LOC113532980 (LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794)


Basic Information

Item Value
gene id LOC113532980
gene name LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7276448 ~ 7283973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924739.2
AGGCCAGAGCACATGGGCCTCTGCTAAACTCACCTGCTTCAGGGGATATCAGTGCTGAAATGGAGCTAATAtgccttttcctttttttaatacatggaATGCCTTTGGCTTTTACTCAGTTTAATGGCTACAACTGTGATCCTGCCTTACACAGTAGATTCCCAGCCGAGCGGGATATCACTGTGTACTGTGGTGTGCAGACCATCACACTGAAGATCAACTTCTGTCCAGTGCTCTACTCAGGCTACACTGATACTGACCTGGCCCTGAATGGGCATCACGGTGATGCTCAATGCCGTGGCTTCATCAACAACAACACGTTCCCCACTGCAGTGCTGTTCAGCATCAGCCTCAGCACACTGGAGGCCTGTGGAAACATGCTGGTGGTTTCTGCAGCTCAGGGCTACAACGCTTTTGGGAATATATCCCTGGTACAGATAGGGAATGTATCAGGCTACATCGATACTCCTGACCCTCCAACCATCATTAGCTACCTGCCTGGTTTGCTTTATAAATTCAGCTGCAGTTATCCTCTGGAGTATCTGGTTAACAACTCTCAGCTGGCATCTTCATCAGCAGCAATAGCAGTAAAAGACAACAATGGCACCTTTGTGAGCACCTTGAGCTTGATTCTATACAATGATTCATCCTTCAGTCAGCAGTTGTCTGTTCCCATGGCTGGTCTGGCTCTGAAGACTAGAGTGTTTGCTGGTGTCAAGGCCACTAATCTAGATAGGAgGTGGAATATACTGATGGATTACTGTTACACCACCCCCTCTGGGAATCCTAATGATGAGATACGCTACGATCTTTTCTTCGGATGTCACAAAGACCCACAGACCACAGTTTTTGAGAATGGGAAAAGCCAAATGGGCCGCTTTGCCTTTGAAGTTTTCCGGTTTGTGAAACACAAAAACCAGAAGATGTCCACTGTCTTCTTGCACTGTGTCACAAAGTTGTGTCGGGTAGATGACTGCGCATTGCTGATGCCGATCTGTGGAATAAGAAGAAAGAGGGAGGACACCACAGCTCCTCATGCTTCCGCTGAAGATGCTATCATAACTGCAGGCCCTATAATCACCAGAGGTGatGAAACCTCAACCACCAACTCACAGCTTGCTCCATCTAGCAACCCCTCCTCACCACTGGACACAGTGACAAGTGCTCTTGTTGCCGGGGTGGCAGTGTTGGGCCTGATGAGCCTGAGCTTCTTCATCCTTTCCATCAGGCTTCTGCGCAGGTCCAGTCCCACACCTCTGACTGGCATAGGGAACCCCAGcttcaaataaaacacacaacccTATTGCAACATCACTGCTTTCTGAATCTTTTTCCACCTGAGTCACTGCCAATTACAGAAATGATGTATTGGCAGGGCCAGAATTCAGGCCATTGTCCGCcatctatttttttcttattattgtgCTATGTTATTCCTTTCAGCTTCTTTATATCTTCTTCTACTTCATACAGTCTTTGGTTTTGATTTACAATTTACTCTTATTGTACTTGTGTAAAAACGTAGACACAGACAGCcaaagtttttgtttattacCTCACCTAGTTGGAATTAtacacccttcatgaaaatgaggaGAAAGTAATATAGTAGAAAGAATAACATATGCAATACGTGATTCTTTGAGCTCAAACTTACAGGGACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924739.2 True 1665 mRNA 0.45 11 7276448 7283973

Neighbor

gene id symbol gene type direction distance location
alcamb LOC108278292 coding downstream 22842 7229918 ~ 7253606 (-)
dyrk1ab dyrk1a,LOC108278223,LOC108435291,LOC107726100,LOC107662773 coding downstream 50902 7198831 ~ 7225546 (-)
trnap-cgg_8 NA coding downstream 80854 7195523 ~ 7195594 (-)
thap12b thap12,LOC108278397 coding downstream 81240 7187800 ~ 7195208 (-)
map6b LOC108277516 coding downstream 90184 7174352 ~ 7186264 (-)
LOC113532840 LOC108277937 coding upstream 71207 7355180 ~ 7365143 (-)
lim2.3 lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599 coding upstream 88441 7372414 ~ 7376065 (-)
acad8 acad8,LOC107582571 coding upstream 265854 7549827 ~ 7563594 (-)
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding upstream 287228 7571201 ~ 7576277 (-)
jam3a jam3 coding upstream 294082 7578055 ~ 7591818 (-)
G221844 NA non-coding downstream 55519 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 98152 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 152246 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 403089 6872831 ~ 6873359 (-)
G221682 colca2 non-coding downstream 404469 6871737 ~ 6871979 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 87397 7371370 ~ 7372320 (-)
LOC113532601 NA non-coding upstream 292581 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 848390 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 878660 8162633 ~ 8162848 (-)
G222391 NA non-coding upstream 912832 8196805 ~ 8197207 (-)
LOC113532805 NA other downstream 623030 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1252095 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1472475 5797928 ~ 5803973 (-)
G220990 NA other downstream 1565557 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1677073 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 108442 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1120856 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1657045 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2393286 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3024077 10308050 ~ 10312516 (-)

Expression


Co-expression Network