itgae.2


Basic Information

Item Value
gene id itgae.2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6558532 ~ 6579961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924891.2
ATGCATTCACATAGAGGGCAGGAAGACAACACCGGAAACTGTACATGTGCAGACAATGTAACAGACACTTGTGGCATATGAGTTACTCAACTGCCTCAGCAAGATGTTTGCAGCTGTGCTGTTTATAACAGGAATATACACAGTAGTGGGATTCaacatatacacaacaccagTGAGCAATTTTACAGATGAAGACCCACTGTTTGGTCAAACTATTATTCAATCAAGGGACGGaGTTTTTGTTCCTTCTCCTACCTCTGGAGATGTTTTCAGATGCACAGAGGAAAACTGTTCTAGAATGAAAGTTACtgATGTAATGAAAGGCCTGAGTCCAACTGCATCTATAGCATCCAGGTTTAGTGAAGATAAGGAGCACCTTCTGGTTTGTAACCAAGTTCGGACAAGGAACTCATCAACTGAGTATTTCAACGGAAATTGTACACATGTGTTTGGGCATCAGGAAAAGAGTAAAATCTATCCTGATAAGTTGGTTTTACAGCTACTGGAACAAAATGcaaacaacaacatcaacagcaAAAACAATGACCAAAAATCTCTTCAACAAGaccacgggaggaggaggagagctgTACAGAATGATAAGGACACTGATGAcgatgaagaagatgaagATGCAGGGACAGAGATCGCGTTTGTGCTGGACGGCTCTGGTAGCATTGACCCGCCGGATTTTGAAAGGGCCAAAGACTTTATTTATAACGTGATGAACAGTGTTTGGACAACATGTTTCAGTtgcaaCTTTGCAATAGTGCAGTATGGGAGAGACATAAGGACAGAACTCTCtctgaatgaaaataatgaCAGTCTCGGAGCCTTGGATAAGGTGAAGAACATAAAACAAATTCATGCAATCACCAAGACAGCTTCAGCCCTCTACCATGTTCTCACAGACGTTTTTGTTCCTCAAAATGGATCAAAAAAGAACGccaaaaaaatgattattctACTGTCTGATGGAGAGATGGCAGGAGATGAAAGAAACCTCACAGATGTATTGAACATGCCACAGATGGAGGGGATTGTTCGCTATGCTATAGGGGTGGGGCCAGAAGTTCTGAATAAACCAAATGCAATCAAAGAGATGAAAGAGATAGCTGGCAGCGATAACAGATTTTTCAAGGTTTCTAATTATGCTGCCTTGGAAGAAATTCTTTCTTCTTTGGAAAAAAGCATATATGGGATTGAAGGCATACAGAAGGGAGCAGGATTTGAACTTCAGCTTGCAGAGGCTGGATTTAGCTCTCACTTTACCCATGATGGTTCGATCCTTTTTGGTGCTGTGGGGGCCTATGACTGGAGTGGAGGgatcattttgaaaaaaaataacgaAGAGCCTGTGGGATTTTTTAATGCAACCAAGGAAGAACCCCGATTTTCTTATTTGGGTTACAGTGTGGCATCTGCACATATGGCTAAGAAAACACTATATATATCCGGGGCTCCCAGGTACAACTTGACTGGTGCAGTCTTCATTTTTGATGGGACCAATCAGGATTTGCTACAAGGAGATCAGGTAGGGTCTTATTTTGGATCGGTTCTCTGCTCCTTGGACATCAGTAATAATAAGGTGACAGATTATCTTCTGGTTGGAGCGCCGCATTTCCATGTAAAAGGGGAAGAGGGCAAAGTGCTGGTTTACAAGCTGAATGAAGGGAAATTTGAGAAAGCCTCTGAATTGCGTGGACTAGAAAAGTACATATTTGCAAGGTTTGGCTCTGCCATAGCCAATATTGGAGACATTGACGGGAACGAATTCAGTGATGTGGCAGTGGGAGCTCCTCTCGAAGCGGATAATGCAGGGAGTGTCTACATATATAATGGATTCCATGACGGGATAAAGAACCATTTTTCACAGagAATCACACCCTCAGACTTCGGAATTAAACTTGTGCACTTTGGCCAGGCAGTGAGTGTCATGTCTTTCTCAGAAGAAAACGACCAACCACTAATCAGTGTTGGGAGTAAAGGAGCCATAACTGTATTTCAGAcaattcctgttatcattattaaaccaaatataaatattgatgATACACTAATTACCATTGATAAGCAGAGCAATGATGAATCAAGCAAATTTGAGACAAAGCTCAGTATTTGCTTCAATACACCAAAAGGAGATATTAAATCCGGTCAACTACCAATTGAGTACCATATTGATTTGGACTCGGGTAAAGAACAAAAGCGACTGGTTCATGTCAAGCCTCATGAAGGGAGAAGGAGCTTTACTCTGACAGAATCCCAAACCTGCATCGATCCGATAGTTCTGAAATATGTGGGCTgctctgactgtttttcacctATCAAGATTAGGTTGAGTTTTACATTAACCCCATCCACTGGATTACCTATCCGGGTTCTTGATGCATATACTCCAAAAGAGGCCATAGCAGAGATTAAGTTTCAAAAGGACTGCAGCAGTCAGAATTGTAAGCCTGATATTTCACTGGCTCACTCAAAACTCAGCGATGAAGTTTTAATAATTGGCTCCAGTCAAACCTTGGATATAAAGTTTAATCTTATTAACATTGGGGACAATTCCTATATGACCACTCTGACTCTGACATATCCTGAAATACTATCTTTCAAGaaatctgaaggTGGAACATGTGaggataaaaatgacaaacatcaAATAGTGTGTAAACTTCTGCATCCCATATTCAGAAGCAAGGAACAGACCCATGTTACAATCGCCTGGCAGCCTATCGACAGAAACGCAAAACCCACAGCTTCAATTACTGCTCTCTTAACAGGtggaaATAATGGCAGTGAGGAACTTAGTAGGAAGATGTATAAATTCACAGTGAAGAAAGCCCTTGAAGTTCAGCTTATTGGCGCAGCCACGCCAAACAGATTGACTATTACAGAGGGGGAAGAAAGCAAACAACAATCGCTAGATTTCAATTTTAagCTGCTGGGTGAAAACACATATAAGGCCAAAATAAGTGTGACAATAACAATTGAAAAGCAGTCACAAAAAACTGACATGATCATCAAGAACGTTGAACCAACGAACTGTTCATGGCCCTCTGGTGGAAATGTTAAGAGCACCTACCAGATTGTATGTACTCTGACAGAGTTGCAGGAGATTAAAATTATGGCTCAAACGCATATCCATGACATTCAGgataaaaatgaaaagatcaCTGCCATGGCAGACATTACATTCGATGAGAGCATCTATCATGgaataaacattataaagaCACAGAAAGTAGTGGTTTCACTTATTAAGCTGACAGTTGTGAAGTCAACTGCGCTTATTGTAGGCAGCTCCATTGGAGGGTTTCTCCTTTTAATCTTCATTATCATTATTCTCATCAAGTGTGGATTTTTCCGCCGACGCCATAAGCTGGCTCGCACATCGAGTACAAACTGAGGACATGCACAACGTTGACCTGATTATTACTTATCATTGTCCTTTTTAGACACATCtgcacaaatgttttattattattaaaattgtttttttattattattaatacagttGCAAACACTTTGTTATTTGGGATATCTTATTAACTACCGAATCGCGGGATAGCTCCCAAATGttatttctatgtttttatttttacttaaaattcatttaattccTTTGTTTTCCTAAAACcttgaggtgtttttttttttacctgcccTGTGTAGTTTTCATGTGCTCACAGCTTGTATATGTTTTTTGCCTTCGATTCCTTGTATTACTATACAGGAAGTAAtggtaatctttttttttagctttattcTTAGTCATTTACCCAAAGTCTAAAATTATCAATTTCTATCACCAAAAtgtatgcaaaaataatatttgtcaACTCAGGGCCTGTTCTCTTGCCTTATGTAAGTTaattgaaaaaatgaaagttaaaatTCTGTCTCCGCTTTTATAGAAATGAATAACAGAGCCCATTTTTACACAGGTTTAGCACATGAATGAGAAGTATTTCTATACTCTGAAAAACCTCACTGCTCTCTGCTTAGTCCTTAacgctgtgtttttttattttcatccatTCTTTAACTCTGTCTTTTAATtcatatgaaattaaataaacaattcttTTTCCATGA

