niban1b (fam129a)


Basic Information

Item Value
gene id niban1b
gene name fam129a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17645397 ~ 17674664 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934957.2
TGTGATTCACGCGTCAGCGCTGGTCGTTTCTCTTGACAGTGAAGACGTGCGGAGTTTGTGAGTAAACCGAGTTAACGGGAATAAGGGAGCCAGAGAAAGCCTTCTTCACCATGGGAGTGTCTTCCTCCAGCCTTTTAGACGAAACTAAATGTAACTACATCAGAGgacgGACTGAGGCTGAGCTGAACAACTTCAGCCCTCACTATAAGAGGCAGTACTGTGTGGCATTTTTCTCACAGCTGCAGGATGAAGTGGAGCAGCAGCAGACAGTTCACACACAGCTCCTCAAACAGAAGgagCCACCACAGGCCTCTGATTTGGTGTATAAGGACAGTGTACTGCACTTTGATGACAGTAAGAAGTGGAAGGAGAGGTTTGCAACGGTGCAGGCAGACTACAGTCTGGAGCTTCATGACAGCCAGGAGACTTTTGCAAAAGGAACTCCTGCACGTCAAATACTCCAACTAACAGGGGGCACTGTGCTGACTTCGGAGGAGAAATATTGTGCTCTAGTGGATAAGACCTTCCCTGACCTGAACAGCTCAAAAGAGGAGGCCCCTTCGCCCATGGTGACCATTCCAGGGCCGTTTCCTGTCTTCCTGAGACTCCCATACAGGAGAGATGTCTACTTCAGCTTCCAGGAGGAGGACAAACAGATTCGCTTCGTCTCCATTCTCTCTGACTGCATCCGCCATCAAAACCACGACTCTCTGAAGAAGACGACCTGTGAAGTCCAAGCTTTCCTTAAGGCCATTCATTTCTACAGACAGGAGAAAGGACATTATGAATCGTGGGAGATGTTAGTGGGCACCGACTGTCAAgtGCTGGCCAACTTGGTGATGGAGGAGCTCTTGCCGTCACTGCAGACAGAGCTATTGCCCAGGCTGAAGGGGAAGAAGGCTGAGAGGAAGAGAGTGTGGTTCACGACAGTGGAGGCGACGTATGAGCTGGTACAGGAGCAGCTTAGTGAGGGACTGCAGAGACTGAAGGACGAGTGCAGCGAGATCGTCAAACAGCAGGAGACACTCATTCGGTCCGACATGGACCAGATTGTCGACTCCAGCAACTTTCTGAAGTCCAAACTGCAAGGCCTTGTCTCAGAGCCGGCGATGAAGTTCTGCTCTGACAGTGTATCTCCGTATCTGGCCTCCATTCTGGAGGAGCTAATGGGTCCAGTGAGTTCTGGCTTCCAGGCCGTGAGGCAGCGTTTGGAGACAGAGCTGAGCCGAATCTGCAAGGACTTCCAACCTGGAGGAACTACGGAGGAACTTACTAAAGCGTTAGAGGAGGTGTCTCATGCCCAGCTGGAGGACTGTTATCAGCATGTCTCCATACTGAAGGAACAGCTGCAGGAGCTGCGCAGCCGCTTCAAGTTCTCCAATTCCACACTGGTGGTGCACAAGACACAGAGCCACATGCAGCAGCTGATGGAGAATGCTGTGTACACATTCGAATTGCTGCTTCAGTCAGCCATGAAGGATGAACCTGAGAAATTGGCCACAGTCATGGAGAAAGCCAAGCTCCGAGTGCTTAAGCAATATGACTATGACAGCAGCACAGTGAGGAAGATGATTTTCCAGGAGGCTCTGGTGGACATCACACTGCCAGCCATCAGGAGAAACCTGGCACCCagctgtaaaactGAGCTGCAGAAGTATGAGCAGTACATTTTTGCTGATTACACAAACTTCATCCAAGTGGAGAATGTCTATGAGGATATAATGCTGAACACCCTGAATAATGAAGTAAACAAAGTGGTGAAAGAAGCAGCCACTCTGAAGAAGCACAACCTGTTTGTGGACAGCACCGAGCTGCAGTGTCTGAGTCAGAGCAGTCTGACAGACAGCCGCACTCCGCCTCGCTCAGCCCCCTCCAGTCCAGCCAAAGTGCAGTCTGCAGCTGCAGCACAAAAAGCTGAGCAGGTTTCCAGCTCCTTGATGGTGGAAAATGGTAGTTCTGAGAAGCAACCAGTGGAGAAGAAACAAGAGTTTGCAGGCGAATCATCTCAGAGAGTTGAGGCACAGCAATCTACGCCCAGTGAGCTTTCAGCAGTACCCAGTATGCCATCTCGTGTTTCTGCAGATTCCCCAGATCTATCTAAGGTCCCTTCAACATCCATATCTGATTCCTCAGAGCCGATGTGTGAGGTTTCTATGGATAAACCTGACATGGTGTCCTGCACCTCATTACCAGAAGCAGCTGATGCTACAGCTCAGAGCCAAGCTATGACATCCACTGTGACTGATTTCAAGACTTCTCCTGTAATAATCGTTTCAGAACCTGAGTCACTTGCAGATCAAACCATTTCTGGCAACCTGCCAATTGAGGTGAACACAGAAAGTCCTGTTCCTCCAGCATCTGTGAAAGAAAATCAAAGTGTCAATGCTTCAGAAGAGATAGAGGTTGGTACTGCAATTCAGTCTCATTCTGAGATCTGTGATGCTGTGCCTGCACCCCCTGAGGAGCCACACAGTGGTACAGTCCAGCCTGATACAACCAATGCTGAAAATCCTTCAGGTTCCCAGACTAAAGACACAGATGACACtcacactgaaacactttcCGGTGATTCATCTCCCCCTATAGTTGACACCGCAGTCAGCGAGACAGCAGCAGAAAGTGTGATGGAGAGCTCCACCACTACCAACACAAATGGACTCCCCAGTATCCCTGATCTTCCAGCAGGGGGTGACTTGACTGCACAGTCTGCAACGGTAGAGCCTGAAGGCACCACAGGTCCACACCGAGACTCTTTCACTGAGGATCAAGAAGCAGAAGAGCCGCTGGACAGCGTGAAGTCCATCAGAGATCTGGTGGTGGAAATCATTGAGGTGGAGGACATTGTGACTCCCTGTCCAGACAGTAGGGGAACTCAGTAGAGGCCTCTTTAGTGAATTAACTCCTAAGGGACATACTGCACAGGGGCTTTTACAAACAACTAAACAAAATCGTATTGCGATTGCGTCTAACCCAGTTACAGTTTAGActgaaaatgcttttctttaaatattgtaattaaatCTTATCACATTGTTTGTACACTGACATTCCAAGAAAGAAAAGGATATCAgaagtttatataattttacatcttaaaaatattgtttagaaTTAGTTTAGTTAGCACTGCACTTTGTATGTAACACTTATTCTCTTTGGAATatctcaattttatttgcaaatgcTTGTGTATTAATTAGTATTACATTCTActtaattactttaaaataagaTCTCCAATGAGGGAACAGTGTTTTACATGGTACATCAGTGGACTCAAAGTGCCACTGAGTGTGTTACCTTGTGTAGGAGAACATTAGTCGAAGTACAGTACTGCTCATATATATTGGACTGTTTCATAACTGCAATAAACTGATATTTTCTACCTAGCATGGTAAGCATTGTTTTAACA

