arpc5a (arpc5b,arpc5,arpc5a,LOC108277766,LOC108431159,LOC103032016,LOC107599090,LOC107698380)


Basic Information

Item Value
gene id arpc5a
gene name arpc5b,arpc5,arpc5a,LOC108277766,LOC108431159,LOC103032016,LOC107599090,LOC107698380
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17685877 ~ 17691354 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934949.2
TTGAGGGCGCGCTATGCGGAAGTGACTGCGGAAGGATTGCTTGCTTCCTGAAAAGTACCGGGGGCTCGGGCTACTCTTGCATTTTCTGTCCTATAATAACTTTGCAAGACATTTAAACATGTCGAAGAACACGGTATCGGACCGCTTCAGAAAGGTTGATGTAGACGAATATGACGAGAACAAGTTTGTGGATGAAGAGGAAAAAGGCGGAGAGAATCAGCTGGGTCCAGATGAGGCCGAGGTCGATTCCCTCATCAGACAAGGGAACATGATGGGTGCACTACAGGCTGCACTGAAGAACCCTCCAATCAACACCAAGAACCAGAACGTCAAGgaccGGGCTGAGGGTCTGGTACTGAAAGTCTTAACTGCCTTTAAGACTAGCGATATCGAGAAAGCAGTACAGTCTCTGGATAAAACTAAAGTGGATCTGCTTATGAAGTACATCTATAAAGGGTTTGAACGACCATCAGAGAACAGCAGTGCAGTGCTGCTCCAGTGGCATGAGaaggctCTTTCTGTAGGTGGTGTGGGCTCCATCGTGCGAGTGCTCACAGCTAGAAAAACCGTGTAACTCTCTCCATCAGGATGCCTTGGCAGCGCTGGCACAGGGATTGGCTGGCACAACCTCAGCGCCAGGCTCATCATTACACTGTGGAGGAcgtcagcctctctctctctctctctctctctctctctctctcttttcttgttctttttctctgtgaTTTTTTACTCTCATTATATTGCTCCCGTTCTGGGTTTCGTCCAGAGACAAAATACAGCAGCTCAGATCTGTATATCACCTGAACAGCAGCGTTCCTATTAAGTGGATTTGCAGATCTGATCTCTGTTCTTCACATGTTTACAAAAGCAGATGTTCCTCTAACTTCATCTGCTCCACGTCTTACACCCCAAGGAACTGTTAAAATAGCTTCAACTGAATTAAGATATATGTAATTCtggtatattattattatatatactggAACGTATGAGTGTTAACAGATATGACTATAGACTGTTGTCGTGTATGTTTTGTCATGTAAGATGAAATATCATACAGTCTCTCACCCCACAAACAGCTAACCTAATGCTAATCAGCTCACATAAGGGCACGCTCAGCGTACGTGTGTGCTTATGAAATCTGCAGGGCCTGAATCAGGTGCTTTGGCACTGATGTGTGTCAGTAAATGACTTTAAAAGTAATTAATCATGGTACGACATCCCACACCGGCCTCAGTGCTTAGCATACTTTCCTGATTATAAGTCCCACTGGAGTGTAAGAGGCATCTGCTTAGATTCAGTGACAGTGTCCATCTTTTCAACACAGTAGAGTCTTAGCTTTCTGTTAGTCTTCTGCCATAGCCGACACCTCAGCTTAACGGATCACCTTTTCTCATCTCTGTGTATTGTTATGCTCAGCTGCCATCAAAGCAGCTACCTGAATTACAAACTATGCCTGTATCTTACAAGCATCTGACAGACAAATGTTAAAGGTTAAGccaaaataaagaatattaagTTTGGTTATAACTAGTGGTAGGACGgtatactgtttaaaaaaaaaaaaaaaggtacacaGAGTTATGAGATACCGGTAtacatcattaaaataattttgtactTTTCACACAAGTACAGTCATACCTGGATATATCCAGGTATGACTGATATATCCAGGTATGACTGTTCTTGTGTGAAAAGTACGAAAttattttttgaacatttaaaaaagatgaAGCTCTGAGAACTttgtatttctgcatttttctaATAAACTACTAAATGCTAAGAGCGGTAAACATATGACAGTTTTACTAACTGAATAATTGAACAGTCACACTGCCACTGCAGTGTCATTTGTGGTGTTAAAATATGCTCATTTTAACCATGTTAACGAGAACCGTCCATACAAACAGCCTTGTGGTTTTCACTATTTCAGAAGTCACAACTGAGTTCACAAGATGTGGTGCAATATTGACATTTCTCAGTATGGCAGAAGCTATGGAAGTTCCGTTAGCACTTGATGCTATGTTTAATTACAGTTCATTTTAGTTGTACGGAGTCTATTCTTACAAACTGAACATCACATCTGAGGAAAAAGTTGATATTCTTGATAGTGTTGTCTTGTTTCTACAGtcgctacacaacactgaggaGGCCATATTTGccctgttgcctagcaacattGCTGTCCCAACTTTACCCACTGGAATGTTGAGCATATTAATTATCCGACTTCCCATTCTGAAAGCACAAGTTCTATGTATTAAAAGACCATGATGATAGTTTGTATGATCATGATAATTGTACCATTTTCTTGCAATACCGTTCCAACCATGAGTTATAGCTAAACATtttggctttattttattactgacaGCCTGTTCCTCAAGGACACTGATTTAGGATCAGCTCTTTATCAatgtttaattctgtttatCAGGACAGGACAAGCCAAAGACTGATCCAGCATCAGCATGCAGACTTTTGATCAAATAAAATCCATTGACTGTTGTACTGAAACATGTTTATGTATGTCCTGATCACTTATAAAGGCGTCATGTGGGTCTAGCCTTTGCTCACAATCTGCCATTTAGTACAGTAGATTTAGTAGCCGACTTCTGAGGAGCTGAACACAAATATACcgagtgagggtgtgtgtgtgtgtgtgctttccctCGAGTACTGCACAATATTGCCGGTACTAAACATTTCTAGCATTTCTAACATTGTATTTAGGGAATGCTCTTAGTGTAGCCTTTATGTAGTCCATCAAAGAAGCCATATGTGATGAACAGACTGACATGGCCATGTTTGAGAGTTTCTAGTTGTCCATATCACTCATTTGATCAAGTGCGAATATAATGTACCAGTTTACCGACTGCCTTATGAATTATTCCTTTTATAATGTGTTGTCCATTTGGAAGcaataaaaattgtattaattGAAAA

