ap2s1 (ap2s1)


Basic Information

Item Value
gene id ap2s1
gene name ap2s1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16108511 ~ 16116831 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934876.2
CTCAGCTTCTTCAGGCCTCTAGCGTCCTATGTAGGGGAAATAACAGGTTAGCGGCACGAAAGGCCAGCCCATTGGAGGTCTTCCTCTTCAGACTAAATTTTTTATGTGCAGAGATACAGAAAGGTTGATTAAGTAGCTTTATTTAGCTAAATTTGAATACCGGAAATATCAAAAATGATTCGCTTCATTCTGATCCAAAACCGAGCAGGAAAAACCAGACTGGCCAAATGGTACATgcagtttgatgatgatgagaagCAGAAGCTCATTGAGGAGGTTCATGCTGTAGTGACTGTCCGAGATGCCAAACACACTAACTTTGTAGAGTTCAGGAACTTCAAGATTATCTACAGACGCTATGCTGgtctgtatttctgtatctgtgtgGATGTTACTGACAATAACCTGGCCTACCTGGAGGGCATTCATAACTTTGTGGAGGTCTTAAACGAATACTTCCACAATGTGTGTGAATTAGATTTGGTCTTCAATTTCTACAAGgtgtaCACGGTAGTAGACGAGATGTTCCTGGCTGGAGAGATTCGAGAAACAAGCCAGACGAAGGTCCTGAAGCAGCTGCTCATGCTGCAGTCACTGGAGTAGAGACGTCACTGAATCACAGCCATACACCaccgcagcagcagcaggatcCTCTCGAATCTGCTGAAAGCCAGTCTATATTGTTTCTGTGTATAGATGTTGTCACTGATATATATAACCCAACATTTCAGCCTCTTAAAGCTGTGCTATGTAAGATTTTAAGAGTGTGAGTGTTTAAAAGCTTTATGATACTGAGAAAGATGACTGAATGCAGTTGAAGAATGAAAAGCCTGGTATGAAAGCTTGCACCTGATTTCTTCAACTGCCTTTTCAGACATTCAGGTGtatgaataatgttttttttttttttttttcttttcccagtTAAGACCCAATTCAGTGATCCCTATCAATTCACTACAGGAGTATAAATGTTTTCAATGTCTCATAACACCTTACATAGTATAACTTTACAGTTTTTAAGTCTTGTAGGAAGGTCTCAAAATGGCACTGCCTATTTTGCTCTTTCTTGATGCATTCAGTTTATAATTCAATGAATTTCAAGATTGGACATGCATTTTTGTGAGGCCGCTGTAGTCAGAATTGTCTCAGTTTTTTTCTCCGGTTGAATTTTTATGTTGCAAGGTTAGAATTTTGCCACAAACGTGTGTGAACGATTTGTCCCTGcccattaacacattaacactaaaCTGCTGAATAACCAGCAGGATAAATAAAACTGGAATTTCTGATAAACTATTGGAGCCCTGTATAAAATCAtgtataaaaagaagaaaaacacactttcacaccatTAGTTCTGGGAAtttttgtattgtgtgtgtatatacattatatagctATATCTATCTCCATGTGTTTTAGGTCAATCATACAATCTGAAACTACGAGCTTCATTCCAGTAGGCAaatgtctctctgtttttgctTAGTTACCAGTACCAACATGCACACAGTCAAACCCAAACTGTTCAGCGTTAGCCCACTGGCTATATGAACATCTAAGACACCTTGAAGAAGTTGAGCTATTAGCAGTAATTGTGGCGTGTTTGCTGAATGAACAAAGGCACACAGTGATGGGGAGCTTGTTTAGCCAGCAAGGCTGAACAGATCTTACAGCACTCACAGGGAACATACACAACAAAAGACTGCATCTACTTTTTATCTCCAAATTCTGTGGCTCTGCTCCCAACTAGCgcttccatagcaacagctctgGTCAGCCTCGAGCCTCTTTGGACTGGTTTTCTGGATTCCGATTAAGCTTAGACCTGGACCATTACATGCAAGAAATAACCATTCCTTAGTACTTTTAGCTCTGGACTAGGCTTAATCAGAATCTCTGATTCTGCTCCATTACatgtttaaagtttttaatctgtcttaatttttatcttttcaatgtcatttttcattgttctttttgttttcatctgAAAGATATTATGCACTTGTCCTTGTGAGATTGCGGAGTGAAGgtaatgtgtttttattctttgttcAGATCAATATGTACccataaaaaaggaaagagaaataaaagtagCAAAATTA

