odr4 (c17h1orf27)


Basic Information

Item Value
gene id odr4
gene name c17h1orf27
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17759657 ~ 17772060 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934598.2
CGTATCCCAAATGCCTCCTTCTTCCTATTAAAGCGCTTGACGTATACTGTAAAATAACGTCTTTTTACaccctaggtagtgcactaCTTTTTAACACAGTGGTATTTGTGGATTGAGCCACGTAGCTATAAGTGTTTAGTTCCCATTCTTCATTCATGTTGTCTAGAAAGTCAAGAAGCATATGATATATAATCAGTATGGGCAGAGGCTACATTGTTGAAGAGTGTGTGGAGAAGTACCTGACTAACCTGTCAGCAGCTGCTGGGTCATGTGAGACTGGACTTTTCATCGGCCAGtgttcAGCACAGAGGGACTTTGTGGTTCTGGCTGTGCGGACACCTCACAGAGAGACGGAGGGAGCCACAGAGAGCCAGAGAACGCCAATCTTACTGGACAACATTGATGTGGAGTGGGTTGCCGAGCATGCCAGACAGGTTTCTCGGATGCTCCCTGGCGGCGTGAGCGTTCTCGGGTTGTTTCTCATCGCCCCACCTGAGGTGTCAAAAGAAGTGCAGAACACGCTGAAAAAGCTTGTCTTTGCTGTGGATAAATCCATATCCAAAAGCAAGCTGTGGGATCCGTCAGAGGATGATGTGACTGAGCGCATCACCCTGCACATCTGTTCCAAAACAAGGAAAGCTGTCTGCAAAACATTTGATGTTAAAGATCCAAAGTGTTCAGCGAAGCCTGCAGATTGGAAGTATCAGAGTGGCATCTCATCTTCGTGGCCTCTGATCACCTGCAATGTGCAGCTCGACTTGCAGATCCCGGTCACATCAGAAAATGTCGACAAGTTCATAAAGGATGGACTGAGGAACTGGGCTAAACAGATCGAGTCTGCACTCTGTCTCATAAACGGCAAAGCTGTAACAGATGACTCCGAGCTACTATCAGGGCcgAAAAAGAGCACGAAGGCGAGCCAGCAGCAGACAGTTCGAGCGCAGATCCTCGTCTCAGCAGATGATGCAGATGCAGGCCAGGTGTCCAGTGCTGTGGTGAAGGAGTGCAGTGGCTCGGTGTGTCTGAGAGGAGTAGTTCACTGCAGAGCTTACATTCACACCAACAAACCTAAAACCAGACACGCCGCACAGGCACTCAAAAGGGATGTAGTGAACACGGTTTTCAGCCGAGTGGAGATGCTTCTGGAGGATCTGCTCATGAATGAAGCAgCAGATCTGGCGTCTGGGGAGCAGGTTCTTCCACGGCGTGTGTTTGCCCCCATATCCGGCTCtggcttgagtgtgtgtgactacATTTTCCCAGATGAGAGCACTGCGGATGTGGCTGAGCGGTTTAAAGAAATGCTAGGTTGTGACTTACCAGAAGAGGACGTGGACACCAGCATGGAGGCTCAGAcatgttaCTCTGTTTCGGGAGTGGAAGATGGGTGTGATGAAGAAGCCAATCACAATGTGCCTACACAATCCGGCGCTGAAACTGTGCCAAAAACTAAAGCAGCAAGACAATATGCAGCAGGCATGGCGGTGGCAGCTGCGGTTGCCCTCTTGGCCACAGCAACCTCTCTACTCTATCTTACTGAGTAACAGCAAGACCACAGTTGTTTATAACTTCATCAGAAATTAATAAACTATAGAAAATta
>XM_026934599.2
GTATCCCAAATGCCTCCTTCTTCCTATTAAAGCGCTTGACGTATACTGTAAAATAACGTCTTTTTACaccctaggtagtgcactaCTTTTTAACACAGTGGTATTTGTGGATTGAGCCACGTAGCTATAAGTGTTTAGTTCCCATTCTTCATTCATGTTGTCTAGAAAGTCAAGAAGCATATGATATATAATCAGTATGGGCAGAGGCTACATTGTTGAAGAGTGTGTGGAGAAGTACCTGACTAACCTGTCAGCAGCTGCTGGGTCATGTGAGACTGGACTTTTCATCGGCCAGtgttcAGCACAGAGGGACTTTGTGGTTCTGGCTGTGCGGACACCTCACAGAGAGACGGAGGGAGCCACAGAGAGCCAGAGAACGCCAATCTTACTGGACAACATTGATGTGGAGTGGGTTGCCGAGCATGCCAGACAGGTTTCTCGGATGCTCCCTGGCGGCGTGAGCGTTCTCGGGTTGTTTCTCATCGCCCCACCTGAGGTGTCAAAAGAAGTGCAGAACACGCTGAAAAAGCTTGTCTTTGCTGTGGATAAATCCATATCCAAAAGCAAGCTGTGGGATCCGTCAGAGGATGATGTGACTGAGCGCATCACCCTGCACATCTGTTCCAAAACAAGGAAAGCTGTCTGCAAAACATTTGATGTTAAAGATCCAAAGTGTTCAGCGAAGCCTGCAGATTGGAAGTATCAGAGTGGCATCTCATCTTCGTGGCCTCTGATCACCTGCAATGTGCAGCTCGACTTGCAGATCCCGGTCACATCAGAAAATGTCGACAAGTTCATAAAGGATGGACTGAGGAACTGGGCTAAACAGATCGAGTCTGCACTCTGTCTCATAAACGGCAAAGCTGTAACAGATGACTCCGAGCTACTATCAGGGCcgAAAAAGAGCACGAAGGCGAGCCAGCAGCAGACAGTTCGAGCGCAGATCCTCGTCTCAGCAGATGATGCAGATGCAGGCCAGGTGTCCAGTGCTGTGGTGAAGGAGTGCAGTGGCTCGGTGTGTCTGAGAGGAGTAGTTCACTGCAGAGCTTACATTCACACCAACAAACCTAAAACCAGACACGCCGCACAGGCACTCAAAAGGGATGTAGTGAACACGGTTTTCAGCCGAGTGGAGATGCTTCTGGAGGATCTGCTCATGAATGAAGCAgATCTGGCGTCTGGGGAGCAGGTTCTTCCACGGCGTGTGTTTGCCCCCATATCCGGCTCtggcttgagtgtgtgtgactacATTTTCCCAGATGAGAGCACTGCGGATGTGGCTGAGCGGTTTAAAGAAATGCTAGGTTGTGACTTACCAGAAGAGGACGTGGACACCAGCATGGAGGCTCAGAcatgttaCTCTGTTTCGGGAGTGGAAGATGGGTGTGATGAAGAAGCCAATCACAATGTGCCTACACAATCCGGCGCTGAAACTGTGCCAAAAACTAAAGCAGCAAGACAATATGCAGCAGGCATGGCGGTGGCAGCTGCGGTTGCCCTCTTGGCCACAGCAACCTCTCTACTCTATCTTACTGAGTAACAGCAAGACCACAGTTGTTTATAACTTCATCAGAAATTAATAAACTATAGAAAATta
>XM_026934600.2
CGTATCCCAAATGCCTCCTTCTTCCTATTAAAGCGCTTGACGTATACTGTAAAATAACGTCTTTTTACaccctaggtagtgcactaCTTTTTAACACAGTGGTATTTGTGGATTGAGCCACGTAGCTATAAGTGTTTAGTTCCCATTCTTCATTCATGTTGTCTAGAAAGTCAAGAAGCATATGATATATAATCAGTATGGGCAGAGGCTACATTGTTGAAGAGTGTGTGGAGAAGTACCTGACTAACCTGTCAGCAGCTGCTGGGTCATGTGAGACTGGACTTTTCATCGGCCAGtgttcAGCACAGAGGGACTTTGTGGTTCTGGCTGTGCGGACACCTCACAGAGAGACGGAGGGAGCCACAGAGAGCCAGAGAACGCCAATCTTACTGGACAACATTGATGTGGAGTGGGTTGCCGAGCATGCCAGACAGGTTTCTCGGATGCTCCCTGGCGGCGTGAGCGTTCTCGGGTTGTTTCTCATCGCCCCACCTGAGGTGTCAAAAGAAGTGCAGAACACGCTGAAAAAGCTTGTCTTTGCTGTGGATAAATCCATATCCAAAAGCAAGCTGTGGGATCCGTCAGAGGATGATGTGACTGAGCGCATCACCCTGCACATCTGTTCCAAAACAAGGAAAGCTGTCTGCAAAACATTTGATGTTAAAGATCCAAAGTGTTCAGCGAAGCCTGCAGATTGGAAGTATCAGAGTGGCATCTCATCTTCGTGGCCTCTGATCACCTGCAATGTGCAGCTCGACTTGCAGATCCCGGTCACATCAGAAAATGTCGACAAGTTCATAAAGGATGGACTGAGGAACTGGGCTAAACAGATCGAGTCTGCACTCTGTCTCATAAACGGCAAAGCTGTAACAGATGACTCCGAGCTACTATCAGGGCcgAAAAAGAGCACGAAGGCGAGCCAGCAGCAGACAGTTCGAGCGCAGATCCTCGTCTCAGCAGATGATGCAGATGCAGGCCAGGTGTCCAGTGCTGTGGTGAAGGAGTGCAGTGGCTCGGTGTGTCTGAGAGGAGTAGTTCACTGCAGAGCTTACATTCACACCAACAAACCTAAAACCAGACACGCCGCACAGGCACTCAAAAGGGATGTAGTGAACACGGTTTTCAGCCGAGTGGAGATGCTTCTGGAGGATCTGCTCATGAATGAAGCAgCAGATCTGGCGTCTGGGGAGCAGGTTCTTCCACGGCGTGTGTTTGCCCCCATATCCGGCTCtggcttgagtgtgtgtgactacATTTTCCCAGATGAGAGCACTGCGGATGTGGCTGAGCGGTTTAAAGAAATGCTAGGTTGTGACTTACCAGAAGAGGACGTGGACACCAGCATGGAGGCTCAGAcatgttaCTCTGTTTCGGGAGTGGAAGATGGGTGTGATGAAGAAGCCAATCACAATGTGCCTACACAATCCGGCGCTGAAACTGTGCCAAAAACTAAAGCAGCAAGACAATATGCAGGCATGGCGGTGGCAGCTGCGGTTGCCCTCTTGGCCACAGCAACCTCTCTACTCTATCTTACTGAGTAACAGCAAGACCACAGTTGTTTATAACTTCATCAGAAATTAATAAACTATAGAAAATta

