LOC113539389 (lrrc72)


Basic Information

Item Value
gene id LOC113539389
gene name lrrc72
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16865182 ~ 16878741 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935128.2
CAGCCCATCGGACCTGGATCTGGAATTAGAGAGTGCATGGTGTGTGTCTTGGCAACAGGTTGGCGGTGTGAGACATGGAGTCATGCAGCAAGGAAAACGGTGATCCTTTGCACAGCTTTAAAATTGGCCATGTGAGTGAACTTTATCTTGCAAGAAGGCAGCTCACAGATGTTCCAGATTTGTCCGGATTCACCCAGCTGAGATACATCTGGCTTAATAATAACAGGATAAAGCATATTCATGGCCCTCTATTTCACTGCTGTTTAGCAGAGCTGTACCTCCAGAACAATGAGATTACCTCAATCGCAGGGGCTCTGAGGCACCTGAGCTGTCTGCGAGTGCTGCTGCTTCACAATAACCACCTGCTTAACCTGGAGGAAACAGTGGCTGAGTTGAGGACCATGCAGCACCTCCAAACACTCAATTTGTTCCTGAATCCCTTAACGCAAGATCCCCTGTATCGGAAATACATGGTCCATCACTTACCATTTGTTCAACTGTTAGACAGAAAAGAAgtgagacaggaggagaggaaaCGTGCCtttaaactcttctgtcctgagaGACAGACAATTCTGGACACACTTGCCTTTGGCAGAAGAGCactgaaggaaaagaaaatgactcAGGACACACAGAGAGGTCTGTGGAGCTCCAAAGCAAAGCGCATAAAATGGCCATTTGATGAGATCGAGGACCTCTGTGAGCGCAGGGCCATGCAGAGGTCCATCATGCAGTTCTCTACTCTGGACTGGAGCAGTGTGAGAAGAGCTCAGCAGCAACCCCTGGAGGAGCAGAGTTCAACTGCAGCCAAAATCCTTACAGTCAAATTCAGATAATACACACTGACTTCAAACTGTTGTCTCTTTACC
>XM_034310649.1
agcaaaaccgggaacactgggcctgaggcaggaatacgccctggatgggatgtcagtACATCACAAGTCTATATTAATCCTAagacaggttttaaaaaaattaaagtgggTGTGTGGGTAAAACACTAAAGAGGATGGATCTTTGCCAACTCCTTAAAATAGATTTAGAACAAATTGTACAACTTATTGAAACGTACAGAAGCTCCCCTCAGTGTGAACTTTGCCTTTTCAAGTGAAAGAGAATGCAGtagcacacacacccactgccGGTCTGACTTCCAGTGCAAAAGAACAAGCCTCCTGGCTAAAGGCGACCTGGGAGCAAGTACATCTCCGTGGATTACTTAAAGAATGTCGGCTTACGACACACCAGGAAGCACTATTAAGGGATTAGGAgaaatatgtacattatatagTTCAGGAAAACTGTTAAACAGAGCTCCGTAAAGGCAGTAACATAGgacatttacttttaattctaattctagcattttttttaaataaaaaggctCATGTAAAATGCTGTCTGAGAAAAGCTAAGCagtagatgaatgaataagaAAAGGGTGTGCACTGTCTATGACTCTTTTAATCCACCTGCCTTTAGTAAAGCACTTATTTGGAATCCCAATAGGATCTTAGAGCTTTCCAGTTATAAAGCCCTAAAATACAAAGATTTAGGTATATGATGTGCCTTTTTAACTTATGACACCAGGAGTAATTCAACTgtaataaaactaaaagtgaGACCTAGAAGAGTGAAGCAATATTCACTGCCAAACTCTTTTGAACATTAATTCAAACATTTTAGGTTAAACAGTCCAtgatctcatttaaaatgctgtGTTAGAAAAGCTAAGTAATTAATAGATGCAAATGAATAAGAAAACTGTGTGATACATAAAGCCTTCACATAAAGCCATCCAATTTCACGTCCTAAACGTTTAAAGATTTAGGTATTTGTTTAgtatttattcaatatttaattgTCATTCTCTGCCTGCTACCAAGCAACTCCAAGTATTCAGAAACCTATGACTGGCACCGTATCTGCAATGTACATTGGAGATGAATAGGATAACATGGGAACTCTTAATTTAGTTCATGCCCTACCTATAATAGAGTCCAACACATTCTCTTGTAATGCCATATTCAGATCCTTTTCCCAGAGTGACTATAAAGGCTCAGTAGAATCAGGCTCGTTTTGCTGATTTTTAATAAGCCTTGAAATTGCTCCCTTTAACAAGACACTTCAAGAGCAAGAAGAGGAATTCAGACATACTCTTCAGGTCCGAGCAATATAAAAGTCGAATATAAAAGTAACACAAGATATAGGAAAGTTTAAAACTTTCCTGGAGCTCCTCAAAAGTGGCAAATGTTCCACTGATAAATGCCTGACATCTTAGACAGGCCAAGGTCTTTCCAGTGTCCAAAGCCCCTCTTACTtaaagaaggagaaaataaGAAATTCAGGGCAATAGGAGCTAAAATGGAAAGATGTCTAAGATTAAGAGGTAAACTTACTTGAGACCAGATTTTCAATGAATGACTAACAGCTGGACTGTCAGAAACTTTCTGCAGGGTAAAAGGGACATGCAAGTGAAAAGAAACAGGCTTAATGGAAGCAGCCTCAGTTTGGACACTGCTTAGCACGCCCTGTGTGttcctctgcacacacacacagcatgaccAATCTAATAATCCTATAGTATTAGCAGCCCAATCTTAGGCTTAAAAAAATCGGCAAGGAGTGTATGTTCAGCGAAATGTGACTTCTTTGGCGTTTAGGCACATTCTCGTGAAGAACACACTGTGACTGCTTtgcatttgttttgattttccTGAGGGTCAaaatgagtggaaaaaaaaaccacaatgtgTGAGGTCCAGCATGGATTTATTTCCTTGGAGAACATTTTACAGGGCAAACTTCTCACAAGAACACGTTAAACTCATTTGACAGTAAGGATGCTGCATCTGAATCAAATTTAGCTGGGTTTTTCTATCATTCAGTATATGATGTATGATTGTATGcatgtttttccaatttttttatactgattcactatataatataatcactgTAACAGATAATAGAACAACAATTGGTGATGAGAGAATGACAGGACGGAAGAAATGAATATAGAAACACTGGTGTTGGGGTAAAATCTATATACTGTACGTATGTCATAATTTTTCTAAGAGTGGTGATCAACTAGTATTTGAGGGAAATGTGCACCCTCTTGTGGCAATAACATCTCATTGTGAATGAATCCCCATATACTTGAAAAAAACTGGAGTAATTTTGTGTAAACTGTAAGTATGTGACTgaatacgaatacattattcataatGAGCAGATAATGtcttctaaacagatacagatatgaataggaggtgcacttttttttagaaagcttgccaaaaAGGTTCACAGAACAACAAAAACTATGTGAACGGGAggttttttacatttatgtggGTGCCAGTGAGTCGATTACCATGGAcagactttcattcattcatctttagtaactgcctggtcaagATTATTGCGGTTAAATTCAGTTGcaagtatttttatattttggaaaatagtacaaactaaatttgttagaataTATCACAGgcagatacaaacaaaaatgctaacAGGGTaagtagaatttaaaaaaacagtcttgTGCACATGTCTAGTTGAGAGCAATTATggactcgagtgatgtagctgaggttgaggaaccacttcaagtttaaataaaaaacagatacagatatctGGAGCACAAACAGATGCAGATTcagatacagacacaaatatgaatatttggagcacaatacagatacagattcagatacagatataattacagatacagaaacatatatttggagcactgaacagatacagatagtgacaTTGCTCTTCTTCAGGTCCCACTCTGGGTTTAATGGTTCACTTACCCATCAGAAATCTGCTCTCAGCCTTAATAGTCAAGTTACTCACTCTAGATTGTCttactgtgaacacacacaactTTGTTACCAGGTGCATGGTGTGTGTCTTGGCAACAGGTTGGCGGTGTGAGACATGGAGTCATGCAGCAAGGAAAACGGTGATCCTTTGCACAGCTTTAAAATTGGCCATGCAGCTCACAGATGTTCCAGATTTGTCCGGATTCACCCAGCTGAGATACATCTGGCTTAATAATAACAGGATAAAGCATATTCATGGCCCTCTATTTCACTGCTGTTTAGCAGAGCTGTACCTCCAGAACAATGAGATTACCTCAATCGCAGGGGCTCTGAGGCACCTGAGCTGTCTGCGAGTGCTGCTGCTTCACAATAACCACCTGCTTAACCTGGAGGAAACAGTGGCTGAGTTGAGGACCATGCAGCACCTCCAAACACTCAATTTGTTCCTGAATCCCTTAACGCAAGATCCCCTGTATCGGAAATACATGGTCCATCACTTACCATTTGTTCAACTGTTAGACAGAAAAGAAgtgagacaggaggagaggaaaCGTGCCtttaaactcttctgtcctgagaGACAGACAATTCTGGACACACTTGCCTTTGGCAGAAGAGCactgaaggaaaagaaaatgactcAGGACACACAGAGAGGTCTGTGGAGCTCCAAAGCAAAGCGCATAAAATGGCCATTTGATGAGATCGAGGACCTCTGTGAGCGCAGGGCCATGCAGAGGTCCATCATGCAGTTCTCTACTCTGGACTGGAGCAGTGTGAGAAGAGCTCAGCAGCAACCCCTGGAGGAGCAGAGTTCAACTGCAGCCAAAATCCTTACAGTCAAATTCAGATAATACACACTGACTTCAAACTGTTGTCTCTTTACC
>XM_034310650.1
TAAACAAAACGCCACCATGGGATACCGTGTGCGGTTTTGGACGCGTCCGTAACATCTGGCCTGATGTGACTGGGTTATTTGACGTCATCGGTAAAAACTAGGTCATGTTTGGGAGCAGAAAATagtgaaGTGCATGGTGTGTGTCTTGGCAACAGGTTGGCGGTGTGAGACATGGAGTCATGCAGCAAGGAAAACGGTGATCCTTTGCACAGCTTTAAAATTGGCCATGCAGCTCACAGATGTTCCAGATTTGTCCGGATTCACCCAGCTGAGATACATCTGGCTTAATAATAACAGGATAAAGCATATTCATGGCCCTCTATTTCACTGCTGTTTAGCAGAGCTGTACCTCCAGAACAATGAGATTACCTCAATCGCAGGGGCTCTGAGGCACCTGAGCTGTCTGCGAGTGCTGCTGCTTCACAATAACCACCTGCTTAACCTGGAGGAAACAGTGGCTGAGTTGAGGACCATGCAGCACCTCCAAACACTCAATTTGTTCCTGAATCCCTTAACGCAAGATCCCCTGTATCGGAAATACATGGTCCATCACTTACCATTTGTTCAACTGTTAGACAGAAAAGAAgtgagacaggaggagaggaaaCGTGCCtttaaactcttctgtcctgagaGACAGACAATTCTGGACACACTTGCCTTTGGCAGAAGAGCactgaaggaaaagaaaatgactcAGGACACACAGAGAGGTCTGTGGAGCTCCAAAGCAAAGCGCATAAAATGGCCATTTGATGAGATCGAGGACCTCTGTGAGCGCAGGGCCATGCAGAGGTCCATCATGCAGTTCTCTACTCTGGACTGGAGCAGTGTGAGAAGAGCTCAGCAGCAACCCCTGGAGGAGCAGAGTTCAACTGCAGCCAAAATCCTTACAGTCAAATTCAGATAATACACACTGACTTCAAACTGTTGTCTCTTTACC
>XM_034310651.1
TAAACAAAACGCCACCATGGGATACCGTGTGCGGTTTTGGACGCGTCCGTAACATCTGGCCTGATGTGACTGGGTTATTTGACGTCATCGGTAAAAACTAGGTCATGTTTGGGAGCAGAAAATagtgaaGTGCATGGTGTGTGTCTTGGCAACAGGTTGGCGGTGTGAGACATGGAGTCATGCAGCAAGGAAAACGGTGATCCTTTGCACAGCTTTAAAATTGGCCATGTGAGTGAACTTTATCTTGCAAGAAGGCAGCTCACAGATGTTCCAGATTTGTCCGGATTCACCCAGCTGAGATACATCTGGCTTAATAATAACAGGATAAAGCATATTCATGGCCCTCTATTTCACTGCTGTTTAGCAGAGCTGTACCTCCAGAACAATGAGATTACCTCAATCGCAGGGGCTCTGAGGCACCTGAGCTGTCTGCGAGTGCTGCTGCTTCACAATAACCACCTGCTTAACCTGGAGGAAACAGTGGCTGAGTTGAGGACCATGCAGCACCTCCAAACACTCAATTTGTTCCTGAATCCCTTAACGCAAGATCCCCTGTATCGGAAATACATGGTCCATCACTTACCATTTGTTCAACTGTTAGACAGAAAAGAAgtgagacaggaggagaggaaaCGTGCCtttaaactcttctgtcctgagaGACAGACAATTCTGGACACACTTGCCTTTGGCAGAAGAGCactgaaggaaaagaaaatgactcAGGACACACAGAGAGGTCTGTGGAGCTCCAAAGCAAAGCGCATAAAATGGCCATTTGATGAGATCGAGGACCTCTGTGAGCGCAGGGCCATGCAGAGGTCCATCATGCAGTTCTCTACTCTGGACTGGAGCAGTGTGAGAAGAGCTCAGCAGCAACCCCTGGAGGAGCAGAGTTCAACTGCAGCCAAAATCCTTACAGTCAAATTCAGATAATACACACTGACTTCAAACTGTTGTCTCTTTACC

