jam3a (jam3)


Basic Information

Item Value
gene id jam3a
gene name jam3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7578055 ~ 7591818 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924934.2
CCATGGCAACTGAGCGGCGGCAGCATCCTCCCGTTCGTTCACCGCGCGCGCGGACAGCTGAGCTTAGCTAAATGTGCTTCCAAAATGGCGACGGCACGTCAAACATTCGTAACGGTGCTGCTCTACTCGCTCTGTTGTGTGACATTTGCTGTAATTCTCAGAACTACAGACAAAGACGTGTGGGCCAATGAATTTGAGTcaatCGAATTGTCCTGCTTGATAGAGTCCATATCTACAAACAACCCGAGAATTGAAtggaagaaaattaaaaatggggTTCCCAGTTATGTATATTTCCAAAACAAAATATCAGGTGATTTGGAGAACAGGGCGCTGTTGAAAGAACCTGCAAACCTGCTGATCCTGAATGTCAGCAGATCAGACAGCGCGATGTATCGCTGCGAGGTGGCTGCCATTGACGACCAGAAACCCTTCGATGAAATACTTATAAGTCTGGCTGTGAGAGTGAAGCCGGTGGTGCCACGGTGCAGCGTTCCAAATTCGGTCACTGCAGGCTCTTCTACAGAGCTCCGGTGCATGGAGAGCGAGGGCTACCCTCTGTCTCACTATCAGTGGTTTCGCAACAACGAGGAGCTACCTGAGGACCCCAAAACCAGCATCCGCTTCTACAACTCCTCATATGTCACGAATGCTGAGACTGGGTCACTGaaattcagaataGTGAGGAAAGAAGATGCAGGGGAGTACTACTGCCAGGCCAGAAATGACGCTGGTTACGCAAAATGCTCACCACAGCTTATGGAAGTCTATGATTTTGACATCGGGATGATGCTCTTAAAGATTGTAGCAGGAGTGATCGCTTTCATCCTTTTAACAGTGGGGCTCTGTGTGGCTCAAAAACACGGCTACTGTTCCTGCAGGGACCATACAGAAAACGATTATAAAGTCCCTCAGTATGACAGTGGGAAGGACTGTGTCAGTGCAGATGAGgggCATTTCCGGCACAAATCCTCTTTTGTCATATGACCAAGAAAAGATGAAGGAGATGCAGGAGAGACACAGCTGAACTGTGTGCCACAAAATGAACTATCACAATGTGAATTTTCTTCTAAGGTGCATAAACATGATCTTCTTTGCCAAAGCTGTTAACAAACATCACAGTATTTTACAGACGATACACTATTACAATTCTCTGGGAAAGTTTTATTCTTCATATGTTACAGGAGCGAGTGCGTTCATCCTTTTAACTGTTTCCTAAAGGAAGTGTAAGGAAGGTTTTTATGTAAttcacaaagttttttttttttttccagaacattACACTTAGTGATATGATGTGTACATGGTTCAGGAATGAATGTGCAAAGAAGCAAattgtgcttatttttattgctgTGGAACTGAAAGTGCATCTACATTCTGCTATGTGACAGATCGGACAGAGCAGCACAAGGCAGGCGTCAATCAGCTAAGTCAGTCACTGAGCTAAATACAGTATTCTGTATTTCAGACACACTAAATCATTTTTGACTCTAGTTAAAGCcagtgtgggggtgtgtgtgtgcgcgcgcagtGCCATGCATGACTGGTTTTGATATGTCGCGTTCATGGGATGTTATGTGTTGGTGTTTTAGTGCAAGTTATGTATGTCGTAAAGTACAGTGTAAAGTTTTAACAGCTCAGTTTTAGCATTCAATCAAAAGTCTTTTCTGTTAAATCCATAGACCTGGTTGTGCTAAATGACAAACTTCTAGTTCTACttcattttagtttatttttaaataatagatacacattatatatttatgattctGTCcgagtgctctctctctctctccccctttctctctctaagTGAccttctgtattttttattgttttatattatgaTTCTTTGGACAAATTGTCCAGCTTTGTGGCTGTGTTCAGGTTTAAGTCTGTTTGTGGTATTTGGTTGTAGCAAAGTCAGATGGAATTGCTGCGAAGATTGTGGGCCATGACCAATCAATACTGATAATAATCATGACTTAATTTACACTATTTGGAAATTTCcagacttcttcttcttcttctacagaTCTAATAAAATTAACTCACTATCCATTCACACTACCATTACAAACTTATTTTCTCCCAGGAGGCTGgtttcaaaatgtctttttattccAAAGAAGCTGTTTCCTGActgttaaatattcaaaatgtcTTAGAGTTTTGTGAGTTTTGACAAATTGTCTTCCATGATGGCATGTCCCACTGTCTTACAGGCAGCATGACTGACTGTTATTATGAATGCTGTAAAAATGCACCATGGAAATGAAGGGTTTTGGCTGAGGTTCAGACAGCGCAGGGAGGTAATCTCTTCTATTAGAAATGAAATATCACTAAACTTTGCACCAAATTGACAGTACCGGAATGTGAACTGTGCTAGGTTTGATTTGAATAATATTTGGGCTTCATGTTGGAGATGTTTGATTATGCATGGCTAAGCAGAACAGTGCAAGATGAATTACTCAAAACATGCTTACAATGATTtcctgaaaatattaaaatgtatatacagtatttagcCTCACCACAACTGCCTGTTTgatacagaaatattttagcGTATCTTATAAAATAAGTGTTATGGAGTCTATTCGGATATTTGTTACTCTTTATTACCGTGTGCCAGTTCATTGTCAGTGTTGGTGTAGTCATGTTTGCTGCTTAATTCACATATATGGTCTAAGAACGTGCATTCTGGCCAAAATGATTCCATAGTTATtctataattacaaataattattaaataatctttTGATTTAGATTGCAATTTCAGATATATATTCTTTATCTGAAATACAtgttatatatctatatatctatatataaaatatctgaCATTCCaagtataatgaaatattttgtgtgtgccATTTACATGACAAAATGATAAGCTCACCTGTCATCCTGTTCTTTTTGTAttgtcagagtgtgttattttatgtggtgttggttaaaaaaaaaagaaaaaaaattgtaatgtaaTTCTAATGTAAGATTTGAACAGCATTAAACCGGTATAAAGTtctgatgtatttattttctgtaaagtaGATGACAACATTACTCAGGAGTTTGAAAGAAGTGACAATTTCTGTACATTGGTAGAGTTTTCGTGattctattcattttatttaataaagacgTTGTTATAGAACATA