Function

NR:

description
integrin alpha-E-like

GO: NA

KEGG:

id description
K06524 ITGAE, CD103; integrin alpha E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924891.2 True 4093 mRNA 0.39 32 6558532 6579961

Neighbor

gene id symbol gene type direction distance location
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding downstream 4081 6536048 ~ 6554451 (-)
mrpl28 mrpl28,LOC107659942,LOC107554268 coding downstream 25648 6527472 ~ 6532884 (-)
mos mos coding downstream 44799 6511236 ~ 6513733 (-)
hip1 hip1,LOC107714882,LOC107659933,LOC107672373 coding downstream 69947 6447125 ~ 6488585 (-)
zgc:103681 LOC108277991,LOC108443709,LOC103035104 coding downstream 164225 6386179 ~ 6394307 (-)
LOC113532622 NA coding upstream 4002 6583963 ~ 6605064 (-)
tubd1 tubd1,LOC107581164 coding upstream 168955 6748916 ~ 6756266 (-)
LOC113532877 LOC108277444 coding upstream 251273 6831234 ~ 6840971 (-)
LOC113532633 pou2af1 coding upstream 303167 6883128 ~ 6888991 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding upstream 351561 6931522 ~ 6936069 (-)
G221448 dnhd1 non-coding downstream 43567 6513828 ~ 6514965 (-)
G221461 NA non-coding downstream 140907 6416882 ~ 6417625 (-)
G221450 NA non-coding downstream 141724 6326091 ~ 6416808 (-)
G221245 NA non-coding downstream 353602 6203064 ~ 6204930 (-)
G221214 NA non-coding downstream 466098 6091913 ~ 6092434 (-)
G221618 NA non-coding upstream 107628 6687589 ~ 6688311 (-)
G221638 NA non-coding upstream 179449 6759410 ~ 6759618 (-)
G221633 NA non-coding upstream 180695 6760656 ~ 6761787 (-)
G221659 NA non-coding upstream 226194 6806155 ~ 6806367 (-)
G221681 NA non-coding upstream 287823 6867784 ~ 6870274 (-)
dynll2a dynll2a,LOC107554284 other downstream 534179 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 754559 5797928 ~ 5803973 (-)
G220990 NA other downstream 847641 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 959157 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1587013 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 39211 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 812454 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1824868 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2361057 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3097298 9677259 ~ 9713059 (-)

Expression


Co-expression Network