pdzd3a (LOC108277664)


Basic Information

Item Value
gene id pdzd3a
gene name LOC108277664
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9655582 ~ 9664634 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924793.2
GTGTGCACCTTGACCCGTCTCACTGCCTGCAATCTCGTCATCCAGCTAGGACACAAGCAAGCAACACCATGAGATACACCACAGaaccaGGAGATGCAACCAGATGTGCCACAGAAGTTCACTTTTAACCCAAAAGAAGGGATTGACAATCCAGCGCTGATGATCTCAGACGACCCAGAGCCAGACTTGTGTCCACGGTTATGCCTGCTGAAGCGAGAGGAAGGCCAAGGCTTTGGCTTCTATCTGCGGAAAGAGAGTGGCTGCAGGGGTCATGCTGTGCAGCAGGTTGCCCCATGGAGTGCAGCAGAGCGCAGTGGCCTGAGAGATGGAGACCGCATTCTAGAGGTCAATGAAGACTTTGTGGACAACCAAGAGTATTCCAGGGTTGTGATGAAGGTGCAAGCATCTGGGCTACAGCTGTGTCTGTTGGTCTTGAGCGCTGCGGAATAtgaaacagctgtgtgtgaaggAATAGACCTCATGGCTTTGACCAGGGCTCATCGAGGTGAAGGCTGTGCACGTCCTCGTTTGTGCCACATCAGCAGAGAGCCCGGCATTGGCCTGGGACTCAGCATCATCCCCATTGAGggtgagagAGGAAAGTATTATCTAAGCCCAGTGAGAGAGGGTCCAGCAGAGAGGGCAGGTGTTCAGCCAGGAGATCATTTGCTCTTCATCAATGGTGTCATGGTCTCAAAACTCACACATTCTGCACTGATGAAAATGtTTAAAAAGAGTGGCGAATATGTGACCATTTTGGTGATAGACAGCAGAAGTGAAGAGAGCTATATGCGTCGAAGACTGCCCATTCTGCCCGCTTTTGCCAGTACTCATAACCTGCCTCACAGGCCAAAAACTCTACACCTTACTCAGGGACCACAGGGCTACGGGTTCCTGTTAAGACAAGAGAAGCTGACTACAGGACACATTGCTCACCTGCTGCGAGAGGTGGACCCATGCAGCCCAGCTGAGGCAGCAGGGATGGAGGATGGGGATCTGCTGCTGGCAGTCAATGGAGAGCAGGTGGAGAACTTGGAGCATGAGGACATAGTCAGCAGAATACGGCAAAGCGGTCAGCAGGTCACACTTACTACCATCTCTATTCAAGGCAGAGACTactacacacagCTGGGTCTTTCACCACTGATGTTTTATGAAGAATGCATTCCACAAAGAGAGCGTTTCCCCACAAACACTCTACCATCCAACAACCTGCAGTGTCCTCGACTGTGTACCCTTCTCAGAGAGGACACAGGATTTGGCTTCAAGCTGGCCTGCAGCCAGGATGAGTGTAGGGTCTACGTTGGCCAGGTGGAAGCTGGGCGTGCTGGAGAGAGAGCAGGGCTGCGGGAGGGGGATGTGATTGTGGAAGTGAATGGGCAGAACGTGGAGCATGTGCATTTTGAGGAGGTGGTGACACTGATCAAGAAGGGAGGCACTTCACTCATGCTGCTCGTGGTAGACAAGGATGGGTTTGAGAAGCTCAGAACAAGTGGCGTACCAATAACTGCAGATGTGAGCTTGCACAGCACACAGGTTCCAGATTCAACACAAGACAATTTTGTATAAAGGGTTGTGAACTGACCCCAATAAATCACTGGAttgctcattttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24059 PDZD3; PDZ domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924793.2 True 1614 mRNA 0.51 11 9655582 9664634

Neighbor

gene id symbol gene type direction distance location
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 7343 9636571 ~ 9648239 (-)
kmt2a kmt2a coding downstream 19880 9594954 ~ 9635702 (-)
c1qtnf5 c1qtnf5,LOC107690457,LOC107601727 coding downstream 66290 9585644 ~ 9589292 (-)
mcamb mcam coding downstream 88228 9533050 ~ 9567354 (-)
LOC113532830 LOC108277452,LOC107578747 coding downstream 841034 8799467 ~ 8814548 (-)
nlrx1 nlrx1 coding upstream 277 9664911 ~ 9674446 (-)
LOC117599039 LOC108277821,LOC108277820,LOC108277479,LOC108277480,LOC108277478,LOC108411099,LOC108411100,LOC108411104,LOC108411102,LOC108411101 coding upstream 53111 9717745 ~ 9822687 (-)
LOC113532826 LOC108277820 coding upstream 158435 9823069 ~ 9835087 (-)
LOC113532742 LOC108277821,LOC108277480,LOC108277478,LOC108277820,LOC108277479 coding upstream 174682 9839316 ~ 9866331 (-)
ulk2 ulk2,LOC107717276,LOC107657566 coding upstream 376108 10040742 ~ 10070727 (-)
G222852 NA non-coding downstream 611831 9037480 ~ 9043751 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 1107208 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 1164298 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 1413406 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 1458375 8196805 ~ 8197207 (-)
LOC117599042 NA non-coding upstream 93524 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 137858 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 222382 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 266722 9931356 ~ 9978560 (-)
G223408 NA non-coding upstream 371108 10035742 ~ 10035982 (-)
G222809 oaf other downstream 708683 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1176670 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2192083 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 3002164 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 3631229 6021145 ~ 6024353 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 12625 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 643416 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 1043618 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 1523616 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 2724232 12388866 ~ 12407489 (-)

Expression


Co-expression Network