zgc:162608 (LOC108277432)


Basic Information

Item Value
gene id zgc:162608
gene name LOC108277432
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8645643 ~ 8647238 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924683.2
GTGTACCCTACAGACCCTTATAAGAACCGGACACATCACATTCACGATATCCTGACTTGAGCTGTGACATTTAGAAGGTTCTGATCATCAATAATTCACTTTGTCTCTCCTATATTTCAGAGTGGACACaaaagtttaaagaaaaaaaaaatgcttctatATGTGATCATTGCTGTGACACTGGGGACCACAACAGCATTTCCTGTCAGTCAAGATCCTGCCAGTCAAGAAGGATTTTGGAGAATCCAGGATGAAAGTACAAATCTGGCCATTGAAAAACAAGATGCCACCAAGCAATATGATGGAATGTGGAAGAGTCACGTGGTGAGCAGTGACCTTTACTCCCCAGACTCCCTGAACCCCATGGCAGCTGAGCTCAGGCACAAACTGAGCCAGGAGTCAGACCGTCTACGAGCTCGCTTGAGACAGGAACTTCTGGATCTCCGTCAGAGGCTCTCTCCTTACCCCAGCCACCCCCAGGTCACCCCGACTAATGTCCACGAGCTCCTGTCTCCCTTTACCAAGAGCCTCCAGACGGCTCTCGAATCCAACACCCATCAACTCTGCGGTCATCTTATGATGACCATCCAAGGGGTTCAAGCTGATGGACCTTCGCTCTACCAAGAGGCAATAGAGAAGATCAGTCAAGCTATGGACGAGAGTCATAAGAGAAGAACCGCTGCCTTTGAGGActttaaaacaaaagcatttcagGCAGTTGAGGAGGACAAAGACAGCAGTAGGAAGGATCTTTGGGAGGAGGTGACAGCTAGGTTGGGCCAAGAGATCTGCTCATTCAGTTTGGAGATACAGGGCAAGATTGCAGCACTGAAAGTCTCATTAACGACACTCCTCACTTCATCAGAACCCTTAGGAGCTGAAATGGTTTCCAAAGTGGACCAGTTCTGTGATGGTTCCTCAAGGCAGAATCATAAATTTATTGCTGATTTAGAGCAGCAAATATCCATGCTTGAGGAAAAGCAGAGTAAAGGCGAGCCATCAAGTCATGTAAACATAGAGTCCATACAGGAGGATTTCTCCACCAGACTAAATGCATTACTCCAGGACATTGTACACACTATCAACTAGAGAGacacctctccctctctgttcATGTTAGAATTACCTCTTTAATGTAAATAGAAGTGAGACTGTACAGTGTGAATTATTGTCTTTTTGTAGAAAACTGTCTCTTAAAATGTCTAGTAAAGACAACTTTTtatacagaaaattaaaatgtagtgTCTTTTTGTCTAGTTTTGTCTAGTTGAGTGCAAGAAAACACCAGTGGACCATTTTTTTTAGATGCACATTTATTATGCTTTGTGTAATCAATATCTAAAGTcttctatttttaaaagaaatgcatttaaattgaaaaattaaAGTATATATCGTCCA

Function

NR:

description
uncharacterized protein LOC110507365

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924683.2 True 1401 mRNA 0.42 3 8645643 8647238

Neighbor

gene id symbol gene type direction distance location
laynb LOC108277700 coding downstream 15489 8615437 ~ 8630154 (-)
sik2b LOC108277697,LOC108436519,LOC107657230 coding downstream 32219 8563170 ~ 8613424 (-)
il4i1 il4i1 coding downstream 133441 8502694 ~ 8512202 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding downstream 147174 8491788 ~ 8498469 (-)
dixdc1a dixdc1 coding downstream 433571 8203662 ~ 8212072 (-)
drd2a drd2,LOC107586233,LOC107670954,LOC107717269,LOC107709110 coding upstream 82704 8729942 ~ 8772841 (-)
scn3b scn3b coding upstream 127908 8775146 ~ 8796028 (-)
LOC113532830 LOC108277452,LOC107578747 coding upstream 152229 8799467 ~ 8814548 (-)
mcamb mcam coding upstream 885812 9533050 ~ 9567354 (-)
c1qtnf5 c1qtnf5,LOC107690457,LOC107601727 coding upstream 938406 9585644 ~ 9589292 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 97269 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 154359 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 403467 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 448436 8196805 ~ 8197207 (-)
G222377 NA non-coding downstream 482795 8162633 ~ 8162848 (-)
G222852 NA non-coding upstream 390242 9037480 ~ 9043751 (-)
LOC117599042 NA non-coding upstream 1110920 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 1155254 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 1239778 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 1284118 9931356 ~ 9978560 (-)
sorl1 sorl1,LOC107717255 other downstream 166731 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 1182144 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 1992225 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 2621290 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 2841670 5797928 ~ 5803973 (-)
G222809 oaf other upstream 293780 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 1030021 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 1660812 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 2061014 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 2541012 11188250 ~ 11220656 (-)

Expression


Co-expression Network