alcamb (LOC108278292)


Basic Information

Item Value
gene id alcamb
gene name LOC108278292
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7229918 ~ 7253606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924862.2
GAACGGGAGGCGCACGCGCTAACGCCTGGAGCAGTGTGAATTGAGCGCGCGCTGTGTATCGTGCTGCTCGTGCAGAGTGCAGACGCTTCACAAACCCAGGATTTATTTCAGAAAGTTGAGGTTTCTTTTTGTTCAAGACGAGGCGGAAAACTGATTTTCAAGAATGCGTGTGACTGCGTTTTCTGCGTGCGTCCTCATCGTGTCCCTGCTGGAGCAAGtgagtGGACACACAACCATAGTGGGCAAATATGGTGAAACTGTTGAGGTGCCTTGCAACAAAGGAGACATCAAACTTGAGGACATCATAATAATTAAATGGAAATATACCAAAGCGGACGGCACCACCGGCGATCTCCTGACAAAATCAAAGGCTCAGAATGCCTCATACTCCCAAATTGTGGAGTACCAGGGAAGAATCAACCTAACAAAGAACCTCAGCCTGCAAATTTCCCAGGCAAAAATAGCTGATCAGAAGACATTCACCTGTATGGTGGTGGCAGGAACGGACATATTGGAGTATCCAGTGCAAGTGACAATTCAGAAGACCCCTTCTCCGCCCACAATCACAAATCAAGCCAAAGTGTTAGAGCTGGGCAAGCTAACAACGCTGGCAGAATGTTCTACTAAAGATGCCAATCCAGTAGCTAACATCGTCTGGCTGAAGGACAATGTTCCACTTGTAGCTGATGGGAAAGTGGTCACCATCACACCGTCTgtgcagacagacaaagacaccGGCCTCTCGACTACATCCTCCAAGCTCGAGTACGCAGCTACGAAGGCAGATATGAATGCCAAGTTCACTTGTGCCGTCCAGCATAAGAGCCTTTCCTCGGACCTCGTCTCTGCTCCTATGACCTTTGTCATCCATTACCCCAGTGAAAAGGTCAGCCTCCTGGTCGTGTCTGCAGTCCCGATAAAGGAGGGAGACAACGTGACCCTGAAATGTGCAGCTGATGGGAATCCCCCACCGACTAGCTACAACTTTCATATCAAGGAGAAGGTGACCAGGGAAAACTCGGACACTTACACACTCATCGGCGTCACCCGGGCCGACAGTGGAGAATATAAGTGCTCCCTGGTGGACGACGAAGCAAAGACAGCCTCTACCCGGTTAACCGTTATGTACTTGGATATCACGAGCGTCCCCAAAGGAAAGATTGCTAAACGTTTATCCGAGAGCTTCGAGGCAAAATTAGTGGTGAACGCCTCTGAAATTCCGCAAGTCTCATGGACAAAGAACAACATCAAACTGGATGGTGAGCCCAAGTTTGACAAGGTGAAATACTCAGACTCCGGAGTGTACGAGTGTGTGGTTTCCATGGCTGGACTTGTCAAAAAAGCATCATTTGAGCTGAGTGTCCAAGGTGCTCCGGTTATCACTAAGCTGTCTAAAGGGCGCAGTAATGTAGGCAAGCTTCTGAGCTGCAAGGCTGAAGGTTCACCCAAACCCACTGTGCAGTGGAGCATCAACGGCACTAATGCCTCTGAGAGTTCCTTCGTGGATGGAAGAGTCACATACAATCTCACAGTGATTCCAACAGGCAATCTCACAATCAACTGCACAGTTTCTAATGAGCTGGGCTACGACACAAAGAGCATTGACATATCCACATCGTTGGAGGAGACAACAATGGACAAAAGGGAGCTGCCAGAAGATTCTAAAGATCAGACACAAGTAGCAGTAGGAGTCGTCATAGGCCTGATCGTGGCTGCTGTCGCTATCGGTCTGGCCTACTGGATCTACATGAAGAGAACCAGGGAAGGCACCTGGAAAAcgggagaaaaagagaatggCACACTGGAGGAAAGCAAAAAGCTGGAGGAAACTCAGAGTCAGAAAGCTGATGTGTAAAACCAAAGGAGTAAGAAGGAGAGGAGGCAGTATTGTAGCAGACTGTATTACAAACTACGGAAACGTTTGGGAAGCTGATAGGAGTCCATCTTATTTGTTTGACGAACTTTATCTGATctagtgtgtataatgtatatcaGCATCCTCTTTACAAATGGGagatttaataaatgatgtgtGTTGTATAATTGTGAATCTCCTGCACTAAGGATTAACTGTGGAATGAACCTGTTCAAAACTTACATGTAAATTACGTTGCGGTTTAATATTTGGTGTGTTTGAAAGAATAGTTTACTTTTTTGTtgcttattgtttattaaacacagaTTTAATTAGTTCAGGTCAATTTACCTCAACACTAGCCTGTAAACTGTGACTCTGTATGTGTTCTGGAATAAGAGGTGTGTCACGCTGTTTGTTctgagtttttgttttttcacatcTCCGCTCCACGTAAAGTACCTGAGCTGTGACTACAGTAACAGTTTTCTTTTGCAGTTCATTGAGCACTTGGTTATTTTCATCAAGATGTGATGGTAATTCTGAAATAAACCATTTTGGAAGTTAATATAAGCTTGCATGTGCATTTCCAGTGTCCAGATTTCCTTGGCATGGTAATCAAAAGCGCCATTAAAAAGTTAAACAGTATGCTGAACGCAACAAttaaaatctatatttctatGGTTTGGCAAAATTATAATGaagtaaatcattaaaatgctaataaggACAAATGTAAATTTTGAATGCGCCATGTTTGGATGTTTGGTCTGTTTTTAAGAGTTTGTCATTGACTGCAAATACTATACTAACCATATCTACAGTACTGATATGTTGCCTGtaatacatttgtttaatttaaacctAATACTGA

