vps26b (vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589)


Basic Information

Item Value
gene id vps26b
gene name vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7571201 ~ 7576277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924702.2
gagaaagacgcacacatacacagagagagagagagagatacacacacagatagagagagaaagacgcacacatacacagagagagagagagagagagatgagcttTTTTGGCTTTGGCCAAAGTGCAGACATCGACATAGTGCTAAATGACGCTCAGACGAGGAAAAAAGTTGAGCACAAGACTGAAGATGGCAAAAAGGAGAAATATTTCCTTTTCTATGACGGTGAGACAGTGAGcggtaaaataaacatcacactgAAAAACCCGGGCAAGAGACTCGAGCATTACGGCATCAAGATCGAGTTCCTCGGCCAGATTGagctgtACTATGACAGAGGGAACCACCATGAGTTTGTCTCGCTGGTCAAGGATCTGGCCGGACCTGGAGAACTTTATAACTCCCAGTCTTTTGACTTCGAGTTTTCTCATGTGGAGAAGCCATATGAGTCATACACAGGCCAGAACGTGAGACTAAgGTACTTCCTTCGTGCGACGATGAGCCGTAGACTGAATGACATCATTAAGGAAATGGATATCGTAGTGCACGCGCTTTGCACATATCCAGAGTTAAACTCCTCTATCAAGATGGAGGTTGGCATTGAAGACTGTCTGCATATTGAGTTTGAGTATAACAAGTCTAAATATCACTTGAAAGATGTGATTGTGGGGAAGATCTACTTCCTTCTTGTGAggataaaaataaagcacatgGAGATCGATATAATAAAGCGAGAGACAACGGGCACAGGACCCAGCgtgtttcatgaaaatgagACCATCGCCAAATATGAGATTATGGATGGAGCACCAGTGAGAGGCGAATCGATCCCCATCCGATTATTTCTCGCTGGCTATGAGCTGATGCCCACCATGAGAGATATCAATAAGAAGTTCTCTGTGCGATATTATCTGAACCTAGTCCTGATAGATGAGGAGGAAAGACGCTACTTCAAACAGCAGGAAATCACACTGTGGAGGAAAGGAGACATCGTAAAGAGGAGTATGTCCCAACAGGCCACCATAGCTTCTCAGAGATTTGAGGGATCAAAAGCTGGAACTGCTTCAGTACAAGAGAAAATGGACAGcagttaaatgaaaaaaaaatcctgtatgCTCCTGTGGGATCAGCAGCACAGGGGTTTGGGATAGATGGGAAAGAAAATCATTCACAAACATCATCCAGGTGCtcaatttttaaacatgtacatGTTGATTGTTTCTGGAGGTTTCTCTTCCAATCCTGTTGATTATGAATAAGAAAGTGCACAGCTACAGTAGCTTCCTATTTAATATATCTAAATTGCTGCTTTTTTAActatatatgcatatacacaAACCACTTTTCATATTAGTCCATTCAGAAACATTCCTTTATCTTTATTTGATGATCCTTGATTTATGATGAAATGAAtactaattattttaatgttgtgtttgtgttccgGTAAATGAGCCTCAAGTAAACACTGGGAGATTTGTGTTTTGCATTGGTTGCAGAGGATGGTTTATTTGCAGTTATTTTATTCGTAAGAGATTTATACACAGTATTATTCTGTAGTATTGGAATTAGGAAAGAGGCAATACAGAAATGCTGCAGACATTTATGCTACGTTCAACTAAAACTCTTTAATCGGACCtccgactaggaaaaaaaaaa

Function

symbol description
vps26b Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm and membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26B (VPS26, retromer complex component B).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 26B

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0015031 protein transport biological_process
GO:0030904 retromer complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18466 VPS26; vacuolar protein sorting-associated protein 26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924702.2 True 1658 mRNA 0.41 7 7571201 7576277

Neighbor

gene id symbol gene type direction distance location
acad8 acad8,LOC107582571 coding downstream 7607 7549827 ~ 7563594 (-)
lim2.3 lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599 coding downstream 195136 7372414 ~ 7376065 (-)
LOC113532840 LOC108277937 coding downstream 206058 7355180 ~ 7365143 (-)
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding downstream 287228 7276448 ~ 7283973 (-)
alcamb LOC108278292 coding downstream 317595 7229918 ~ 7253606 (-)
jam3a jam3 coding upstream 1778 7578055 ~ 7591818 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding upstream 169022 7745299 ~ 7907858 (-)
LOC113532837 LOC108277602 coding upstream 546137 8122414 ~ 8137209 (-)
dixdc1a dixdc1 coding upstream 627385 8203662 ~ 8212072 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding upstream 915511 8491788 ~ 8498469 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding downstream 198881 7371370 ~ 7372320 (-)
G221844 NA non-coding downstream 350272 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 392905 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 446999 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 697842 6872831 ~ 6873359 (-)
LOC113532601 NA non-coding upstream 277 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 556086 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 586356 8162633 ~ 8162848 (-)
G222391 NA non-coding upstream 620528 8196805 ~ 8197207 (-)
G222522 NA non-coding upstream 664787 8241064 ~ 8242176 (-)
zgc:77784 LOC108277423 other downstream 107702 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 917783 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1546848 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1767228 5797928 ~ 5803973 (-)
G220990 NA other downstream 1860310 5710098 ~ 5710891 (-)
sorl1 sorl1,LOC107717255 other upstream 828552 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1364741 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2100982 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 2731773 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 3131975 10708252 ~ 10721333 (-)

Expression


Co-expression Network