lin37 (lin37)


Basic Information

Item Value
gene id lin37
gene name lin37
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17414024 ~ 17420461 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934910.2
AACCTGACCAATGAGGAAAAGGAAATTCAGTTGCGCGCGGAAGAGGAAAGTCAAGTGAACTGAAAATAGATAGCCGAGCTAAATGCTAAAGTCTCTGGCTGTCTGTTATTTTGTTAGATAATgacAGACTAATGGAACTGCAGATGTCAGTATTTGTTGAATGAGGACAAGTCTGCAATCAAAATGCTTCACACGAAAGTTAAGATGGAGAAACCAGATACCGAGGGTGCTGTTGCCAGAAGTCGTCTTGATGCAGTGCTGCAAGGTCTGGTGGAGAAAAGTGACAGTGAGAGAGATCAGAATGAAGATGATTCTGGAAAAATGGTCGCAGACTCCATGAGCAAGGACTTATCCCCTTCCTCTCTTGGGAAAAGGCCATCTTCACGCTTTGCACAACATCGGAGAAAGAAGCGCAAAGAGATGGAGGACGGCTTATCTGAGACTAACCAGCACAAACAAAACTCGTACATCATCAAGCTGTTTGATCGCAGTGTGGATTTGGCGCAGTTCAGTAGCAACACTCCACTCTACCCCATCTGCAGATCGTGGATGAGGAACAACCCCACTGTACGAGAGAGACCAATGCCCAGTCCACCTCATAGcatggcagaggaggagGTGTCAGACATGCTGAATGGCAAAGTTCAAAATATATACCGCCTTCCACCTCCTGGTTCTTGTCCGGTTAATGAGTCTGGTGAACCAGTCAACTTAAGGATTCCACCCACAGAGAAACCCACCATAAGCCAGTCCACAGACACTGCATCAGGAGCCACTTCTCTCATGCTGAATCACATGAAACGCTGGAAGAAAATTAGACAGAAGTGGAAAGAGGCTTCTAATAAGAACCAGCTACGCTACAGCGAGAGCATTAAGGTCCTGAAAGAGATGTACGAGCGCTAGCTCATCTTCATCCCCTGCATCAGGAGACAGTTATGGTCTTCCATATGCAACTTCATTGAAACGGAGGTTAAGTGGAGAGTTTCAGGTGGAAAAATGGACTGATAATTGTGTAGTTGTCTgcacatgttattttaatatttgttaataatcaaatatttgGTAAGTTAGTGATGTTAGTATGGCCTGCAATCCAGTAGCAAAAGCACAGATGTGATGTATTTTCAATTTCCATCTTTGTGATGCAGGTCAGTAGAGTCAGACGAATGCATGTTTGTTCTACAATCTGGTAATAACAAAAGAAGATAATTTgtgaacaaaataaatgttcacTTTTTCCATGCATGTTTTAAA
>XM_026934911.2
ATGAGGAAAAGGAAATTCAGTTGCGCGCGGAAGAGGAAAGTCAAGTGAACTGAAAATAGATAGCCGAGCTAAATGCTAAAGTCTCTGGCTGTCTGTTATTTTGTTAGATAATcaggacAGACTAATGGAACTGCAGATGTCAGTATTTGTTGAATGAGGACAAGTCTGCAATCAAAATGCTTCACACGAAAGTTAAGATGGAGAAACCAGATACCGAGGGTGCTGTTGCCAGAAGTCGTCTTGATGCAGTGCTGCAAGGTCTGGTGGAGAAAAGTGACAGTGAGAGAGATCAGAATGAAGATGATTCTGGAAAAATGGTCGCAGACTCCATGAGCAAGGACTTATCCCCTTCCTCTCTTGGGAAAAGGCCATCTTCACGCTTTGCACAACATCGGAGAAAGAAGCGCAAAGAGATGGAGGACGGCTTATCTGAGACTAACCAGCACAAACAAAACTCGTACATCATCAAGCTGTTTGATCGCAGTGTGGATTTGGCGCAGTTCAGTAGCAACACTCCACTCTACCCCATCTGCAGATCGTGGATGAGGAACAACCCCACTGTACGAGAGAGACCAATGCCCAGTCCACCTCATAGcatggcagaggaggagGTGTCAGACATGCTGAATGGCAAAGTTCAAAATATATACCGCCTTCCACCTCCTGGTTCTTGTCCGGTTAATGAGTCTGGTGAACCAGTCAACTTAAGGATTCCACCCACAGAGAAACCCACCATAAGCCAGTCCACAGACACTGCATCAGGAGCCACTTCTCTCATGCTGAATCACATGAAACGCTGGAAGAAAATTAGACAGAAGTGGAAAGAGGCTTCTAATAAGAACCAGCTACGCTACAGCGAGAGCATTAAGGTCCTGAAAGAGATGTACGAGCGCTAGCTCATCTTCATCCCCTGCATCAGGAGACAGTTATGGTCTTCCATATGCAACTTCATTGAAACGGAGGTTAAGTGGAGAGTTTCAGGTGGAAAAATGGACTGATAATTGTGTAGTTGTCTgcacatgttattttaatatttgttaataatcaaatatttgGTAAGTTAGTGATGTTAGTATGGCCTGCAATCCAGTAGCAAAAGCACAGATGTGATGTATTTTCAATTTCCATCTTTGTGATGCAGGTCAGTAGAGTCAGACGAATGCATGTTTGTTCTACAATCTGGTAATAACAAAAGAAGATAATTTgtgaacaaaataaatgttcacTTTTTCCATGCATGTTTTAAA
>XM_026934912.2
ttaatatagcTAGCTCGCTAGCTAGCGAAAGTCAGCTGATTAGGTTAGCTGCTAGCTAGCAGGTTACGTTTGGGTGTAGGAGCTAGTCAGCTGTTTTGTTACTCATTCGGATACGCTTATcaggacAGACTAATGGAACTGCAGATGTCAGTATTTGTTGAATGAGGACAAGTCTGCAATCAAAATGCTTCACACGAAAGTTAAGATGGAGAAACCAGATACCGAGGGTGCTGTTGCCAGAAGTCGTCTTGATGCAGTGCTGCAAGGTCTGGTGGAGAAAAGTGACAGTGAGAGAGATCAGAATGAAGATGATTCTGGAAAAATGGTCGCAGACTCCATGAGCAAGGACTTATCCCCTTCCTCTCTTGGGAAAAGGCCATCTTCACGCTTTGCACAACATCGGAGAAAGAAGCGCAAAGAGATGGAGGACGGCTTATCTGAGACTAACCAGCACAAACAAAACTCGTACATCATCAAGCTGTTTGATCGCAGTGTGGATTTGGCGCAGTTCAGTAGCAACACTCCACTCTACCCCATCTGCAGATCGTGGATGAGGAACAACCCCACTGTACGAGAGAGACCAATGCCCAGTCCACCTCATAGcatggcagaggaggagGTGTCAGACATGCTGAATGGCAAAGTTCAAAATATATACCGCCTTCCACCTCCTGGTTCTTGTCCGGTTAATGAGTCTGGTGAACCAGTCAACTTAAGGATTCCACCCACAGAGAAACCCACCATAAGCCAGTCCACAGACACTGCATCAGGAGCCACTTCTCTCATGCTGAATCACATGAAACGCTGGAAGAAAATTAGACAGAAGTGGAAAGAGGCTTCTAATAAGAACCAGCTACGCTACAGCGAGAGCATTAAGGTCCTGAAAGAGATGTACGAGCGCTAGCTCATCTTCATCCCCTGCATCAGGAGACAGTTATGGTCTTCCATATGCAACTTCATTGAAACGGAGGTTAAGTGGAGAGTTTCAGGTGGAAAAATGGACTGATAATTGTGTAGTTGTCTgcacatgttattttaatatttgttaataatcaaatatttgGTAAGTTAGTGATGTTAGTATGGCCTGCAATCCAGTAGCAAAAGCACAGATGTGATGTATTTTCAATTTCCATCTTTGTGATGCAGGTCAGTAGAGTCAGACGAATGCATGTTTGTTCTACAATCTGGTAATAACAAAAGAAGATAATTTgtgaacaaaataaatgttcacTTTTTCCATGCATGTTTTAAA

