ube4a (ube4a,LOC107718272,LOC107690452)


Basic Information

Item Value
gene id ube4a
gene name ube4a,LOC107718272,LOC107690452
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9636571 ~ 9648239 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924787.2
AGCAAACTACTGATTGGTGACTGCAACACTACTGTCGCATCGTGATGACGTTTTACACAGTCGTGTTTATTCAGGAAAAGCAGTCATCTAACATATAGCGAGCAACATAACATTGCAAACAGCCCAGACTAGGCTGGTATTCAGCACATGTTGATGGAGTAGATGCTCCACTGAAATGACAGACCAGGGCAACAATAACCAGAACATCTCTCGAAACCCATTTGCTGCCCTTTTCAGTTCGCTTGCTGATGCAAAGCAGTTTGCATCAGGCCAAAAACTACAGCAGCAAGCTGAACCACCATCGGAAGAGTCTGGGGAGAGCCAGTCCGAGTCTGACAACTCGGTGTCAGACAGCATCGGGGACAATGATGACTCAGTGGCCGAGATCAGCCGCTCTTTCCGCTCGCGACAGGAACTCTGTGAGCAGCTCAATGTCAATCACATGATCCAGAGAATCTTCCTTATCACCCTGGACAACAGTGACCCTAGTCTTAGAAGTGGTAATGGCATCCCCTTGCGCTGTGTCTACCTTGAAGAGATGGCAGCTGACCTCGATGGCCAAGACTGGCTCGACATGGACACGATAGAGCAGGCCATTTTCAGCAGGCTTCTTTTACTGGAGCCGGGTAACCACCTGATCTACATGACTTCTTGCAGCGTCGTGAACCTGTCAGCGGATCGTGATGCTGGGGAGAAACTAGCCATACCGTACCTTTATGCCTGCTACCAGAGAGCTAAGGAAGAGgTCACTAAAGTCCCAGAGAAGCTGCTGTCATATGCTGTGCGCTGTAAGAACCTGACAGTGTCCAATGCTCGCACAGTGCTGCTTACTCCAGAGATCTACATCAGCCAGAATGTGTATGAACAGCTACTTGACCTGCTGCTGGAGGCGGTTAACAGAGCCCATATTGAGGAGGTGGTGGAATTTTTAGAGGAAGTTATCACTGGCCTTTTGGCTGACCAGGAAGTGCGAACTTTTGGGGAGGTTATGGTGCCAGTATTTGATATTATCCAGAGTCGTGTGAAAGACTTAGACCTCTGCCATCTGCTGCTTTATTCCTACTTGGAAATTCTAGTATACTTTAGTCGGCAAAAAGACATTGCAAAGGTTTTGGTGGAACACATTCAGCCCAAAGATCCTAATAATGGACTTCAGTATCAGAAGACTCTTCTGGGCACTATGTTAAATATATCTTGTCTGCTGAAAACCCCAGGGGTGGTGGAAAACCATGGCTTTTTCCTCAACCCTTCCCGCTCCAGCCCGCAGGAAATGAAGATTCAGGAATCTAATATCCACCAGTTTATGGGCCAGTTTCATGACAAGTTGCATCAGATCCTGAAGAATCTGCTGCAGCAGTCAACAGAGACTCGTCACCTGCTGCTGTCATGGCTGGGCAACTGCCTGCAGGCCAACATGGGTCGTGCCAAAATCTGGGCCAACCAGATGCCCGAGATCTTCTTCCAGATGTACGCTTCGGATGCATTCTTCCTAAATCTAGGCGCTGCACTCCTCAAACTCTGCCAACCCTTCTGTCGCCCTCACTCTCCAAAACTCCTAACCTTTAACCCCACATACTGTGCTCTTACAGACttgagtgaggaagagagacgCAATAGGAATGTGCATGCCAGAGGGCTTGACAAAGAGACATGCCTGATTCCTGTTCCGCCTCAGCAAACAGTTGAATTTCCCCAGTCTTACAGCCTCCTCACAGAGAACCTGATCCTCACTCAGCTCACCCTGCACCTGGGCTTCCACAGACTGCATGATCAGATGGTGAAAATGAACCAGTCGCTGCATCGGCTGCAGGGCACGTGGCGGGAGGCACAGCTCAGCGGAGGTCCGATGGCAGAGCAGCTAAGGGAACAATTTGAACGCCTCATGACTGTTTACCTGTCCACCAAGGCTGCTGCCACTCAGCCTGCCATGCTCCAGAACTGCCTCAATCTGCAGGCCTCCTGTGCCTCTCTGCTTGTACAACTCAGTCTGGGAAACCAGGGCCCTGAGCACATTCCCCTGTCCTTCCCTCTGCCTCCACTACAGAACAGCCTGCTCTGCTATGTGCCAGAGTTTTTTGCTGAGAACATGGGCGATTTCTTCATATTCCTTCGGCGCTTTGCGGATGAGGTGCTGGAGTCTTCCACAGAAAACTTGGAGCAAGTCCTCAACTTCATCACGGTGTACATGGGAAATGTAGAGAGAATGAAAAATCCTCATTTGCGGGCAAAGCTGGCAGAGGTTTTGGAGGCTGTGATGCCACATATGGATACCGTGTCACCTGGCGCTCCCCAGCCCATTATGTTCCAGCGTCAGAGGGCATTCTGCTCCTACTGCCATGCACCTCGTCTAGCTGAGGCTCTCATCACTGTGTTTGTAGACATTGAGTTTACTGGTGATCCTCATCAGTTTGAACAGAAGTTTAATTACAGAAGGCCCATGTACCCTATTCTGAAGTACATGTGGGGAGAGGAGAGCTATAGAGAGAGCATTAAGCATTTGGCGGATTTTGCATCTGAAAATCTAGAAGCCATGAATCCGCCACTCTTCTTGAGGTTTCTAAATCTGCTTATGAATGATGCCATTTTCTTACTAGATGAGGCCATACAGTACCTGAGTAAGATCAAGCTCCTCCAGATAGAGCGGGACCGTGGTGAGTGGGAGGGTCTGGCCCCTGATGCCCGCCGAGAGAAGGAGTCCAGTCTGCAGATGTTCGGACAGCTGGCTCGCTTCCACAATATCATGTCAAATGAGACGATCGGCACCCTGGCTTTTCTGACATCTGAAATCAAAGGCATCTTTGTTCATCCTTTCCTTGCTGAAAGAATCATCTCCATGCTCAATTACTTTTTGCAACACTTGGTGGGACCCAAGATGGGTGCTCTGAAAGTGAAAGACTTCAGTGAATTTGACTTCAAGCCTCAGCAGCTAGTGTCGGACATCTGTACTATTTACCTAAACTTGGGAGATGAGGAAAACTTCTGTGCCACAGTCCCAAAGGATGGGAGGTCATATTCCCCCACGCTTTTCTCTCAAACTGTTCGAGTCCTAAAGAAGATCAACAAACCTGGGGATATTATAGTGGCTTTCAGCCTCCTAGCAGATAAAATAAAGTCTCTGGCAGATCGACATCAGCAGGAAGAGGAGACCTACTCAGATGCTCCAGATGAATTTTTGGATCCCATCATGTCAACACTGATGCTTGATCCTGTGCTTCTTCCTTCTTCCAATGTCACAGTCGACCGCTCAACAATAGCACGGCACTTgcttagtgaTCAGACAGATCCTTTCAACCGCAGTCCACTCACCATGGACCAGATCAGACCCAACGAGGAGCTCAAGCAACAGATCATGCAGTGGCTAGCTGAACATAAGCAGGGGGGCGTGCAGATGGGACCCAgtggctaacacacacacacacacacacacacacacacacacacacacacacacacacacccaaaaccGCCAATCTCCTATCCACACACGCCTAAGCCACATAACACACAggacacattcattcattagaggagcaacacacacatctactgACATGGTGTAATATTCTCTGTTAATGTCAGATATATTCAAATAACATACATCTGTCTAAAGTTGATCTAATTTACATCTGCTCAAACCCATTGTCAGTAGTGATATTAAGGCCTAAATGCGCAGCAAGCTTTTATATTGCTGCACTAAACGGTTCATAATACTTGCTGTCTTGCTTTCTGCcttgtaaagatttttttttttcttgcagaaatttattttgatttgtgtGTACAGACAATATAAAGAtcttcaaaaaataataaaaaaaaacaaatagttaCATAGATTTGTCCTCTATCTTTAAGAAAAACAAGTTTAATAAATTGAAACATTTTGGTTATGATAACTGTGATCAATTGAAACAGTATTGCCGTGCTATCCGATTTTCAACAGAAGTATAGAATTCTCATAAAACGGctgttttattgatttactgCAATGATCAAATTtcacactgttttgttttaatgtttgtgtaaTCCTAATTATACCCCATATATGTTAAGTATAGACTTACACTTTAAATTCTAGAGTTTAGCTTTTTTGCTGGACAGAATGAAATTACAAACGagtaattgcattttttttccccctgttgcATTTGAATTGCGCattttactacttttttttttttttcgctcaTTACAATTGAagaagtgcttttttttaacttggtgCATGATCAGTTttgtgttacattttaatgacactgtaatgatttGATATTTGTAAATTGTCATCTCTGTGCATATTCCAGGAATTCCTTATGTTTGTAGCATTACTTCTTGAAACAACTGCGCATTTTCAGTTACTGTGGCTCATCATATACCAAACACAGAATGACCTCAGTGTGAAACTGAGAGACTGTAGATGTCCTCAATGGGTTGACCTTGTCCTCTAAAGAGAACTTTAAAGCTGACACCAAGTACTGTTCATCTTTCTTTTAATAGATGGTGCCCTTAAGAAAACTGGTTTGGAGTAAATCTGAATGTAGcctgtgattattattattattattattattattattggttttttttaatgccagcATAGAAAGTGTGCTTAAAATTTCTTGTTCATCTGTTTGCAGAGTCTCACAAGTTATTTGATCACAAAAtttgtttgtgttaaaaaaaataaaccaaaaaaagctAA