Function

NR:

description
protein odr-4 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934598.2 True 1601 mRNA 0.49 14 17759657 17772060
XM_026934599.2 False 1597 mRNA 0.49 14 17759657 17772059
XM_026934600.2 False 1598 mRNA 0.49 14 17759657 17772060

Neighbor

gene id symbol gene type direction distance location
pla2g4aa pla2g4a,LOC107722605,LOC107693742,LOC107718137,LOC107677770,LOC107594671 coding downstream 50038 17694739 ~ 17709619 (-)
arpc5a arpc5b,arpc5,arpc5a,LOC108277766,LOC108431159,LOC103032016,LOC107599090,LOC107698380 coding downstream 68303 17685877 ~ 17691354 (-)
niban1b fam129a coding downstream 84993 17645397 ~ 17674664 (-)
dhx16 dhx16,LOC107704755 coding downstream 139765 17600050 ~ 17619892 (-)
rnf183 LOC108277924 coding downstream 160218 17594191 ~ 17599439 (-)
prg4a NA coding upstream 28024 17800084 ~ 17808962 (-)
rxrga rxrga,LOC108278312,LOC108431152,LOC107718143,LOC107677771,LOC107589872,LOC106599103 coding upstream 40858 17812918 ~ 17823904 (-)
olfml2bb LOC108277438 coding upstream 106138 17878198 ~ 17888752 (-)
agla agl,agla,LOC108441576 coding upstream 156294 17928354 ~ 17961448 (-)
si:ch211-153l6.6 LOC108277520 coding upstream 190930 17962990 ~ 17972925 (-)
G227786 NA non-coding downstream 270225 17486631 ~ 17489432 (-)
G227755 NA non-coding downstream 352432 17405948 ~ 17407225 (-)
G227640 NA non-coding downstream 451933 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding downstream 454295 17302063 ~ 17305362 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding downstream 596072 17161511 ~ 17163585 (-)
G228131 NA non-coding upstream 302536 18074596 ~ 18074799 (-)
G228188 NA non-coding upstream 645394 18417454 ~ 18418564 (-)
G228483 NA non-coding upstream 833867 18605927 ~ 18608241 (-)
G228564 NA non-coding upstream 1239364 19011424 ~ 19012679 (-)
G228635 NA non-coding upstream 1576579 19348639 ~ 19348839 (-)
psenen psenen other downstream 321043 17434055 ~ 17438614 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 509503 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 1395321 16354664 ~ 16364336 (-)
G227205 NA other downstream 1442312 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 1594621 16119297 ~ 16165036 (-)
rwdd3 rwdd3 other upstream 616448 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 789362 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 1799613 19571673 ~ 19572614 (-)
G228758 NA other upstream 1936255 19708315 ~ 19708841 (-)
gdpd5b LOC108277648,LOC108433002,LOC103039705 other upstream 3979075 21751135 ~ 21811084 (-)

Expression


Co-expression Network