCTGGAGTCATGGCCATTGCACAGGGTCTGAGCACATCGCAGGCACAGACTGTGCCAGTAATCAACAGTGTGGCAGGAAGCCTGGCCACCCTACAGCCCGTGCAGTTCTCACAGCAGCTGCATAGCTCTCACCAGCAGAGTCTCATGCAACAGTCCCATAGCCACATGAGCCAACAGCCCTTCATGGCCACCGTTACACACTCACATATGTATCCACACAAGCAGGAGCCACCACAGTATTCCCACCCATCACGCTTTCCGTCCGCCATGGTAGTGACAGACAACAACAGCCTCAGCACCCTCAGCTCAATGTCCTCCACCAAACAGGATGCTCCTGTAAACAAGATGGTGCAACTGGGGGGTCTCAACTGGTGTCCTCTGCAAGCCTGGTGAGCATATCCACCTGACTTCCTCAATGCCTAGCAACAGGAGCACATTTCTCCGGCTCTCTCCCTGCTGTATCTGTGGCAACTCCTAATCACTGGCAACAGTGCACTGGAAGATGAGCTGGTCACTAATGTAGGGActgaaaaaaagaggagagCAATCAGAAAGGAGACTCTGCCTTAGTCTAACTGTACCATGGAAAGATGGGAGGATCACCTGGAAACTACTACAGTTGAACAATTTCCAAGCTAGCCTTTTGTAACAGTGTTTTGCTTCCAACCACTAAAAAGAGGATGATTCTGACATCTTTTAGGAACAAATGGAAATGGTGTGCAGTGGGGGTGTTAAACTGGCACGATTTTGTACACTCACAGGGTTACCAAATGCAAAAGGATGACCAATGCTCCATTTCTGGCCAAGCTGACTCTTTAATGGACTCTTAGGAGGCTTCTCCTCATCCTGTCCCTGGACTGTCAATCTAAAACCTCTCTCTATCATCATTGAGCTCACCTAGACATAGATGTTGTGTAATGAGTTTTTGAATGAAATGACAATcagcttattttattttcaacataTTTGTCAGATCTTTTTGGGTAGAAGATTATGGACTGAATGTGTTGGATTTTCCTGCATATACATTGCAGTGGGTCTTCCATTTGAGTGGTTAATATGAGTAGTCACTGTTCTGTACAGTTGTAAATATGAATGATAATTATGCTATGTCTTGAAAGATGTACATATTTCAGGTCCATAACTTTTCTTCAACAAACTGTGATTTAGAAATGACAATCTTTAGAACAGAAAGGACTATGCAATGTACTGAATGGCACAAAAAAATGTGGGATTTGCCCATTTTCTGCAGGTTTAAAAATAGTTACACCAGCAAAACAGCAAGACAATAGCTTGTCAAAGCCAAGCTGCAGATATTGCAcactttttccttctttccattTTGGCATCTGAGAATGATACCATGAAAATGAAACCATAACATAATACCATTATTCTGTTAGTATAAATATTAGTGATGGTATCACAGACAGGCTATTAAGAGCCTCTTGCTGTATTAGTAATTGGTAATTGAGAGGCTGATAACCGTGAGTAAAGGTGGTTGTCTGTCATCAGGCCATGTTCACCAGGACAAACAGTATTACCCACTTATGCAACTCTGAGGTACACAAAACATGAAGTAATAACCCATAAAGTTAAACACTAGACACCACATGCATTAAATTACTTTTTGGACTGCTAGATTTGGAAAAGAGAAGAATGTAATTTTGTTAGTTTGCTTTGTTCTTTTAACTCTCACCTGTTGTTCTTGCTTTCCAAAAGGTCATTTATTAATGCTTTTATTGAGCATATGCCACTTGGTTACAATGCCATTCTCAACACATACCATTAGATTTTCTCAgtcttgtattatttttgtataaaatgaaaatcaatcttttaaaatcattatttatactgtgaggaaaaaaatgatgatgtcTCAAGTAAAGGCTCTTTCCAAGA

Function

symbol description
hnf1b Enables DNA binding activity; DNA-binding transcription factor activity; and protein homodimerization activity. Involved in animal organ development and positive regulation of transcription initiation from RNA polymerase II promoter. Located in nucleoplasm. Implicated in kidney disease; maturity-onset diabetes of the young type 5; pancreas disease; renal cell carcinoma; and type 2 diabetes mellitus.

NR:

description
PREDICTED: hepatocyte nuclear factor 1-beta

GO: NA

KEGG:

id description
K08034 TCF2, HNF1B; transcription factor 2, hepatocyte nuclear factor 1-beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924653.2 True 3398 mRNA 0.47 11 5989418 6003349

Neighbor

gene id symbol gene type direction distance location
synrg synrg coding downstream 13699 5939052 ~ 5975719 (-)
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding downstream 192443 5787013 ~ 5796975 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding downstream 216898 5768627 ~ 5772520 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding downstream 245997 5732735 ~ 5743421 (-)
LOC113532847 LOC108277604 coding downstream 366947 5621506 ~ 5622471 (-)
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding upstream 22114 6025463 ~ 6028603 (-)
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding upstream 25897 6029246 ~ 6033511 (-)
rskra LOC108277445 coding upstream 31724 6035073 ~ 6047606 (-)
LOC113532842 kiaa0100,LOC107661106,LOC107727920 coding upstream 46104 6049453 ~ 6080648 (-)
glod4 glod4,LOC102784280 coding upstream 80391 6083740 ~ 6087090 (-)
G221068 NA non-coding downstream 118791 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 193965 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 485476 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 500410 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 534495 5454596 ~ 5454923 (-)
G221214 NA non-coding upstream 88564 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 199715 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 322742 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 413533 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 510479 6513828 ~ 6514965 (-)
LOC113532612 LOC108277970 other downstream 185445 5797928 ~ 5803973 (-)
G220990 NA other downstream 278527 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 390043 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1017899 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 2172583 3740282 ~ 3816835 (-)
dynll2a dynll2a,LOC107554284 other upstream 17796 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 615823 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1389066 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2401480 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2937669 8941018 ~ 8946899 (-)

Expression


Co-expression Network