atf5b (LOC108278369,LOC108435284,LOC103039462)


Basic Information

Item Value
gene id atf5b
gene name LOC108278369,LOC108435284,LOC103039462
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6931522 ~ 6936069 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924665.2
TTGTGCTTCTCCGGTGCCCAAAAGTTTTAGAAACGTTTTTTTTGCTCCCTAGATCATCTTGAACATCAAATGGTTTGAAGAAGACAGGATAAGAAGATGCTGTGTTAATGTGAAGCCGCTCTTTTCCTGTGCCTGGTGGAGTTTACCTGGTGGACAGCACACACTTCAGCCCACATCAACATGGAGTATCACTTTTTCTTGCCATTGCGCTGTGTGAAGCCCTCCTTGAATTCTGACACATTTGAGTACACAATTGAGTGCGTCAAGCAAATCAGAGAACATTGTGGCATCATAGATCCTTTTCTGCAAAATTCTCCTCATTTGCAAAGCCGACCTCCGAATTCTCTCTTTCCCACTGGCTAATGACAGCCAATCCCAGACAAGAGGGGAGGAGTCTACACAGACGTATGGACGTACATtgATTGGATGACAGAACATTTTGACACCTACCCACTTTCAGCATCAACTGAATCGTCTCCTGGCTCATCGATTCCACCTTCCCCCTTGGAACATGATGTCCAGGTGCCCTCTGATTTGGAGGTCATGACCTCTCTCCTAAAAGAAGAACTTGCCCAACTCGAGGATTATTACCTATTTGAATCAGCGCCCATGAAAGCAGAGAAATGGCAGAAATGTGATAAAGGCTACCAAGCAATGTCCGCCCCATCATATTACCAGTTACCCTGCACTTCATACAACGTGAACCAGTCCGAATCGAACCCCAGGCTCGTTAGCCTGGCAACAGGTGAGCTTGACCTGAGAGGGTTTTGCGGCAGCTCTGTGGGAAGATCTAAAAcatccagacctgctccttacAGCTATGTTCGGACCCACTCCACTAGCCAAAGGATAGCATCGAATGGTTGCAAAGACGTGGAAGTTTTTGAGAAAGAGACATGGACTTTCAAAGGGACTCATTCAGGTTATGCAGAGATGGCTTTAGACCAGTGTTCTGTTGACAAGATTTTTGGGAAGAACCATATTGGTACGAAAAAGGTTAGAGAATGTGCCATATTGctaaaggaagaagaaaagagaagttTCACTGAAGATGTTTTTTACAGAGCAGAGATGGTGAAAAGTTTTGATGCTGGTGCACCACTGGATGCCCACCACAGGAGAGAAGGTCAAGCTCCTGGAATGAAGATGCTCGGTCATGGTCATGAAGCTGTTGCGATGCCAGTACTGCACTGCAGTGAAAACGGAAGTAGTCCTGCATTTAAACACCCAGAATTAGCTGAGTGTTACTTTAGTCAGATTACTGCCAATTTAGAACCATATCATGGCTTTATGAATGAGGTAGATCCGTCAGTCCGGTCTGGGGCTGTCGAGTCTATGAATAGTGGTTACTCAAGCCATGAATGCCTTGTAGATCAAAGCTTTGATTGTCTGTCCGGAGACAGTGTTGGATCCTCTTTGGAGTTCCCAGCACAGAAACCAATGCAAAGGCTAAGAGaaaacctgtgtgtgttcaAGCCGGAGGTCAAAGTAAGTTGCCTGGAAAGGAGTCATGGAGAGCGCAAGCAGAAGAAAAGAGACCAGAACAAGACAGCTGCTTACAGGTATCGACAGCGGAAGAGGGCGGAGCAGGACTGCTTGGAGGAAGAGCTTCATGGATTGGAAGGGAGAAACAGGGAGCTGCGAGACAAAGCCGAATctgtagagagagagatccagTATGTCAAAGACCTCCTGATTGAAGTGTATAAGGCTCGGAGTCAGCGCCTCAAAGAGGATTCCAGTGCCTAAACCTGTTCTAAGCACCAGCATTGAAAGATCAGGACTTTTTCGGCAAGGACTTTTTTAACAAGCTCTGGTAGTATGTTTTTGACGTTCAAAGTAAATGATAAGACTGAGAAAAGAGCTCTTTGCTGGGTTTGCTAAATAGAATTTAGCAAATTATGTAATGAACACTGTGATACTAGCCTTAGGCTGACCAGTATTCTTAGTATTCTAATGAGAGCTAAAGATATTATGCATTTTCATGATTCGGTTtgacttttttgcttttttttattattattattattattattattattacaatccTCTGTgcttattaaatcatttataccaaaaaaagagaaaccaaCAGCTATACTACATATGCTAGCtcagatgtgtgtttgttgtgtgggGCATGATGGTACAGCTTAGTGAGGACTTGTAAGAATGTTATTGCAAATAATTACTGCTATTTTTTTGCGCTGTAACTATAAAGCCCAGTAATGTTAAGTGTacttcattttagtttttactGACATCaccatttttgtattttcatattttattttgcgtgtacatgttttttttttaacgatgCAGGATAGTTTTAAGAGTTTTTTTcaatcacatttaaaacagtGTACATTACCAGCCAATGTACTGTGGTTTGAAGCACACTAGTAAGCTTTTAGATTTCTTGGTAACTTCACTGGCTCAGGTACTGAATGCATGTCAGAAATATTGAAAAGCATGTTAGGTGACAATTTACTGCATGACTCTTTATATGACTGCATTGTACATTATGACAGCAAGTAGACTTTGTTTCTTCCATCAGACCTTTTATTGCCGTTTTCTTGATTACAGGCTGCCAAATTATTTGCTCAATTTGTAAGGCATGGAGTTGCATTAATCAGTATGAGAGGCCGTTTGCTTTCTTGTGCAGGTTTGCGGCAAACAATCACTGTCATTTACTAAAGAGCTTAAAAGACTGTAGGCctaatgtaatttatatttttaatatatatccAGGTGCATATTAGGTCTGCTATGAATAGTTCACTGATCACAATGCTGATATTGGAAGAAAGTACTGCAGGAAATCCTCTGTGTGATAACTGATATGAGCATCAGAATCAAACAGCACAAGTGTGAACCAAATTCTGGCATTTCTGTATACCGgtattaaaaatgattgtttaatGTTGA