Function

NR:

description
PREDICTED: protein Niban-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934957.2 True 3412 mRNA 0.47 14 17645397 17674664

Neighbor

gene id symbol gene type direction distance location
dhx16 dhx16,LOC107704755 coding downstream 25505 17600050 ~ 17619892 (-)
rnf183 LOC108277924 coding downstream 45958 17594191 ~ 17599439 (-)
mgat1a LOC108278272 coding downstream 56176 17583339 ~ 17589221 (-)
sh3bp5la LOC108277951 coding downstream 64851 17570528 ~ 17580546 (-)
gabbr1a gabbr1,gabbr1a,LOC108277950,LOC108432983,LOC107586826,LOC107683297 coding downstream 76850 17518007 ~ 17568547 (-)
arpc5a arpc5b,arpc5,arpc5a,LOC108277766,LOC108431159,LOC103032016,LOC107599090,LOC107698380 coding upstream 11213 17685877 ~ 17691354 (-)
pla2g4aa pla2g4a,LOC107722605,LOC107693742,LOC107718137,LOC107677770,LOC107594671 coding upstream 20075 17694739 ~ 17709619 (-)
odr4 c17h1orf27 coding upstream 84993 17759657 ~ 17772060 (-)
prg4a NA coding upstream 125420 17800084 ~ 17808962 (-)
rxrga rxrga,LOC108278312,LOC108431152,LOC107718143,LOC107677771,LOC107589872,LOC106599103 coding upstream 138254 17812918 ~ 17823904 (-)
G227786 NA non-coding downstream 155965 17486631 ~ 17489432 (-)
G227755 NA non-coding downstream 238172 17405948 ~ 17407225 (-)
G227640 NA non-coding downstream 337673 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding downstream 340035 17302063 ~ 17305362 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding downstream 481812 17161511 ~ 17163585 (-)
G228131 NA non-coding upstream 399932 18074596 ~ 18074799 (-)
G228188 NA non-coding upstream 742790 18417454 ~ 18418564 (-)
G228483 NA non-coding upstream 931263 18605927 ~ 18608241 (-)
G228564 NA non-coding upstream 1336760 19011424 ~ 19012679 (-)
G228635 NA non-coding upstream 1673975 19348639 ~ 19348839 (-)
psenen psenen other downstream 206783 17434055 ~ 17438614 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 395243 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 1281061 16354664 ~ 16364336 (-)
G227205 NA other downstream 1328052 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 1480361 16119297 ~ 16165036 (-)
rwdd3 rwdd3 other upstream 713844 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 886758 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 1897009 19571673 ~ 19572614 (-)
G228758 NA other upstream 2033651 19708315 ~ 19708841 (-)
gdpd5b LOC108277648,LOC108433002,LOC103039705 other upstream 4076471 21751135 ~ 21811084 (-)

Expression


Co-expression Network