LOC113539219 (LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297)


Basic Information

Item Value
gene id LOC113539219
gene name LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17142345 ~ 17145261 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934866.2
TCTTTCCCAAGATAATTTCAGTACAgggattattattaaaacatgagCAGCATCAGAGTGACTTTATGAGAGTCACTTTCTGTGACAGTACGCTCATCTTACATGCagatcattttttgttttgtttgggaGAAAGAAATACATCCACTCTGGTCTGAAAACATCAAGTTGTACTCGTCTTGAGGAGGGGGATCATTTGGCGCACATCTGGAAAAACCATTTCCTTACATCTGGGAATGTGATTTTTTCCAAATAGACCATGAAAATTTCATGAGAGCTTTGTAACCATGTTTGTGGACTAAAGCTCATGGAGATATTGTtagtgtatatatgagtggagAATGTCAGTGgcatttaattatgtttttatatacagatcATTAGTACAATTtgatatgtttaatgttttaatttgtgATGAAATACTtatctgtaaaaataaagaCCCAACACCATACTGacacatatttttaaagtttagGAACCAGACTGGTGTAAATGAAATTTGGGGGGAAAAGTCATATCAAATAAAAGCTCATTAGAAGATCTATCACTGTCAAATACAAACCTTTATCAAAACTCAAAACTGTCATGTACGCTTATGTAATATATAGAGATCACACTctccacacttttttttgtcctagTCCTTCCTCTCCATGGTTCAGTGtcattcctcctctctcctgcAGGTGTGCTGTAGAGCAGGGTGGCACATCCAGAGAGCTGGACACCATTCCCGGACCCTCACTCTTGCCtgttccttgtgtgtgtgagtgtttgtggaTACAAGAATGGCAGGGTTTAATCAGTCATCTTCACTGCTCTGGACTTACCTCTGTGTGGCCATGCTGGCTCTTCTGGCTGGTGTGTGTCTGGGAGGATCTGATTCACCCCGTGGCGTCTCCTTACCTTTTGTGTTCGACCTGAAAGCAGTGTGTGATCCACCATGCAGACATGCTGGGATCTGTATCCGAAACAACACCTGCTTGTGCTCACGGGGCTACGAAGGAGAGACCTGCCAGTATGCTAACTGCGAGCCAAAGTGTAAAAACGGGGGTGAATGTCTCCGACCTGGAAAGTGCAGATGTCCTCCAGGACTTGGTGGAAAATATTGTGAAAAAGTTGCATGTGATGGTGGCTGCTGGAATGGTGGAGAATGCGTTGCAGTGAACGGGCAGGCCAAGTGCATCTGTCCCTCCAGCTGGACTGGATCCAAATGTCAAGAAGCAATCTGTCCTCAGGGTTGCCAGAATGGAGGCAGCTGTGTGGCTCCAGGAATCTGCAGCTGTCCAGAGGGATGGCTGGGGGGAGCCTGTCACATCGCTGTGTGTAAGAAGCCGTGTCTGAATGGTGGGAAATGCGTGTCTCCAGACAAATGTCGCTGTCGCACTCCGTTCTCCGGCCCTCAGTGCGAGGACAGAAAAAAACTCTTCTGATCTCAGCACTTACACTCCCTCAGAGCTGGAGACTTGGCCAACATGGTGCTATTCATTTAAGTTTGTTCATTCACTTGtactttttacatttgtaaacaaattTGTTACATTATGTTATATGTATGCTGTGTGATTTtatgacattaaataaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934866.2 True 1592 mRNA 0.43 5 17142345 17145261

Neighbor

gene id symbol gene type direction distance location
si:dkey-30e9.6 NA coding downstream 29085 17109523 ~ 17113260 (-)
arl4aa arl4a coding downstream 33284 17106590 ~ 17109061 (-)
LOC113539389 lrrc72 coding downstream 263604 16865182 ~ 16878741 (-)
tspan13a tspan13 coding downstream 284826 16853179 ~ 16857519 (-)
crybb1l3 LOC108426910,LOC103042748,LOC106924296,LOC104922853 coding downstream 617703 16520890 ~ 16524642 (-)
tmem106ba tmem106b,LOC107730846,LOC107683194 coding upstream 1674 17146935 ~ 17155966 (-)
LOC113539359 LOC108277878 coding upstream 117315 17262576 ~ 17275219 (-)
LOC113539358 LOC108277878 coding upstream 130667 17275928 ~ 17282313 (-)
LOC117599112 NA coding upstream 153958 17299219 ~ 17299613 (-)
LOC113539084 NA coding upstream 172093 17317354 ~ 17326799 (-)
G227440 NA non-coding downstream 229185 16912959 ~ 16913160 (-)
G227405 NA non-coding downstream 367270 16774853 ~ 16775075 (-)
LOC117599111 NA non-coding downstream 419153 16717249 ~ 16723192 (-)
G227319 NA non-coding downstream 498260 16643860 ~ 16644085 (-)
G227296 NA non-coding downstream 568153 16573956 ~ 16574192 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding upstream 16250 17161511 ~ 17163585 (-)
G227640 NA non-coding upstream 141082 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding upstream 156802 17302063 ~ 17305362 (-)
G227755 NA non-coding upstream 260687 17405948 ~ 17407225 (-)
G227786 NA non-coding upstream 341370 17486631 ~ 17489432 (-)
si:dkey-118k5.3 LOC108277747 other downstream 778009 16354664 ~ 16364336 (-)
G227205 NA other downstream 825000 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 977309 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 1297562 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 1741568 15365359 ~ 15400777 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 85495 17230756 ~ 17250154 (-)
psenen psenen other upstream 288794 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1243247 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1416161 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 2426412 19571673 ~ 19572614 (-)

Expression


Co-expression Network