>XM_026924788.2
TATAGCGAGCAACATAACATTGCAAACAGCCCAGACTAGGTATGGCTTTTGCTTTGTTTGATATGTTTACGTTATATTATAAATAGTTAATGGCTATTTTCTACGCTTGTTAGCTGTTCTTTCTGCAACTGAGTGATAAATGCTGGTATTCAGCACATGTTGATGGAGTAGATGCTCCACTGAAATGACAGACCAGGGCAACAATAACCAGAACATCTCTCGAAACCCATTTGCTGCCCTTTTCAGTTCGCTTGCTGATGCAAAGCAGTTTGCATCAGGCCAAAAACTACAGCAGCAAGCTGAACCACCATCGGAAGAGTCTGGGGAGAGCCAGTCCGAGTCTGACAACTCGGTGTCAGACAGCATCGGGGACAATGATGACTCAGTGGCCGAGATCAGCCGCTCTTTCCGCTCGCGACAGGAACTCTGTGAGCAGCTCAATGTCAATCACATGATCCAGAGAATCTTCCTTATCACCCTGGACAACAGTGACCCTAGTCTTAGAAGTGGTAATGGCATCCCCTTGCGCTGTGTCTACCTTGAAGAGATGGCAGCTGACCTCGATGGCCAAGACTGGCTCGACATGGACACGATAGAGCAGGCCATTTTCAGCAGGCTTCTTTTACTGGAGCCGGGTAACCACCTGATCTACATGACTTCTTGCAGCGTCGTGAACCTGTCAGCGGATCGTGATGCTGGGGAGAAACTAGCCATACCGTACCTTTATGCCTGCTACCAGAGAGCTAAGGAAGAGgTCACTAAAGTCCCAGAGAAGCTGCTGTCATATGCTGTGCGCTGTAAGAACCTGACAGTGTCCAATGCTCGCACAGTGCTGCTTACTCCAGAGATCTACATCAGCCAGAATGTGTATGAACAGCTACTTGACCTGCTGCTGGAGGCGGTTAACAGAGCCCATATTGAGGAGGTGGTGGAATTTTTAGAGGAAGTTATCACTGGCCTTTTGGCTGACCAGGAAGTGCGAACTTTTGGGGAGGTTATGGTGCCAGTATTTGATATTATCCAGAGTCGTGTGAAAGACTTAGACCTCTGCCATCTGCTGCTTTATTCCTACTTGGAAATTCTAGTATACTTTAGTCGGCAAAAAGACATTGCAAAGGTTTTGGTGGAACACATTCAGCCCAAAGATCCTAATAATGGACTTCAGTATCAGAAGACTCTTCTGGGCACTATGTTAAATATATCTTGTCTGCTGAAAACCCCAGGGGTGGTGGAAAACCATGGCTTTTTCCTCAACCCTTCCCGCTCCAGCCCGCAGGAAATGAAGATTCAGGAATCTAATATCCACCAGTTTATGGGCCAGTTTCATGACAAGTTGCATCAGATCCTGAAGAATCTGCTGCAGCAGTCAACAGAGACTCGTCACCTGCTGCTGTCATGGCTGGGCAACTGCCTGCAGGCCAACATGGGTCGTGCCAAAATCTGGGCCAACCAGATGCCCGAGATCTTCTTCCAGATGTACGCTTCGGATGCATTCTTCCTAAATCTAGGCGCTGCACTCCTCAAACTCTGCCAACCCTTCTGTCGCCCTCACTCTCCAAAACTCCTAACCTTTAACCCCACATACTGTGCTCTTACAGACttgagtgaggaagagagacgCAATAGGAATGTGCATGCCAGAGGGCTTGACAAAGAGACATGCCTGATTCCTGTTCCGCCTCAGCAAACAGTTGAATTTCCCCAGTCTTACAGCCTCCTCACAGAGAACCTGATCCTCACTCAGCTCACCCTGCACCTGGGCTTCCACAGACTGCATGATCAGATGGTGAAAATGAACCAGTCGCTGCATCGGCTGCAGGGCACGTGGCGGGAGGCACAGCTCAGCGGAGGTCCGATGGCAGAGCAGCTAAGGGAACAATTTGAACGCCTCATGACTGTTTACCTGTCCACCAAGGCTGCTGCCACTCAGCCTGCCATGCTCCAGAACTGCCTCAATCTGCAGGCCTCCTGTGCCTCTCTGCTTGTACAACTCAGTCTGGGAAACCAGGGCCCTGAGCACATTCCCCTGTCCTTCCCTCTGCCTCCACTACAGAACAGCCTGCTCTGCTATGTGCCAGAGTTTTTTGCTGAGAACATGGGCGATTTCTTCATATTCCTTCGGCGCTTTGCGGATGAGGTGCTGGAGTCTTCCACAGAAAACTTGGAGCAAGTCCTCAACTTCATCACGGTGTACATGGGAAATGTAGAGAGAATGAAAAATCCTCATTTGCGGGCAAAGCTGGCAGAGGTTTTGGAGGCTGTGATGCCACATATGGATACCGTGTCACCTGGCGCTCCCCAGCCCATTATGTTCCAGCGTCAGAGGGCATTCTGCTCCTACTGCCATGCACCTCGTCTAGCTGAGGCTCTCATCACTGTGTTTGTAGACATTGAGTTTACTGGTGATCCTCATCAGTTTGAACAGAAGTTTAATTACAGAAGGCCCATGTACCCTATTCTGAAGTACATGTGGGGAGAGGAGAGCTATAGAGAGAGCATTAAGCATTTGGCGGATTTTGCATCTGAAAATCTAGAAGCCATGAATCCGCCACTCTTCTTGAGGTTTCTAAATCTGCTTATGAATGATGCCATTTTCTTACTAGATGAGGCCATACAGTACCTGAGTAAGATCAAGCTCCTCCAGATAGAGCGGGACCGTGGTGAGTGGGAGGGTCTGGCCCCTGATGCCCGCCGAGAGAAGGAGTCCAGTCTGCAGATGTTCGGACAGCTGGCTCGCTTCCACAATATCATGTCAAATGAGACGATCGGCACCCTGGCTTTTCTGACATCTGAAATCAAAGGCATCTTTGTTCATCCTTTCCTTGCTGAAAGAATCATCTCCATGCTCAATTACTTTTTGCAACACTTGGTGGGACCCAAGATGGGTGCTCTGAAAGTGAAAGACTTCAGTGAATTTGACTTCAAGCCTCAGCAGCTAGTGTCGGACATCTGTACTATTTACCTAAACTTGGGAGATGAGGAAAACTTCTGTGCCACAGTCCCAAAGGATGGGAGGTCATATTCCCCCACGCTTTTCTCTCAAACTGTTCGAGTCCTAAAGAAGATCAACAAACCTGGGGATATTATAGTGGCTTTCAGCCTCCTAGCAGATAAAATAAAGTCTCTGGCAGATCGACATCAGCAGGAAGAGGAGACCTACTCAGATGCTCCAGATGAATTTTTGGATCCCATCATGTCAACACTGATGCTTGATCCTGTGCTTCTTCCTTCTTCCAATGTCACAGTCGACCGCTCAACAATAGCACGGCACTTgcttagtgaTCAGACAGATCCTTTCAACCGCAGTCCACTCACCATGGACCAGATCAGACCCAACGAGGAGCTCAAGCAACAGATCATGCAGTGGCTAGCTGAACATAAGCAGGGGGGCGTGCAGATGGGACCCAgtggctaacacacacacacacacacacacacacacacacacacacacacacacacacacccaaaaccGCCAATCTCCTATCCACACACGCCTAAGCCACATAACACACAggacacattcattcattagaggagcaacacacacatctactgACATGGTGTAATATTCTCTGTTAATGTCAGATATATTCAAATAACATACATCTGTCTAAAGTTGATCTAATTTACATCTGCTCAAACCCATTGTCAGTAGTGATATTAAGGCCTAAATGCGCAGCAAGCTTTTATATTGCTGCACTAAACGGTTCATAATACTTGCTGTCTTGCTTTCTGCcttgtaaagatttttttttttcttgcagaaatttattttgatttgtgtGTACAGACAATATAAAGAtcttcaaaaaataataaaaaaaaacaaatagttaCATAGATTTGTCCTCTATCTTTAAGAAAAACAAGTTTAATAAATTGAAACATTTTGGTTATGATAACTGTGATCAATTGAAACAGTATTGCCGTGCTATCCGATTTTCAACAGAAGTATAGAATTCTCATAAAACGGctgttttattgatttactgCAATGATCAAATTtcacactgttttgttttaatgtttgtgtaaTCCTAATTATACCCCATATATGTTAAGTATAGACTTACACTTTAAATTCTAGAGTTTAGCTTTTTTGCTGGACAGAATGAAATTACAAACGagtaattgcattttttttccccctgttgcATTTGAATTGCGCattttactacttttttttttttttcgctcaTTACAATTGAagaagtgcttttttttaacttggtgCATGATCAGTTttgtgttacattttaatgacactgtaatgatttGATATTTGTAAATTGTCATCTCTGTGCATATTCCAGGAATTCCTTATGTTTGTAGCATTACTTCTTGAAACAACTGCGCATTTTCAGTTACTGTGGCTCATCATATACCAAACACAGAATGACCTCAGTGTGAAACTGAGAGACTGTAGATGTCCTCAATGGGTTGACCTTGTCCTCTAAAGAGAACTTTAAAGCTGACACCAAGTACTGTTCATCTTTCTTTTAATAGATGGTGCCCTTAAGAAAACTGGTTTGGAGTAAATCTGAATGTAGcctgtgattattattattattattattattattattggttttttttaatgccagcATAGAAAGTGTGCTTAAAATTTCTTGTTCATCTGTTTGCAGAGTCTCACAAGTTATTTGATCACAAAAtttgtttgtgttaaaaaaaataaaccaaaaaaagctAA