Function

symbol description
lrrc72 Orthologous to human LRRC72 (leucine rich repeat containing 72).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935128.2 False 872 mRNA 0.48 10 16865182 16878741
XM_034310649.1 True 3863 mRNA 0.39 9 16865182 16875333
XM_034310650.1 False 943 mRNA 0.48 10 16865182 16876332
XM_034310651.1 False 969 mRNA 0.47 10 16865182 16876332

Neighbor

gene id symbol gene type direction distance location
tspan13a tspan13 coding downstream 7663 16853179 ~ 16857519 (-)
crybb1l3 LOC108426910,LOC103042748,LOC106924296,LOC104922853 coding downstream 340540 16520890 ~ 16524642 (-)
unc119a unc119,LOC103043060,LOC108431312,LOC107704800,LOC107757471,LOC107548572 coding downstream 346631 16501564 ~ 16518551 (-)
slc46a1 slc46a1 coding downstream 385535 16474935 ~ 16479647 (-)
vtna LOC108277704 coding downstream 399314 16460186 ~ 16465868 (-)
arl4aa arl4a coding upstream 227849 17106590 ~ 17109061 (-)
si:dkey-30e9.6 NA coding upstream 230782 17109523 ~ 17113260 (-)
LOC113539219 LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding upstream 263604 17142345 ~ 17145261 (-)
tmem106ba tmem106b,LOC107730846,LOC107683194 coding upstream 268194 17146935 ~ 17155966 (-)
LOC113539359 LOC108277878 coding upstream 383835 17262576 ~ 17275219 (-)
G227405 NA non-coding downstream 90107 16774853 ~ 16775075 (-)
LOC117599111 NA non-coding downstream 141990 16717249 ~ 16723192 (-)
G227319 NA non-coding downstream 221097 16643860 ~ 16644085 (-)
G227296 NA non-coding downstream 290990 16573956 ~ 16574192 (-)
G227291 NA non-coding downstream 298472 16566505 ~ 16566710 (-)
G227440 NA non-coding upstream 34218 16912959 ~ 16913160 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding upstream 282770 17161511 ~ 17163585 (-)
G227640 NA non-coding upstream 407602 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding upstream 423322 17302063 ~ 17305362 (-)
G227755 NA non-coding upstream 527207 17405948 ~ 17407225 (-)
si:dkey-118k5.3 LOC108277747 other downstream 500846 16354664 ~ 16364336 (-)
G227205 NA other downstream 547837 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 700146 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 1020399 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 1464405 15365359 ~ 15400777 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 352015 17230756 ~ 17250154 (-)
psenen psenen other upstream 555314 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1509767 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1682681 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 2692932 19571673 ~ 19572614 (-)

Expression


Co-expression Network