>XM_026924666.2
CTGCCTACGACTTGCTTCACTCGTACATACAGATCAACGTAAAACTTTGTTGTGATCATGTTTTGGCTCTGTCCTAAAACCCAAAAGGAGTTTGCCTGTAGAGCAGTCTACAGAGTTCAGTGTCCATGTAGGTATCACTTTTTCTTGCCATTGCGCTGTGTGAAGCCCTCCTTGAATTCTGACACATTTGAGTACACAATTGAGTGCGTCAAGCAAATCAGAGAACATTGTGGCATCATAGATCCTTTTCTGCAAAATTCTCCTCATTTGCAAAGCCGACCTCCGAATTCTCTCTTTCCCACTGGCTAATGACAGCCAATCCCAGACAAGAGGGGAGGAGTCTACACAGACGTATGGACGTACATtgATTGGATGACAGAACATTTTGACACCTACCCACTTTCAGCATCAACTGAATCGTCTCCTGGCTCATCGATTCCACCTTCCCCCTTGGAACATGATGTCCAGGTGCCCTCTGATTTGGAGGTCATGACCTCTCTCCTAAAAGAAGAACTTGCCCAACTCGAGGATTATTACCTATTTGAATCAGCGCCCATGAAAGCAGAGAAATGGCAGAAATGTGATAAAGGCTACCAAGCAATGTCCGCCCCATCATATTACCAGTTACCCTGCACTTCATACAACGTGAACCAGTCCGAATCGAACCCCAGGCTCGTTAGCCTGGCAACAGGTGAGCTTGACCTGAGAGGGTTTTGCGGCAGCTCTGTGGGAAGATCTAAAAcatccagacctgctccttacAGCTATGTTCGGACCCACTCCACTAGCCAAAGGATAGCATCGAATGGTTGCAAAGACGTGGAAGTTTTTGAGAAAGAGACATGGACTTTCAAAGGGACTCATTCAGGTTATGCAGAGATGGCTTTAGACCAGTGTTCTGTTGACAAGATTTTTGGGAAGAACCATATTGGTACGAAAAAGGTTAGAGAATGTGCCATATTGctaaaggaagaagaaaagagaagttTCACTGAAGATGTTTTTTACAGAGCAGAGATGGTGAAAAGTTTTGATGCTGGTGCACCACTGGATGCCCACCACAGGAGAGAAGGTCAAGCTCCTGGAATGAAGATGCTCGGTCATGGTCATGAAGCTGTTGCGATGCCAGTACTGCACTGCAGTGAAAACGGAAGTAGTCCTGCATTTAAACACCCAGAATTAGCTGAGTGTTACTTTAGTCAGATTACTGCCAATTTAGAACCATATCATGGCTTTATGAATGAGGTAGATCCGTCAGTCCGGTCTGGGGCTGTCGAGTCTATGAATAGTGGTTACTCAAGCCATGAATGCCTTGTAGATCAAAGCTTTGATTGTCTGTCCGGAGACAGTGTTGGATCCTCTTTGGAGTTCCCAGCACAGAAACCAATGCAAAGGCTAAGAGaaaacctgtgtgtgttcaAGCCGGAGGTCAAAGTAAGTTGCCTGGAAAGGAGTCATGGAGAGCGCAAGCAGAAGAAAAGAGACCAGAACAAGACAGCTGCTTACAGGTATCGACAGCGGAAGAGGGCGGAGCAGGACTGCTTGGAGGAAGAGCTTCATGGATTGGAAGGGAGAAACAGGGAGCTGCGAGACAAAGCCGAATctgtagagagagagatccagTATGTCAAAGACCTCCTGATTGAAGTGTATAAGGCTCGGAGTCAGCGCCTCAAAGAGGATTCCAGTGCCTAAACCTGTTCTAAGCACCAGCATTGAAAGATCAGGACTTTTTCGGCAAGGACTTTTTTAACAAGCTCTGGTAGTATGTTTTTGACGTTCAAAGTAAATGATAAGACTGAGAAAAGAGCTCTTTGCTGGGTTTGCTAAATAGAATTTAGCAAATTATGTAATGAACACTGTGATACTAGCCTTAGGCTGACCAGTATTCTTAGTATTCTAATGAGAGCTAAAGATATTATGCATTTTCATGATTCGGTTtgacttttttgcttttttttattattattattattattattattattacaatccTCTGTgcttattaaatcatttataccaaaaaaagagaaaccaaCAGCTATACTACATATGCTAGCtcagatgtgtgtttgttgtgtgggGCATGATGGTACAGCTTAGTGAGGACTTGTAAGAATGTTATTGCAAATAATTACTGCTATTTTTTTGCGCTGTAACTATAAAGCCCAGTAATGTTAAGTGTacttcattttagtttttactGACATCaccatttttgtattttcatattttattttgcgtgtacatgttttttttttaacgatgCAGGATAGTTTTAAGAGTTTTTTTcaatcacatttaaaacagtGTACATTACCAGCCAATGTACTGTGGTTTGAAGCACACTAGTAAGCTTTTAGATTTCTTGGTAACTTCACTGGCTCAGGTACTGAATGCATGTCAGAAATATTGAAAAGCATGTTAGGTGACAATTTACTGCATGACTCTTTATATGACTGCATTGTACATTATGACAGCAAGTAGACTTTGTTTCTTCCATCAGACCTTTTATTGCCGTTTTCTTGATTACAGGCTGCCAAATTATTTGCTCAATTTGTAAGGCATGGAGTTGCATTAATCAGTATGAGAGGCCGTTTGCTTTCTTGTGCAGGTTTGCGGCAAACAATCACTGTCATTTACTAAAGAGCTTAAAAGACTGTAGGCctaatgtaatttatatttttaatatatatccAGGTGCATATTAGGTCTGCTATGAATAGTTCACTGATCACAATGCTGATATTGGAAGAAAGTACTGCAGGAAATCCTCTGTGTGATAACTGATATGAGCATCAGAATCAAACAGCACAAGTGTGAACCAAATTCTGGCATTTCTGTATACCGgtattaaaaatgattgtttaatGTTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC103356433

