mgat1a (LOC108278272)


Basic Information

Item Value
gene id mgat1a
gene name LOC108278272
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17583339 ~ 17589221 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935118.2
GAATAGGTGACGGTGGGCGGGACTTCCGACATGTAGCGCGATCCGGAAGTAAACCGACGACTCTCGTCAGCGAAGCGAGAAGCTGGTCTGATATactaaaaactaaactaaaataaaataaggaacaacaaaaaaacacaaacttatGAGGCATGACCTAAGGAATGTTGGCCTACAGTATCTTGTAAATGTTCAGTTTActtctcagctttttttttttttttggagcttcAGTGAGAGAAATGGAGGAGAATGAGAACCGACTATCCTCATTCACCTCCGTGACCTTGGATTTTGGCTTGAAATTCAGCGGCTCGCCAAAGCACCAATGaccttatttaaaaacaatgaacATGTCCTTCTTTGCCTTCCGCCTTTATTACAGCACCACTTCTGTTGACTTCTGTCAGACTTCTAACCCGTTCTCCTAGCCACgcatataattatatttatgtgtaCAGGATATTTCACTTCCTGCCTTATGAGTTGGTTAATGAGAACTTGCACCTCCCTGACACCCTGTTCAGCATATCATACACTTCTGCTGCCCTGACACCCTAAGGTCCAGTTTAGCCATGTTCCGCAAGAAAGGTTCTCTAATTATTTGTGGCGCTTTGTTGTTTATTGCTTGGAATGCCCTTATTATATTTGTTCTCTTGGGACGGTCTCCTGGATATGAAGGAGGCAAGTCTATTTCAGCAGAAAAAGATCCACAAAACAACGACATTGTGGAGAAATTGCTTCATTTAATTAGCTCATTTGAAATGGAACTTGAGTCCCAGAACAAAATCCTTCTCCAGATCCAGAGCCATAAGTCACTGTGggaagaactaaaaaaaaatggcacagcTTTCCGCAGTAAATTAGATACCAGAAGTAATTTTACAAACGAGAGGCATAAATTCCTGTCATCCGGCGCGGTTATTCCCATCTTGGTCATGGCGTGTAACCGAGTGACAGTGAAACGCTGCTTGGACAAACTCCTCGAGTATCGTCCATCACCTGAACTCTTTCCCATCATCGTGAGCCAGGACTGTGGACACACGGAGACCGCTGATATGATCGCCTCATACGGCAGTAAACTGACTCACATTAAACAGCCTGATTTGTCAGAGATCTCGGTGCCTGCAGGCCACAATAAGTTCCAGGGTTACTACAAAATCTCAAGACATTACCGTTGGGCTCTAAACCAAGTGTTCAACTCCTTCTCATACTCTGCTGTCATCATTGTGGAAGATGATTTGGAGgTGGCCCCAGACTTCTTTGAGTACTTTAAAGCCCTTCACCCTGTACTGCAATCTGACCCAACTCTGTGGTGCGTGTCTGCCTGGAATGACAATGGCAGGGACGGATACGTAGATCCTGTGAAATCAAGCCTCTTATATAGGACAGACTTCTTCCCAGGGCTTGGCTGGATGTTGCTGAAGGAAGTGTGGATGGAGCTTGAGCCAAAATGGCCAGCCTCATTTTGGGATGACTGGATGCGGCATCCCGATCAGCGCAAAGACCGTTCATGCATTCGTCCGGAAGTCTCTAGAACTTTGACGTTCGGCCGTAAGGGTGTGAGTTTGGGTCAGTTCTATGACAAGTATCTCCGTTTTATAAAACTCAATGCCGAATTTGTGCCTTTTACAAATATAGATCTGTCTTATTTGGAGAAGAAGAAATACGATCAAGCTTTTGAGAAGGAGGTTTACAGCTCTCCTGTTGTGACACTGGAGGAGCTGAAAAATGGGAAGCTGTCCGGGCCGGGCCCGTTTCGGCTGCAGTATTCCAGCCCACAGGATTTTAAAACAGTAGCACGAGGTCTTGGAATCATGGATGATTTGAAGTCTGGAGTGCCAAGAGCTGGGTATCGAGGCGTTGTCAGCTTCTTTTCACAAGGAAAGCGGATCTATATAGCGCCACCTGTTGGTTGGACAAAGTATGATCCAAGTTGGAGTTGATATAGCCTGTGTGTACTGGGGGAAAATCTGTGTAGTCAGTACAAAGGAATTATATTGTAAAAATTGGTCCACGATGTGTCATGGTGCAAATGTGTTCAAAATGTGTTTAGCATCCATGCTCAAAATAAGTTCATTTCATTTGGTCTATATTTGGAAATGTTCATTATGCAGAACATAACAGAGACACTTCAAAATAACAGATTGGAAAAGCAAAGGTTGAAACACGAGACCAAAGAGCATATTGTAGAGTAGTTGATTTCCATATCTCAGGTCaatgctaactttttttttaatggggaGAGAAGAATATATACCTTCAGTGTTTGATATATAGACTTGTTGAGATTGTCACACCAAGTTGCCATCAAATGTGAtttacactgatttatttttttttaaacatgacagaTAATCATCAGAGCCTTGATGCAAATATTCTTTATTCACCAGTCACTTTGCAATCTGAAACCTCTTTAAAGTGCCTTCAAACTTTGATAGCtttgtttaaatgattatatgTGATGTTTGTGCTTAAGTGGTGGTGGATTTTATGTGTTGTTTTGGGTAGAACATGTAgcttttaaatctgtatttgtTGGAGAACATCAACTGGTAGCTTTGATCACAGACTGATGTTATACTAAAATTTTTGGGATTTAATaaattttggggaaaataaagtaaacatttgatatattttaa
