ywhag2 (ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655)


Basic Information

Item Value
gene id ywhag2
gene name ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5732735 ~ 5743421 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924970.2
GCTGAAGGGGCCCCGTCGGCACCGGCGCAGACGGCGAGGAACAGCTGCAGAGCGGTGCTCCTTCACCCAATTACAGTGacgagagaaaagagacagggaaaaaaaaactaaacaaaaaaacagtatatttaaaatttcactCATACCGTagattaaacaaaccaaaacttTAAACATGGTTGACCGTGAACAGCTGGTTCAAAAAGCTCGACTAGCTGAGCAGGCGGAGAGATATGATGATATGGCAGCAGCCATGAAATCGgTAACAGAGCTGAACGAAGCTTTGTCTAATGAGGAGAGAAACCTCCTTTCTGTGGCGTACAAGAACGTGGTAGGTGCGCGCCGCTCCTCCTGGAGGGTGATCTCTAGCATTGAGCAGAAGACCTCAGCTGACGGCAACGAAAAGAAGATTGAGATGGTGCGAGCCTACCGTGAGAAGATTGAGAAAGAGCTGGAGGCTGTGTGCCAAGATGTGCTCAGCCTGCTCGACAACTATCTGATCAAGAACTGCAGCGATGCACAGCATGAAAGCAAGGTGTTCTACCTGAAGATGAAGGGTGACTACTACCGCTACCTGGCAGAGGTGGCTACAGGCGAGAAGCGATCCACAGTGGTGGAGTCTTCCGAAAAGGCATACAATGAGGCGCATGAGATCAGCAAAGAACACATGCAGCCCACACACCCCATCCGCCTGGGCCTGGCACTCAACTACTCGGTTTTCTACTATGAGATCCAGAATGCACCAGAGCAGGCATGTCACCTGGCCAAGACAGCATTTGATGATGCCATCGCTGAGCTCGACACCCTCAACGAGGACTCCTACAAAGACTCCACGCTCATCATGCAGCTGCTCCGAGACAACTTGACACTGTGGACGAGCGATCAGCAGGATGACGAGGGCGGCGAGGGCAACAACTAAGTGGTAGCTCTTTCTCTGTGcagaaaaatgatttaagaaATATGGCTGGTGGACTTTGGCAAGCAGCTTTCGCCATGGTTTCCTCTGCAGCGgcagttctttatttttccatgaattcaaaaagaaaaaaaatattgaggGCAGTTAAAAAGGGGTGGGGGCTGAAGTCTTAGTTTGAggataaacagaaatatataatagCTGAAAGCGCCCTTGTCTCGGTTCTCTATGACGTTTGCCAAACCACTGAAAATGTCAGTCAATCAGCCAGGAAGGGGTCGTCGTTGGTTTGGAATTGCAGCCACGCACTGGCATATGGACTGATGTAGTtcaaagagataaagagatgtTGCTGATTTATGTTTCTGGGTAGTAGAAAAGCATTTGAAAAAGAGGGTgagctaaaaaacaaacaaacaaaaaccacttGAATTTACTGTCTGAAAAATAGCCTTAAATGGTTCCAGTTTTAGTCACAAAAAAGATTAACGTATATAAGGCAAATCTGTGAGTTTAGCAGCTGCAGTAAAATAAACATGGCATATTTAATCAGATTACTCTAATGTTTTGACCTCCAGAATAATCACATATAgagtaacaaaacaaaatattatggCCATCATAGTCCAATGTTACTGGAACCATAGGTTATTTTGAAAGGTCACATGTGATAAGAGGCAGacttaaaaaatagaaaataagaaaaatattgcaGCTTCAAAGTTTGTGGTTTACttctgtgtttaatttatttttgcacttgcCAACTATACTGTTTTGTCAGTGTAAGATAATGATACTATCAATGATTCAATATTGTGCATGCTGGTGATGTATTTATACAATAGCTTGACTTTATTAACTTATACCTTGGATGTTATGTATTCCTATGATTGAGAAGTAAAACATGCTTCATATTGATTACttcttatttatcttttttgatttgctaatttaaaaattgtgattGTTATGAATAAATTGATCTGTTATGGGCGTTGCTGTTGTGAcatgaaatatgttttatttctttagctAGACTGAAATTTGAAAAACACTATTGATCACTTAACTGTGCACGTGTTTTTCCTCACTAAACTATATCATGACATTGTTTAACAATGTTTCTGCTCTCAGCGATTTatgagtgctttttttttgtcatgttatgCACAATGCAACATGTATGGTTTGAGCTACAGTGGAGTATCAGAATCAGTGTTTCTGTGACACAATCAGAACATGGACCATAAATTGTATTTGGCagtattaattttttcattcatatatttatttttgtttccttttttaacttttagcTGTCTGGGTAACACTTATCTTGAATGTGAATAATTATGTAGCAGTTGCACAAGAGCCAAAATAAtgagacatgaaaaaaaagtaaataaataaagaaaaaaaagtgg

Function

symbol description
ywhag2 Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 56. Orthologous to human YWHAG (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma).

NR:

description
14-3-3 protein gamma-2

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K16198 YWHAG_H; 14-3-3 protein gamma/eta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924970.2 True 2346 mRNA 0.40 2 5732735 5743421

Neighbor

gene id symbol gene type direction distance location
LOC113532847 LOC108277604 coding downstream 110264 5621506 ~ 5622471 (-)
diabloa LOC108278350 coding downstream 123720 5606704 ~ 5609015 (-)
si:ch211-149e23.4 LOC108278242 coding downstream 183688 5536198 ~ 5549047 (-)
LOC113532491 dnhd1 coding downstream 244491 5451275 ~ 5488244 (-)
LOC113532789 flj13639,LOC108278219,LOC108433977,LOC103025652,LOC107725108,LOC107670134,LOC107669913 coding downstream 329417 5393818 ~ 5403318 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding upstream 25206 5768627 ~ 5772520 (-)
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding upstream 43592 5787013 ~ 5796975 (-)
synrg synrg coding upstream 195631 5939052 ~ 5975719 (-)
hnf1ba hnf1b coding upstream 245997 5989418 ~ 6003349 (-)
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding upstream 282042 6025463 ~ 6028603 (-)
G220884 NA non-coding downstream 228793 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 243727 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 277812 5454596 ~ 5454923 (-)
G220834 NA non-coding downstream 289033 5443492 ~ 5443702 (-)
G220826 NA non-coding downstream 315740 5416785 ~ 5416995 (-)
G221026 NA non-coding upstream 51707 5795128 ~ 5795453 (-)
G221068 NA non-coding upstream 126980 5870401 ~ 5870627 (-)
G221214 NA non-coding upstream 348492 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 459643 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 582670 6326091 ~ 6416808 (-)
G220990 NA other downstream 21844 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 133360 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 761216 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 1915900 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 1925621 3727377 ~ 3807114 (-)
LOC113532612 LOC108277970 other upstream 54507 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 277724 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 875751 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1648994 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2661408 8404829 ~ 8478912 (-)

Expression


Co-expression Network