GO: NA

KEGG:

id description
K09044 ATF5; activating transcription factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924665.2 True 2931 mRNA 0.41 4 6931522 6936069
XM_026924666.2 False 2877 mRNA 0.41 4 6931522 6935788

Neighbor

gene id symbol gene type direction distance location
LOC113532633 pou2af1 coding downstream 42531 6883128 ~ 6888991 (-)
LOC113532877 LOC108277444 coding downstream 90551 6831234 ~ 6840971 (-)
tubd1 tubd1,LOC107581164 coding downstream 175256 6748916 ~ 6756266 (-)
LOC113532622 NA coding downstream 326458 6583963 ~ 6605064 (-)
itgae.2 NA coding downstream 351561 6558532 ~ 6579961 (-)
phldb1b phldb1,LOC108277892 coding upstream 23054 6959123 ~ 7039860 (-)
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding upstream 227888 7163957 ~ 7172748 (-)
map6b LOC108277516 coding upstream 238283 7174352 ~ 7186264 (-)
thap12b thap12,LOC108278397 coding upstream 251731 7187800 ~ 7195208 (-)
trnap-cgg_8 NA coding upstream 259454 7195523 ~ 7195594 (-)
G221683 colca2 non-coding downstream 58163 6872831 ~ 6873359 (-)
G221682 colca2 non-coding downstream 59543 6871737 ~ 6871979 (-)
G221681 NA non-coding downstream 61248 6867784 ~ 6870274 (-)
G221659 NA non-coding downstream 125155 6806155 ~ 6806367 (-)
G221633 NA non-coding downstream 169735 6760656 ~ 6761787 (-)
G221812 NA non-coding upstream 186648 7122717 ~ 7124202 (-)
G221814 NA non-coding upstream 197448 7133517 ~ 7178296 (-)
G221844 NA non-coding upstream 282597 7218666 ~ 7220929 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 435301 7371370 ~ 7372320 (-)
LOC113532601 NA non-coding upstream 640485 7576554 ~ 7577056 (-)
LOC113532805 NA other downstream 278104 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 907169 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1127549 5797928 ~ 5803973 (-)
G220990 NA other downstream 1220631 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1332147 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 456346 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1468760 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2004949 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2741190 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3371981 10308050 ~ 10312516 (-)

Expression


Co-expression Network