Function

symbol description
jam3 Enables cell-cell adhesion mediator activity and integrin binding activity. Involved in several processes, including apical protein localization; hematopoietic stem cell migration to bone marrow; and negative regulation of integrin activation. Acts upstream of or within positive regulation of cellular extravasation and positive regulation of membrane permeability. Located in several cellular components, including cell-cell contact zone; desmosome; and microvillus. Is integral component of plasma membrane. Part of filamentous actin and protein complex involved in cell adhesion. Colocalizes with bicellular tight junction. Biomarker of systemic scleroderma.

NR:

description
junctional adhesion molecule C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924934.2 True 3170 mRNA 0.38 9 7578055 7591818

Neighbor

gene id symbol gene type direction distance location
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding downstream 1778 7571201 ~ 7576277 (-)
acad8 acad8,LOC107582571 coding downstream 14461 7549827 ~ 7563594 (-)
lim2.3 lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599 coding downstream 201990 7372414 ~ 7376065 (-)
LOC113532840 LOC108277937 coding downstream 212912 7355180 ~ 7365143 (-)
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding downstream 294082 7276448 ~ 7283973 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding upstream 153481 7745299 ~ 7907858 (-)
LOC113532837 LOC108277602 coding upstream 530596 8122414 ~ 8137209 (-)
dixdc1a dixdc1 coding upstream 611844 8203662 ~ 8212072 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding upstream 899970 8491788 ~ 8498469 (-)
il4i1 il4i1 coding upstream 910876 8502694 ~ 8512202 (-)
LOC113532601 NA non-coding downstream 999 7576554 ~ 7577056 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding downstream 205735 7371370 ~ 7372320 (-)
G221844 NA non-coding downstream 357126 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 399759 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 453853 7122717 ~ 7124202 (-)
G222367 NA non-coding upstream 540545 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 570815 8162633 ~ 8162848 (-)
G222391 NA non-coding upstream 604987 8196805 ~ 8197207 (-)
G222522 NA non-coding upstream 649246 8241064 ~ 8242176 (-)
G222591 NA non-coding upstream 872758 8464576 ~ 8491284 (-)
zgc:77784 LOC108277423 other downstream 114556 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 924637 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1553702 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1774082 5797928 ~ 5803973 (-)
G220990 NA other downstream 1867164 5710098 ~ 5710891 (-)
sorl1 sorl1,LOC107717255 other upstream 813011 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1349200 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2085441 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 2716232 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 3116434 10708252 ~ 10721333 (-)

Expression


Co-expression Network