Function

symbol description
ube4a Predicted to enable ubiquitin-ubiquitin ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBE4A (ubiquitination factor E4A).

NR:

description
PREDICTED: ubiquitin conjugation factor E4 A isoform X2

GO: NA

KEGG:

id description
K10596 UBE4A; ubiquitin conjugation factor E4 A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924787.2 False 4705 mRNA 0.45 20 9636571 9648239
XM_026924788.2 True 4714 mRNA 0.44 20 9636571 9648146

Neighbor

gene id symbol gene type direction distance location
kmt2a kmt2a coding downstream 869 9594954 ~ 9635702 (-)
c1qtnf5 c1qtnf5,LOC107690457,LOC107601727 coding downstream 47279 9585644 ~ 9589292 (-)
mcamb mcam coding downstream 69217 9533050 ~ 9567354 (-)
LOC113532830 LOC108277452,LOC107578747 coding downstream 822023 8799467 ~ 8814548 (-)
scn3b scn3b coding downstream 840543 8775146 ~ 8796028 (-)
pdzd3a LOC108277664 coding upstream 7343 9655582 ~ 9664634 (-)
nlrx1 nlrx1 coding upstream 16672 9664911 ~ 9674446 (-)
LOC117599039 LOC108277821,LOC108277820,LOC108277479,LOC108277480,LOC108277478,LOC108411099,LOC108411100,LOC108411104,LOC108411102,LOC108411101 coding upstream 69506 9717745 ~ 9822687 (-)
LOC113532826 LOC108277820 coding upstream 174830 9823069 ~ 9835087 (-)
LOC113532742 LOC108277821,LOC108277480,LOC108277478,LOC108277820,LOC108277479 coding upstream 191077 9839316 ~ 9866331 (-)
G222852 NA non-coding downstream 592820 9037480 ~ 9043751 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 1088197 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 1145287 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 1394395 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 1439364 8196805 ~ 8197207 (-)
LOC117599042 NA non-coding upstream 109919 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 154253 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 238777 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 283117 9931356 ~ 9978560 (-)
G223408 NA non-coding upstream 387503 10035742 ~ 10035982 (-)
G222809 oaf other downstream 689672 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1157659 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2173072 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 2983153 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 3612218 6021145 ~ 6024353 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 29020 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 659811 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 1060013 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 1540011 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 2740627 12388866 ~ 12407489 (-)

Expression


Co-expression Network