Function

NR:

description
PREDICTED: CD166 antigen homolog A-like isoform X2

GO:

id name namespace
GO:0060385 axonogenesis involved in innervation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0021885 forebrain cell migration biological_process
GO:0030424 axon cellular_component
GO:0042802 identical protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924862.2 True 2729 mRNA 0.44 16 7229918 7253606

Neighbor

gene id symbol gene type direction distance location
dyrk1ab dyrk1a,LOC108278223,LOC108435291,LOC107726100,LOC107662773 coding downstream 4372 7198831 ~ 7225546 (-)
trnap-cgg_8 NA coding downstream 34324 7195523 ~ 7195594 (-)
thap12b thap12,LOC108278397 coding downstream 34710 7187800 ~ 7195208 (-)
map6b LOC108277516 coding downstream 43654 7174352 ~ 7186264 (-)
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding downstream 57170 7163957 ~ 7172748 (-)
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding upstream 22842 7276448 ~ 7283973 (-)
LOC113532840 LOC108277937 coding upstream 101574 7355180 ~ 7365143 (-)
lim2.3 lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599 coding upstream 118808 7372414 ~ 7376065 (-)
acad8 acad8,LOC107582571 coding upstream 296221 7549827 ~ 7563594 (-)
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding upstream 317595 7571201 ~ 7576277 (-)
G221844 NA non-coding downstream 8989 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 51622 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 105716 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 356559 6872831 ~ 6873359 (-)
G221682 colca2 non-coding downstream 357939 6871737 ~ 6871979 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 117764 7371370 ~ 7372320 (-)
LOC113532601 NA non-coding upstream 322948 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 878757 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 909027 8162633 ~ 8162848 (-)
G222391 NA non-coding upstream 943199 8196805 ~ 8197207 (-)
LOC113532805 NA other downstream 576500 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1205565 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1425945 5797928 ~ 5803973 (-)
G220990 NA other downstream 1519027 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1630543 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 138809 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1151223 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1687412 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2423653 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3054444 10308050 ~ 10312516 (-)

Expression


Co-expression Network