LOC113539358 (LOC108277878)


Basic Information

Item Value
gene id LOC113539358
gene name LOC108277878
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17275928 ~ 17282313 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935075.2
ATATTTGTAGTGCAGTGGCAGTCTGTCACTTACAAGACACAGAATAGGTTTCTACATCCAACAACCAAAAATTTTAAGTTGCAGCATGGATCCACAGTCAAAAATACTGCTCTGCTGGATTTGCCTTCAAGTGATCTTTGTCTCTGCTTTTTCGGATGTGTGGAAGGCAGAAGTTGTCTCTCCAGTGGAGGCGCTGGTGTCATCTTGTGTCGTGTTGCCCTGTAAGTTTAATTACCCTGGCCTTCAACGTTCTGACTCTCGGCTGAAGGGAATCTGGCACAAAGATCCAAACAAAAATGAGCGTATCTATGATGAAGATCCTTTCTTGATTGAGGATAACTTCAAGGGGCGCACAAAGCTAATTGGCCGACTGGGTGAGAAAAACTGCTCGTTGGAGATAGACGAAGTGAGAGACCACGACGATGGCCCGTTCTGTTTCAGAGCTGAAATCACAAATATAGAGAAATTCTCTTTTGTGGAGAAGTGTGTGACCATCAATATGAAGTCCGAACCTGACAAACCAAATCTGGATCACGAAGAATCCTTCACAGAGGGAACAGCTGCTGTCTTTAAGTGTTACGTCAGACACACCTGTCCCACACACCACCCAACTATTGAATGGAATCGTCAAGATGCTAAACCTCGTTTGTCCTATAAGGACAATGGCTTTGGAGTTTGGGAGGTGGAGTCCCTCCTGACCTTCCCTGCCACAGAGAAGGACGATCACACTGACATCACCTGCACTGTCACATTCCACGGCAACAAGAAATCTGCAGTCACTCACAAGATATACATAAAACGTGAACAAAATTTCTTTCACATCATTATTCCTGTGGCCGCTGTGCTCGGAACCATCACTGTATTTGGATTGGCATGTTTCTTTGTGACCAAGAGATACAAGAAACAGATCCAAGAGCTTCAATCTAGAAATCCAAATGGGGTATGGAGTCGTCTCTCCAGAATGTCGCACAGGGTCAGGTCAGTGGGACGTATAAGGACCATGGGAGACAGAGCCTGATTCCCTCAAAACTAATCTAAGTAGACTCATCTGTTGCCTGTTTTTATATACGCGCTTGAccagaaaaaatgtaattttaagaGGCAGGCTTAATGTTTTTGGTATGTTAGGTATaatatttgtttgtaaaatgcaattaaatctattatttgtgtgtgtatgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtt
>XM_034310934.1
ATATTTGTAGTGCAGTGGCAGTCTGTCACTTACAAGACACAGAATAGGTTTCTACATCCAACAACCAAAAATTTTAAGTTGCAGCATGGATCCACAGTCAAAAATACTGCTCTGCTGGATTTGCCTTCAAGTGATCTTTGTCTCTGCTTTTTCGGATGTGTGGAAGGCAGAAGTTGTCTCTCCAGTGGAGGCGCTGGTGTCATCTTGTGTCGTGTTGCCCTGTAAGTTTAATTACCCTGGCCTTCAACGTTCTGACTCTCGGCTGAAGGGAATCTGGCACAAAGATCCAAACAAAAATGAGCGTATCTATGATGAAGATCCTTTCTTGATTGAGGATAACTTCAAGGGGCGCACAAAGCTAATTGGCCGACTGGGTGAGAAAAACTGCTCGTTGGAGATAGACGAAGTGAGAGACCACGACGATGGCCCGTTCTGTTTCAGAGCTGAAATCACAAATATAGAGAAATTCTCTTTTGTGGAGAAGTGTGTGACCATCAATATGAAGTCCGAACCTGACAAACCAAATCTGGATCACGAAGAATCCTTCACAGAGGGAACAGCTGCTGTCTTTAAGTGTTACGTCAGACACACCTGTCCCACACACCACCCAACTATTGAATGGAATCGTCAAGATGCTAAACCTCGTTTGTCCTATAAGGACAATGGCTTTGGAGTTTGGGAGGTGGAGTCCCTCCTGACCTTCCCTGCCACAGAGAAGGACGATCACACTGACATCACCTGCACTGTCACATTCCACGGCAACAAGAAATCTGCAGTCACTCACAAGATATACATAAAACGTGAACAAAATTTCTTTCACATCATTATTCCTGTGGCCGCTGTGCTCGGAACCATCACTGTATTTGGATTGGCATGTTTCTTTGTGACCAAGAGATACAAagataaggtggatccagagccgatctggggaacactgggtgtgaggagGCAATAAACTCTGGATAGGAGACCAGTCCATCGCAtgccatacacactcaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935075.2 True 1214 mRNA 0.43 8 17275928 17282313
XM_034310934.1 False 1000 mRNA 0.46 6 17277722 17282313

Neighbor

gene id symbol gene type direction distance location
LOC113539359 LOC108277878 coding downstream 709 17262576 ~ 17275219 (-)
tmem106ba tmem106b,LOC107730846,LOC107683194 coding downstream 119962 17146935 ~ 17155966 (-)
LOC113539219 LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding downstream 130667 17142345 ~ 17145261 (-)
si:dkey-30e9.6 NA coding downstream 162668 17109523 ~ 17113260 (-)
arl4aa arl4a coding downstream 166867 17106590 ~ 17109061 (-)
LOC117599112 NA coding upstream 16906 17299219 ~ 17299613 (-)
LOC113539084 NA coding upstream 35041 17317354 ~ 17326799 (-)
LOC113539361 NA coding upstream 45806 17328119 ~ 17337894 (-)
lin37 lin37 coding upstream 131711 17414024 ~ 17420461 (-)
hspb6 LOC108277671 coding upstream 147439 17429752 ~ 17432316 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding downstream 112343 17161511 ~ 17163585 (-)
G227440 NA non-coding downstream 362768 16912959 ~ 16913160 (-)
G227405 NA non-coding downstream 500853 16774853 ~ 16775075 (-)
LOC117599111 NA non-coding downstream 552736 16717249 ~ 16723192 (-)
G227319 NA non-coding downstream 631843 16643860 ~ 16644085 (-)
G227640 NA non-coding upstream 4030 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding upstream 19750 17302063 ~ 17305362 (-)
G227755 NA non-coding upstream 123635 17405948 ~ 17407225 (-)
G227786 NA non-coding upstream 204318 17486631 ~ 17489432 (-)
G228131 NA non-coding upstream 792283 18074596 ~ 18074799 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 25774 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 911592 16354664 ~ 16364336 (-)
G227205 NA other downstream 958583 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 1110892 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 1431145 15812389 ~ 15844783 (-)
psenen psenen other upstream 151742 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1106195 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1279109 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 2289360 19571673 ~ 19572614 (-)
G228758 NA other upstream 2426002 19708315 ~ 19708841 (-)

Expression


Co-expression Network