>XM_026935119.2
ATCTACTGAATATTAAGCTTATGTGTTCACTATTTCAAAGTTATGCATACTAGTGTAACTGAAAACCTCATCCCCACCCCTTCAGCTTCATATTAGGAATGGTGTTACGTCACCTCCGTGACCTTGGATTTTGGCTTGAAATTCAGCGGCTCGCCAAAGCACCAATGaccttatttaaaaacaatgaacATGTCCTTCTTTGCCTTCCGCCTTTATTACAGCACCACTTCTGTTGACTTCTGTCAGACTTCTAACCCGTTCTCCTAGCCACgcatataattatatttatgtgtaCAGGATATTTCACTTCCTGCCTTATGAGTTGGTTAATGAGAACTTGCACCTCCCTGACACCCTGTTCAGCATATCATACACTTCTGCTGCCCTGACACCCTAAGGTCCAGTTTAGCCATGTTCCGCAAGAAAGGTTCTCTAATTATTTGTGGCGCTTTGTTGTTTATTGCTTGGAATGCCCTTATTATATTTGTTCTCTTGGGACGGTCTCCTGGATATGAAGGAGGCAAGTCTATTTCAGCAGAAAAAGATCCACAAAACAACGACATTGTGGAGAAATTGCTTCATTTAATTAGCTCATTTGAAATGGAACTTGAGTCCCAGAACAAAATCCTTCTCCAGATCCAGAGCCATAAGTCACTGTGggaagaactaaaaaaaaatggcacagcTTTCCGCAGTAAATTAGATACCAGAAGTAATTTTACAAACGAGAGGCATAAATTCCTGTCATCCGGCGCGGTTATTCCCATCTTGGTCATGGCGTGTAACCGAGTGACAGTGAAACGCTGCTTGGACAAACTCCTCGAGTATCGTCCATCACCTGAACTCTTTCCCATCATCGTGAGCCAGGACTGTGGACACACGGAGACCGCTGATATGATCGCCTCATACGGCAGTAAACTGACTCACATTAAACAGCCTGATTTGTCAGAGATCTCGGTGCCTGCAGGCCACAATAAGTTCCAGGGTTACTACAAAATCTCAAGACATTACCGTTGGGCTCTAAACCAAGTGTTCAACTCCTTCTCATACTCTGCTGTCATCATTGTGGAAGATGATTTGGAGgTGGCCCCAGACTTCTTTGAGTACTTTAAAGCCCTTCACCCTGTACTGCAATCTGACCCAACTCTGTGGTGCGTGTCTGCCTGGAATGACAATGGCAGGGACGGATACGTAGATCCTGTGAAATCAAGCCTCTTATATAGGACAGACTTCTTCCCAGGGCTTGGCTGGATGTTGCTGAAGGAAGTGTGGATGGAGCTTGAGCCAAAATGGCCAGCCTCATTTTGGGATGACTGGATGCGGCATCCCGATCAGCGCAAAGACCGTTCATGCATTCGTCCGGAAGTCTCTAGAACTTTGACGTTCGGCCGTAAGGGTGTGAGTTTGGGTCAGTTCTATGACAAGTATCTCCGTTTTATAAAACTCAATGCCGAATTTGTGCCTTTTACAAATATAGATCTGTCTTATTTGGAGAAGAAGAAATACGATCAAGCTTTTGAGAAGGAGGTTTACAGCTCTCCTGTTGTGACACTGGAGGAGCTGAAAAATGGGAAGCTGTCCGGGCCGGGCCCGTTTCGGCTGCAGTATTCCAGCCCACAGGATTTTAAAACAGTAGCACGAGGTCTTGGAATCATGGATGATTTGAAGTCTGGAGTGCCAAGAGCTGGGTATCGAGGCGTTGTCAGCTTCTTTTCACAAGGAAAGCGGATCTATATAGCGCCACCTGTTGGTTGGACAAAGTATGATCCAAGTTGGAGTTGATATAGCCTGTGTGTACTGGGGGAAAATCTGTGTAGTCAGTACAAAGGAATTATATTGTAAAAATTGGTCCACGATGTGTCATGGTGCAAATGTGTTCAAAATGTGTTTAGCATCCATGCTCAAAATAAGTTCATTTCATTTGGTCTATATTTGGAAATGTTCATTATGCAGAACATAACAGAGACACTTCAAAATAACAGATTGGAAAAGCAAAGGTTGAAACACGAGACCAAAGAGCATATTGTAGAGTAGTTGATTTCCATATCTCAGGTCaatgctaactttttttttaatggggaGAGAAGAATATATACCTTCAGTGTTTGATATATAGACTTGTTGAGATTGTCACACCAAGTTGCCATCAAATGTGAtttacactgatttatttttttttaaacatgacagaTAATCATCAGAGCCTTGATGCAAATATTCTTTATTCACCAGTCACTTTGCAATCTGAAACCTCTTTAAAGTGCCTTCAAACTTTGATAGCtttgtttaaatgattatatgTGATGTTTGTGCTTAAGTGGTGGTGGATTTTATGTGTTGTTTTGGGTAGAACATGTAgcttttaaatctgtatttgtTGGAGAACATCAACTGGTAGCTTTGATCACAGACTGATGTTATACTAAAATTTTTGGGATTTAATaaattttggggaaaataaagtaaacatttgatatattttaa

