crybb1l3 (LOC108426910,LOC103042748,LOC106924296,LOC104922853)


Basic Information

Item Value
gene id crybb1l3
gene name LOC108426910,LOC103042748,LOC106924296,LOC104922853
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16520890 ~ 16524642 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934888.2
AACCAGAGCTTCATTTGGGCCTTGCCATCTTTTCCTCTGCCAGCACCTCTCTTACATTCCATCGCTCTCTTCTTGACTGCAGTGTTCTGCCTCAGCCATGTCTCATACCGCTGTGCAGGGGAGTATTGGGAGCCGTTCCGCCATAGGGATGCACACATACAAAATATATCTGTACGAGTGTGAGAATTTCCAAGGTCGGATGATGGAGTTGAACGGCGAGTGTCGTAATATCTGCGATAAGGGCTTTGACCGTGTGCGCTCCATCAGAGTGGAGTGTGGCCCATGGGTGGGTTACGAACAGCAGGACATGCGTGGGGAGATGTTCGTGTTGGAGAAGGGAGAGTATCCTCGCTGGGACACTTGGTCCAATAGTTACCGCTGTGATCGTTTCATGTCCCTCAGGCCAGTCCGCATGGACCCCCAGGATCATAAGATCTGCCTGTATGAGTGTGCGAACTTTGAGGGCCGTAAGATGGAGATTTGTGATGAGGACATCCCCAGTCTGTGGTCCTATGGCTTCTATGACAGAGTAGCAAGCATTCAGGTCTCCGGAGGAACGTGGGTTGGGTACCAGTACCCAGGCTATCGTGGATACCAGTACCTGTTTGAGTTTGGGCCCTTCAAGCACTGGAATGAGTGGGGAGCCAACCATCCCCAGATCCAGTCCATCCGCCGAGTGCGAGACATGCAGACACATCGACGAGGCTGCTTCGAGATGACTGCGTAAGCGACACAGCAGGAACTGATGGACAGGTTACAGGAGAGTCTCTGTGGTGTATAAAATTATCCCTCAATTTACACAGACCACTTCAGACCCGTGTGAAGAGCTCAATCAGTTTACAAGGTGAAATTATGTGTTATGAAGCTACAGCTCACACAGCCTAATAATTTTGTTAAGCCTTTTCCTTGCATTCACCTATATTTATCCATAATGTGTTAGctctatttaaattaaattgcttttttaaattattgggCACTTTCCCAGCAATCtaacttattatttttaatgcatgctagctattaattaattttcaaaaaacTGTGCATTAACTGCACATTCCTACTGAAGCATAAATTATGAACTGAGCATGCGACAGGTATTGGAATGAGAAAACCCTGGCCTCTTAATCTTTTCAGAAAAGACTCCTTATGTAGTAGGCTTAATTGTATAAGgattttattttctgctctTGTTTGTGGACAAGATTCACATCCCCGTCATCTCATGTGATGAGGGGACTGTGCAGTCCTGTCACACATATCTCTCTCAGGGATGCTTGCATCTGGAAATTCTTATATTTCccataaagacaaataaatat

Function

NR:

description
beta-crystallin B1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934888.2 True 1325 mRNA 0.46 6 16520890 16524642

Neighbor

gene id symbol gene type direction distance location
unc119a unc119,LOC103043060,LOC108431312,LOC107704800,LOC107757471,LOC107548572 coding downstream 2339 16501564 ~ 16518551 (-)
slc46a1 slc46a1 coding downstream 41243 16474935 ~ 16479647 (-)
vtna LOC108277704 coding downstream 55022 16460186 ~ 16465868 (-)
myo1cb myo1c,LOC108277898,LOC107756890,LOC107743634 coding downstream 104516 16366194 ~ 16416374 (-)
slc43a2a slc43a2,LOC107548581,LOC107685082,LOC107589710 coding downstream 167902 16329928 ~ 16352988 (-)
tspan13a tspan13 coding upstream 328537 16853179 ~ 16857519 (-)
LOC113539389 lrrc72 coding upstream 340540 16865182 ~ 16878741 (-)
arl4aa arl4a coding upstream 581948 17106590 ~ 17109061 (-)
si:dkey-30e9.6 NA coding upstream 584881 17109523 ~ 17113260 (-)
LOC113539219 LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding upstream 617703 17142345 ~ 17145261 (-)
G227233 NA non-coding downstream 56754 16463936 ~ 16464136 (-)
G227210 rilp non-coding downstream 82503 16358336 ~ 16438387 (-)
G227207 NA non-coding downstream 202968 16317697 ~ 16317922 (-)
G227002 NA non-coding downstream 414524 16103733 ~ 16106366 (-)
LOC117599083 NA non-coding downstream 428383 16091314 ~ 16092507 (-)
G227256 NA non-coding upstream 10131 16534773 ~ 16535241 (-)
G227263 NA non-coding upstream 16213 16540855 ~ 16541061 (-)
G227281 NA non-coding upstream 32043 16556685 ~ 16556899 (-)
G227286 NA non-coding upstream 36363 16561005 ~ 16561214 (-)
G227288 NA non-coding upstream 38846 16563488 ~ 16563694 (-)
si:dkey-118k5.3 LOC108277747 other downstream 156554 16354664 ~ 16364336 (-)
G227205 NA other downstream 203545 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 355854 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 676107 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 1120113 15365359 ~ 15400777 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 706114 17230756 ~ 17250154 (-)
psenen psenen other upstream 909413 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1863866 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 2036780 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 3047031 19571673 ~ 19572614 (-)

Expression


Co-expression Network