palmda (LOC108277529)


Basic Information

Item Value
gene id palmda
gene name LOC108277529
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17975631 ~ 17985549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934749.2
CCTGCGCGCGCCGTtaaagtagcagtagtagcagtctGAGCCTATTCCCTTCAGAAGACccgAGCCACAATGGAAGAGGCAGAACTGTTAAAGGAGAGACTTCAAGCCATTACAAAAAAACGAAAAATCCAGGAGGACATTGTCTCAAAGCGGCTGGAGATCGACAAGGAAAAACTTAAACTTCAGCAACTGAAGAAAAAATCTGCAAGAGATCTATGGCTTATGGGTGGCACGAGTGCTGGAGCGGCCCAGAAGGAGCAGAAAGCTCAGGATGTCACCCAGCAGACCAAAGCACTACAGGCTAACATTCATCTGATAGAGAAAGAAATTGAGGCTCTGGAGAGGGAAGAGCTCAACATCTCCACAAATGAAGGCCTCATCCTGAACAGGCTGAAAGCCATTGAGAAGTCCACAGAGGACATTATTAAGGCAGCAAATGAAAATTTCAAGTCAGAACCTGTCCATGTTTATTCAGGAATTCCAGATACTCAAAAATCTTTAAACATGAGGAAACAGCCAACTGTGGATCAAGGAACCAAAATTGACCAACAGAAACCTGCTTTGTTTGCAATGGAGATCAATGTGCAGAAGGACCTGCGCACCGGTGAGAGCCGCGTCGTCTCCACCAGCACAGTCCCGGCCCAGGAATTACAGCAGCGCGGCATCAAGGTGTACGATGACGGCCGTAAGTCTGTGTACGCTTTGCATACTGCCTTGGAACAGCCTGAAGCCAATGGAGTGGATGAGCTCAGTCCTAAGGAGGTGGAGGAGCTCCTCAAACAGGCCacagagaaaaggaagaagccTCAAGAGCAAAATGAGCCTCTGTGTATCAAGAACTACCAGAATAGCCACTGCTCAGAGATTTGTAATATGGATATGAGTGAATGGCCAGAGCTAGAGTACAGTCACAGTAACCTACACTATCCCTACCAGGAAATTCATGAACCTGCTCACATGTTCCATCATTACAGTGACCAACATGAGTATTATCACAACAGCAATGGCAACAGCTATGAGATATATGGAGGGGAAACAAGAAGTGACCCAAAGCACTTTTACGACCCCCGAGAGAGACACAGAAGAACTCCAAGTCAGCATGTGGACTCTGTTGTGAATCAAGTACCTCCTTTGTCCTACAGAGAGAACCCTAAACTCAGCATCCTAAACACTTTGCCTTCAGATGAACCTGTCTCTATGATCTTCATGGGATATCAGAAAGCTGAGGAAGATGCACAGAGCTATGAAGGCTCCATTCAGGCAGAGCTCGTCATCATCGGAGACGGTGAAGAAGAAGCCTTAACCAGTGACACTCCTTTCCAAAAAAGACACGTCCATTCTCTCCAGAACCTCAATACCAACAATGCGTCCACACACTTGGCCTCTGAGACGTCGTCTCCAGCTTCCCTGTACAGCCAAACGGTGTAGCAAGTGGCAGATGATGGAACTCGGCTCAAAGGCTTCACGGAGGAAACTGAAGATTGCTGACTACAAAATCAAAAAGACTCACCTCGCAAGAACTTTAGGTATCCAGTTGGAGTGAAAGAAGCAAGAACGTCTGACTGGATTTGCATAGGGATAAGAGTCTCGCTTTGAGTCTGAGAGGTCATCGATTCAAATCTCAGCCCTTCTTTCTTATGAACCATGATATAATTCAGATTTATTCCTGTCAGCAGCATGTCATTAGCAAATTTAATGTGAAAATTGATTAAATGTATAATGGACTCAAAAAGCCCAAAATAATTAAGTTAGTAAAGATACATAATTGCTTCAAACCGCCACATAACCGCAGTCTTATTATAATCAGAATGTCAATAATATACTCATCATTTCCTAAGGCGGTTATGCTGTGTACCCAAAAATAATCTTGCTGCAATGTTCTGATGTTCTAATGgcaataatctaataataatctttttctctcacagagTTCTTGGCTGTCACTTACATAACATTCCCCAAATAGACAAAAGCTAACATTACATTTGTGTTAATCGTTCCTGCAAACAATAATATTGCGGCAGCACTGGAACCATAATATTTTAGCTaatctaaaatgattttgtgCAGGTGCCACCCTCCTGGAACAAGAAGCTGTCATGTAACTGGTGTGACCTAGCTAGTGTTTGGGAATTGGACCTAAATAAATTAGGAGAAAAAACAcgtaaatatattaaaaatgtggtGATGTAGTGGGTCGCGTTGTTGCCTCacggctccagggtcccaggttcgatcctgaactcggattactgtctgtgtggagtttcatatgttcttcCCCTGTCCATATGAATTTCTTCAAGGTTCTCTAGTTTCATCCCaccttgttaaaaaaacatgccagtaggtggactggctattctaaattgcctcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtctatggtgccctgtgatgg
>XM_034310487.1
GAGGAAGAGAGTAGCATGAGATTTCCTAACAGATCTTCAATTGATCCAGATCGCTTTCAGCTCACAAAAGCCACAATGGAAGAGGCAGAACTGTTAAAGGAGAGACTTCAAGCCATTACAAAAAAACGAAAAATCCAGGAGGACATTGTCTCAAAGCGGCTGGAGATCGACAAGGAAAAACTTAAACTTCAGCAACTGAAGAAAAAATCTGCAAGAGATCTATGGCTTATGGGTGGCACGAGTGCTGGAGCGGCCCAGAAGGAGCAGAAAGCTCAGGATGTCACCCAGCAGACCAAAGCACTACAGGCTAACATTCATCTGATAGAGAAAGAAATTGAGGCTCTGGAGAGGGAAGAGCTCAACATCTCCACAAATGAAGGCCTCATCCTGAACAGGCTGAAAGCCATTGAGAAGTCCACAGAGGACATTATTAAGGCAGCAAATGAAAATTTCAAGTCAGAACCTGTCCATGTTTATTCAGGAATTCCAGATACTCAAAAATCTTTAAACATGAGGAAACAGCCAACTGTGGATCAAGGAACCAAAATTGACCAACAGAAACCTGCTTTGTTTGCAATGGAGATCAATGTGCAGAAGGACCTGCGCACCGGTGAGAGCCGCGTCGTCTCCACCAGCACAGTCCCGGCCCAGGAATTACAGCAGCGCGGCATCAAGGTGTACGATGACGGCCGTAAGTCTGTGTACGCTTTGCATACTGCCTTGGAACAGCCTGAAGCCAATGGAGTGGATGAGCTCAGTCCTAAGGAGGTGGAGGAGCTCCTCAAACAGGCCacagagaaaaggaagaagccTCAAGAGCAAAATGAGCCTCTGTGTATCAAGAACTACCAGAATAGCCACTGCTCAGAGATTTGTAATATGGATATGAGTGAATGGCCAGAGCTAGAGTACAGTCACAGTAACCTACACTATCCCTACCAGGAAATTCATGAACCTGCTCACATGTTCCATCATTACAGTGACCAACATGAGTATTATCACAACAGCAATGGCAACAGCTATGAGATATATGGAGGGGAAACAAGAAGTGACCCAAAGCACTTTTACGACCCCCGAGAGAGACACAGAAGAACTCCAAGTCAGCATGTGGACTCTGTTGTGAATCAAGTACCTCCTTTGTCCTACAGAGAGAACCCTAAACTCAGCATCCTAAACACTTTGCCTTCAGATGAACCTGTCTCTATGATCTTCATGGGATATCAGAAAGCTGAGGAAGATGCACAGAGCTATGAAGGCTCCATTCAGGCAGAGCTCGTCATCATCGGAGACGGTGAAGAAGAAGCCTTAACCAGTGACACTCCTTTCCAAAAAAGACACGTCCATTCTCTCCAGAACCTCAATACCAACAATGCGTCCACACACTTGGCCTCTGAGACGTCGTCTCCAGCTTCCCTGTACAGCCAAACGGTGTAGCAAGTGGCAGATGATGGAACTCGGCTCAAAGGCTTCACGGAGGAAACTGAAGATTGCTGACTACAAAATCAAAAAGACTCACCTCGCAAGAACTTTAGGTATCCAGTTGGAGTGAAAGAAGCAAGAACGTCTGACTGGATTTGCATAGGGATAAGAGTCTCGCTTTGAGTCTGAGAGGTCATCGATTCAAATCTCAGCCCTTCTTTCTTATGAACCATGATATAATTCAGATTTATTCCTGTCAGCAGCATGTCATTAGCAAATTTAATGTGAAAATTGATTAAATGTATAATGGACTCAAAAAGCCCAAAATAATTAAGTTAGTAAAGATACATAATTGCTTCAAACCGCCACATAACCGCAGTCTTATTATAATCAGAATGTCAATAATATACTCATCATTTCCTAAGGCGGTTATGCTGTGTACCCAAAAATAATCTTGCTGCAATGTTCTGATGTTCTAATGgcaataatctaataataatctttttctctcacagagTTCTTGGCTGTCACTTACATAACATTCCCCAAATAGACAAAAGCTAACATTACATTTGTGTTAATCGTTCCTGCAAACAATAATATTGCGGCAGCACTGGAACCATAATATTTTAGCTaatctaaaatgattttgtgCAGGTGCCACCCTCCTGGAACAAGAAGCTGTCATGTAACTGGTGTGACCTAGCTAGTGTTTGGGAATTGGACCTAAATAAATTAGGAGAAAAAACAcgtaaatatattaaaaatgtggtGATGTAGTGGGTCGCGTTGTTGCCTCacggctccagggtcccaggttcgatcctgaactcggattactgtctgtgtggagtttcatatgttcttcCCCTGTCCATATGAATTTCTTCAAGGTTCTCTAGTTTCATCCCaccttgttaaaaaaacatgccagtaggtggactggctattctaaattgcctcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtctatggtgccctgtgatgg

Function

NR:

description
palmdelphin-like

GO: NA

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934749.2 False 2425 mRNA 0.44 9 17975631 17985549
XM_034310487.1 True 2431 mRNA 0.44 9 17975631 17982238

Neighbor

gene id symbol gene type direction distance location
si:ch211-153l6.6 LOC108277520 coding downstream 2706 17962990 ~ 17972925 (-)
agla agl,agla,LOC108441576 coding downstream 14183 17928354 ~ 17961448 (-)
olfml2bb LOC108277438 coding downstream 86879 17878198 ~ 17888752 (-)
rxrga rxrga,LOC108278312,LOC108431152,LOC107718143,LOC107677771,LOC107589872,LOC106599103 coding downstream 151727 17812918 ~ 17823904 (-)
prg4a NA coding downstream 166669 17800084 ~ 17808962 (-)
plppr4a plppr4a,LOC108277514,LOC107718168,LOC108441573,LOC107693752 coding upstream 20895 18006444 ~ 18034974 (-)
ptbp2b ptbp2b,ptbp2,LOC108277987,LOC103030091,LOC108442283,LOC107570490 coding upstream 338991 18324540 ~ 18345891 (-)
LOC113539254 hccsa.1,LOC108278403,LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding upstream 407618 18393167 ~ 18400086 (-)
LOC113539356 LOC108277622,LOC108442280 coding upstream 417178 18402727 ~ 18422483 (-)
LOC113539090 LOC108278112,LOC108440474 coding upstream 665547 18651096 ~ 18872252 (-)
G227786 NA non-coding downstream 486199 17486631 ~ 17489432 (-)
G227755 NA non-coding downstream 568406 17405948 ~ 17407225 (-)
G227640 NA non-coding downstream 667907 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding downstream 670269 17302063 ~ 17305362 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding downstream 812046 17161511 ~ 17163585 (-)
G228131 NA non-coding upstream 89047 18074596 ~ 18074799 (-)
G228188 NA non-coding upstream 431905 18417454 ~ 18418564 (-)
G228483 NA non-coding upstream 620378 18605927 ~ 18608241 (-)
G228564 NA non-coding upstream 1025875 19011424 ~ 19012679 (-)
G228635 NA non-coding upstream 1363090 19348639 ~ 19348839 (-)
psenen psenen other downstream 537017 17434055 ~ 17438614 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 725477 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 1611295 16354664 ~ 16364336 (-)
G227205 NA other downstream 1658286 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 1810595 16119297 ~ 16165036 (-)
rwdd3 rwdd3 other upstream 402959 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 575873 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 1586124 19571673 ~ 19572614 (-)
G228758 NA other upstream 1722766 19708315 ~ 19708841 (-)
gdpd5b LOC108277648,LOC108433002,LOC103039705 other upstream 3765586 21751135 ~ 21811084 (-)

Expression


Co-expression Network