Function

symbol description
lin37 Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be part of Myb complex. Orthologous to human LIN37 (lin-37 DREAM MuvB core complex component).

NR:

description
PREDICTED: protein lin-37 homolog

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0017053 transcription repressor complex cellular_component

KEGG:

id description
K21774 LIN37; protein lin-37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934910.2 False 1254 mRNA 0.43 10 17414024 17420461
XM_026934911.2 False 1247 mRNA 0.43 10 17414024 17420451
XM_026934912.2 True 1255 mRNA 0.44 10 17414024 17420232

Neighbor

gene id symbol gene type direction distance location
LOC113539361 NA coding downstream 76130 17328119 ~ 17337894 (-)
LOC113539084 NA coding downstream 87225 17317354 ~ 17326799 (-)
LOC117599112 NA coding downstream 114411 17299219 ~ 17299613 (-)
LOC113539358 LOC108277878 coding downstream 131711 17275928 ~ 17282313 (-)
LOC113539359 LOC108277878 coding downstream 138805 17262576 ~ 17275219 (-)
hspb6 LOC108277671 coding upstream 9291 17429752 ~ 17432316 (-)
gabbr1a gabbr1,gabbr1a,LOC108277950,LOC108432983,LOC107586826,LOC107683297 coding upstream 97546 17518007 ~ 17568547 (-)
sh3bp5la LOC108277951 coding upstream 150067 17570528 ~ 17580546 (-)
mgat1a LOC108278272 coding upstream 162878 17583339 ~ 17589221 (-)
rnf183 LOC108277924 coding upstream 173730 17594191 ~ 17599439 (-)
G227755 NA non-coding downstream 6799 17405948 ~ 17407225 (-)
G227640 NA non-coding downstream 106300 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding downstream 108662 17302063 ~ 17305362 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding downstream 250439 17161511 ~ 17163585 (-)
G227440 NA non-coding downstream 500864 16912959 ~ 16913160 (-)
G227786 NA non-coding upstream 66170 17486631 ~ 17489432 (-)
G228131 NA non-coding upstream 654135 18074596 ~ 18074799 (-)
G228188 NA non-coding upstream 996993 18417454 ~ 18418564 (-)
G228483 NA non-coding upstream 1185466 18605927 ~ 18608241 (-)
G228564 NA non-coding upstream 1590963 19011424 ~ 19012679 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 163870 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 1049688 16354664 ~ 16364336 (-)
G227205 NA other downstream 1096679 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 1248988 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 1569241 15812389 ~ 15844783 (-)
psenen psenen other upstream 13594 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 968047 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1140961 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 2151212 19571673 ~ 19572614 (-)
G228758 NA other upstream 2287854 19708315 ~ 19708841 (-)

Expression


Co-expression Network