Function

NR:

description
PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00726 MGAT1; alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935118.2 True 2648 mRNA 0.42 3 17583339 17589221
XM_026935119.2 False 2484 mRNA 0.41 3 17583339 17588524

Neighbor

gene id symbol gene type direction distance location
sh3bp5la LOC108277951 coding downstream 2793 17570528 ~ 17580546 (-)
gabbr1a gabbr1,gabbr1a,LOC108277950,LOC108432983,LOC107586826,LOC107683297 coding downstream 14792 17518007 ~ 17568547 (-)
hspb6 LOC108277671 coding downstream 151023 17429752 ~ 17432316 (-)
lin37 lin37 coding downstream 162878 17414024 ~ 17420461 (-)
LOC113539361 NA coding downstream 245445 17328119 ~ 17337894 (-)
rnf183 LOC108277924 coding upstream 4970 17594191 ~ 17599439 (-)
dhx16 dhx16,LOC107704755 coding upstream 10829 17600050 ~ 17619892 (-)
niban1b fam129a coding upstream 56176 17645397 ~ 17674664 (-)
arpc5a arpc5b,arpc5,arpc5a,LOC108277766,LOC108431159,LOC103032016,LOC107599090,LOC107698380 coding upstream 96656 17685877 ~ 17691354 (-)
pla2g4aa pla2g4a,LOC107722605,LOC107693742,LOC107718137,LOC107677770,LOC107594671 coding upstream 105518 17694739 ~ 17709619 (-)
G227786 NA non-coding downstream 93907 17486631 ~ 17489432 (-)
G227755 NA non-coding downstream 176114 17405948 ~ 17407225 (-)
G227640 NA non-coding downstream 275615 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding downstream 277977 17302063 ~ 17305362 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding downstream 419754 17161511 ~ 17163585 (-)
G228131 NA non-coding upstream 485375 18074596 ~ 18074799 (-)
G228188 NA non-coding upstream 828233 18417454 ~ 18418564 (-)
G228483 NA non-coding upstream 1016706 18605927 ~ 18608241 (-)
G228564 NA non-coding upstream 1422203 19011424 ~ 19012679 (-)
G228635 NA non-coding upstream 1759418 19348639 ~ 19348839 (-)
psenen psenen other downstream 144725 17434055 ~ 17438614 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 333185 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 1219003 16354664 ~ 16364336 (-)
G227205 NA other downstream 1265994 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 1418303 16119297 ~ 16165036 (-)
rwdd3 rwdd3 other upstream 799287 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 972201 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 1982452 19571673 ~ 19572614 (-)
G228758 NA other upstream 2119094 19708315 ~ 19708841 (-)
gdpd5b LOC108277648,LOC108433002,LOC103039705 other upstream 4161914 21751135 ~ 21811084 (-)

Expression


Co-expression Network