Function

symbol description
ap2s1 Predicted to enable clathrin adaptor activity. Acts upstream of or within habituation. Predicted to be located in membrane. Predicted to be part of AP-2 adaptor complex. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in familial hypocalciuric hypercalcemia 3. Orthologous to human AP2S1 (adaptor related protein complex 2 subunit sigma 1).

NR:

description
AP-2 complex subunit sigma isoform AP17delta

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0006886 intracellular protein transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II biological_process
GO:0050690 regulation of defense response to virus by virus biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0016032 viral process biological_process
GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway biological_process
GO:0030122 AP-2 adaptor complex cellular_component
GO:0005829 cytosol cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K11827 AP2S1; AP-2 complex subunit sigma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934876.2 True 2114 mRNA 0.39 5 16108511 16116831

Neighbor

gene id symbol gene type direction distance location
ppm1na LOC108277626,LOC108426978 coding downstream 84520 16017085 ~ 16023991 (-)
LOC113539270 NA coding downstream 92915 16008281 ~ 16015596 (-)
ptgir ptgir,LOC107567267 coding downstream 104139 15972162 ~ 16004372 (-)
slc37a4a slc37a4,slc37a4a,LOC107670393,LOC107593481 coding downstream 159288 15940214 ~ 15949223 (-)
sgcg sgcg coding downstream 175042 15921491 ~ 15933469 (-)
tmem160 tmem160,LOC106537151 coding upstream 149747 16266578 ~ 16273540 (-)
egln2 LOC108278008,LOC108243533,LOC105901526 coding upstream 163957 16280788 ~ 16309690 (-)
pitpnaa pitpna,LOC107685084,LOC107743636,LOC107548584 coding upstream 203247 16320078 ~ 16328662 (-)
slc43a2a slc43a2,LOC107548581,LOC107685082,LOC107589710 coding upstream 213097 16329928 ~ 16352988 (-)
myo1cb myo1c,LOC108277898,LOC107756890,LOC107743634 coding upstream 249363 16366194 ~ 16416374 (-)
G227002 NA non-coding downstream 2145 16103733 ~ 16106366 (-)
LOC117599083 NA non-coding downstream 16004 16091314 ~ 16092507 (-)
G226980 LOC108278227 non-coding downstream 77547 16030247 ~ 16030964 (-)
G226864 LOC108277678,LOC108277679,LOC108426971,LOC103047626 non-coding downstream 262341 15818624 ~ 15846170 (-)
G226831 NA non-coding downstream 271020 15809718 ~ 15837491 (-)
G227207 NA non-coding upstream 200866 16317697 ~ 16317922 (-)
G227210 rilp non-coding upstream 241505 16358336 ~ 16438387 (-)
G227233 NA non-coding upstream 347105 16463936 ~ 16464136 (-)
G227256 NA non-coding upstream 417942 16534773 ~ 16535241 (-)
G227263 NA non-coding upstream 424024 16540855 ~ 16541061 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 263728 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 707734 15365359 ~ 15400777 (-)
gab2 gab2,LOC107561751,LOC107724943,LOC107593477 other downstream 1517975 14540477 ~ 14590536 (-)
zmp:0000001236 maml2 other downstream 1571675 14487493 ~ 14536836 (-)
abcg1 abcg1,LOC108277612,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC107677096 other downstream 2064737 14024245 ~ 14043774 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other upstream 2466 16119297 ~ 16165036 (-)
G227205 NA other upstream 199820 16316651 ~ 16317345 (-)
si:dkey-118k5.3 LOC108277747 other upstream 237833 16354664 ~ 16364336 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 1113925 17230756 ~ 17250154 (-)
psenen psenen other upstream 1317224 17434055 ~ 17438614 (-)

Expression


Co-expression Network