Function

symbol description
arpc5a Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Orthologous to human ARPC5 (actin related protein 2/3 complex subunit 5).
arpc5b Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Orthologous to human ARPC5 (actin related protein 2/3 complex subunit 5).
arpc5 A structural constituent of cytoskeleton. Contributes to actin filament binding activity. Involved in Arp2/3 complex-mediated actin nucleation and cell migration. Located in extracellular exosome and focal adhesion. Part of Arp2/3 protein complex. Biomarker of lung non-small cell carcinoma and lung squamous cell carcinoma.

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 5-like

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05754 ARPC5; actin related protein 2/3 complex, subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934949.2 True 2958 mRNA 0.40 4 17685877 17691354

Neighbor

gene id symbol gene type direction distance location
niban1b fam129a coding downstream 11213 17645397 ~ 17674664 (-)
dhx16 dhx16,LOC107704755 coding downstream 65985 17600050 ~ 17619892 (-)
rnf183 LOC108277924 coding downstream 86438 17594191 ~ 17599439 (-)
mgat1a LOC108278272 coding downstream 96656 17583339 ~ 17589221 (-)
sh3bp5la LOC108277951 coding downstream 105331 17570528 ~ 17580546 (-)
pla2g4aa pla2g4a,LOC107722605,LOC107693742,LOC107718137,LOC107677770,LOC107594671 coding upstream 3385 17694739 ~ 17709619 (-)
odr4 c17h1orf27 coding upstream 68303 17759657 ~ 17772060 (-)
prg4a NA coding upstream 108730 17800084 ~ 17808962 (-)
rxrga rxrga,LOC108278312,LOC108431152,LOC107718143,LOC107677771,LOC107589872,LOC106599103 coding upstream 121564 17812918 ~ 17823904 (-)
olfml2bb LOC108277438 coding upstream 186844 17878198 ~ 17888752 (-)
G227786 NA non-coding downstream 196445 17486631 ~ 17489432 (-)
G227755 NA non-coding downstream 278652 17405948 ~ 17407225 (-)
G227640 NA non-coding downstream 378153 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding downstream 380515 17302063 ~ 17305362 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding downstream 522292 17161511 ~ 17163585 (-)
G228131 NA non-coding upstream 383242 18074596 ~ 18074799 (-)
G228188 NA non-coding upstream 726100 18417454 ~ 18418564 (-)
G228483 NA non-coding upstream 914573 18605927 ~ 18608241 (-)
G228564 NA non-coding upstream 1320070 19011424 ~ 19012679 (-)
G228635 NA non-coding upstream 1657285 19348639 ~ 19348839 (-)
psenen psenen other downstream 247263 17434055 ~ 17438614 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 435723 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 1321541 16354664 ~ 16364336 (-)
G227205 NA other downstream 1368532 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 1520841 16119297 ~ 16165036 (-)
rwdd3 rwdd3 other upstream 697154 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 870068 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 1880319 19571673 ~ 19572614 (-)
G228758 NA other upstream 2016961 19708315 ~ 19708841 (-)
gdpd5b LOC108277648,LOC108433002,LOC103039705 other upstream 4059781 21751135 ~ 21811084 (-)

Expression


Co-expression Network