arl4aa (arl4a)


Basic Information

Item Value
gene id arl4aa
gene name arl4a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17106590 ~ 17109061 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934618.2
CGGTGCTAACTGCCCCAGCTCAGTGTGTACGtgagcgcgcgcgcgtgtgtgtgaagCGTCGCTGCGCAGTGGAGTTTGTCCGAGCGGctgtgatgaaataaaaagggggaaaaaaaaagtttggtaaACAGTAAAGTCCGAGTGAACCTTTGGGAGTAAAACCAGAAGTTCAGTTATGGATCTTTACTTTTGCCTTCTCTTAATCTGACTCCACACCACATGAAAATGGGAAACAGGATATCTGATCAATCCAGTATATTTTCTAATCTTCCTTTCTGGAAGTCTCTGCACATTACTATTTTGGGTCTGGACTCTGCAGGCAAAACCACTGTCCTGTACAGACTGCAGTTTAATGAGTTTGTGAACACGGTGCCTACTAAAGGATTTAATGCAGAGAAGGTCAAGGTGGCCCTCGGCCGCTCTGGGACGGTGACCTTTCACTTTTGGGATGTTGGTGGCCAGGAGAAGCTGCGTCCGCTCTGGAAGTCCTACACTCGCTGCACTGATGGCGTCGTGTTTGTGGTCGACTCGGTGGATGCTGAGCGGATGGACGAGGCCAGAACTGAACTTCACAAGCTTGCACACTCGATGGAGAGTCAAGGTGTTCCCATGCTTATTATAGCAAATAAGCAGGACCTGAGGAACTCTATGACCCTGGCAGAAATTGAGAAGATGCTGGCGCTGAGTGAACTCGGTGCCTCTACGCCATGGCACTTGCAGCCTTCGTGTGCTATAATCGGCGATGGTTTATTAGAAGGACTTGAAAGACTATATGACATGATCCTCAAACAGAGGAAGAAGTTAAAGCAGCAGAAAAAGAAGTGATGGGAAATGTTCAGAACGAGAAAGCAATAGAAATTGGTTTAAACAGTGATCATGTGGAATGGCCCTCATTTGACCATGGTATTTATCAGCTGACTGAGTTTCATCAGTTTCATagtctaatgttttttttttttttttctaatcttctttttttttagttaaagcCCATGGCTTTAAAGAGATCTTTATTAGACCGTGAGTGGAGAATGGAAGAGACAGTTTTAAAATACTGTGCAGGCTGAACGTTTATTACTTGAAGTGTGTTGAAGGAACATGGATGAAGGAAGTATGAGTGTTGGGTGTGTGCTAGTCGTGAGAAGTGTACGTGTCATTTTTCAGGTTAATGTAGGGACCGAGAACATGGACATCAATTACTTCTAGGATTAACCATCAGCGATTCAGattttaatttactgtatttttatctttgaaagtgGGTCTATAACACTGAACCCcgtttattttcatgtgtggttggggttttctttttttcttttggagaAGAaactttttgtctttctctaactttttttgtattgtttacaAGCACTTTAGATGCCATACTTACTTTATGTAAATGTCTGAATATTTAGTGACTATTTTattaagctaaataaatattccTATTGTAAAAACGTCA

Function

symbol description
arl4a Enables GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to act upstream of or within brown fat cell differentiation. Located in cytosol; nuclear lumen; and plasma membrane.

NR:

description
ADP-ribosylation factor-like protein 4A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934618.2 True 1465 mRNA 0.42 2 17106590 17109061

Neighbor

gene id symbol gene type direction distance location
LOC113539389 lrrc72 coding downstream 227849 16865182 ~ 16878741 (-)
tspan13a tspan13 coding downstream 249071 16853179 ~ 16857519 (-)
crybb1l3 LOC108426910,LOC103042748,LOC106924296,LOC104922853 coding downstream 581948 16520890 ~ 16524642 (-)
unc119a unc119,LOC103043060,LOC108431312,LOC107704800,LOC107757471,LOC107548572 coding downstream 588039 16501564 ~ 16518551 (-)
slc46a1 slc46a1 coding downstream 626943 16474935 ~ 16479647 (-)
si:dkey-30e9.6 NA coding upstream 462 17109523 ~ 17113260 (-)
LOC113539219 LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding upstream 33284 17142345 ~ 17145261 (-)
tmem106ba tmem106b,LOC107730846,LOC107683194 coding upstream 37874 17146935 ~ 17155966 (-)
LOC113539359 LOC108277878 coding upstream 153515 17262576 ~ 17275219 (-)
LOC113539358 LOC108277878 coding upstream 166867 17275928 ~ 17282313 (-)
G227440 NA non-coding downstream 193430 16912959 ~ 16913160 (-)
G227405 NA non-coding downstream 331515 16774853 ~ 16775075 (-)
LOC117599111 NA non-coding downstream 383398 16717249 ~ 16723192 (-)
G227319 NA non-coding downstream 462505 16643860 ~ 16644085 (-)
G227296 NA non-coding downstream 532398 16573956 ~ 16574192 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding upstream 52450 17161511 ~ 17163585 (-)
G227640 NA non-coding upstream 177282 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding upstream 193002 17302063 ~ 17305362 (-)
G227755 NA non-coding upstream 296887 17405948 ~ 17407225 (-)
G227786 NA non-coding upstream 377570 17486631 ~ 17489432 (-)
si:dkey-118k5.3 LOC108277747 other downstream 742254 16354664 ~ 16364336 (-)
G227205 NA other downstream 789245 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 941554 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 1261807 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 1705813 15365359 ~ 15400777 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 121695 17230756 ~ 17250154 (-)
psenen psenen other upstream 324994 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1279447 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1452361 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 2462612 19571673 ~ 19572614 (-)

Expression


Co-expression Network