tspan13a (tspan13)


Basic Information

Item Value
gene id tspan13a
gene name tspan13
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16853179 ~ 16857519 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935156.2
CGCGTCATTAGGAACGCGCAGTAACTTACCTTTCACTCTTCTCCTCCCTTTTTACCTGGAGGAACAGCAGGAGTTCAACATAAACAgcagaaataaagttttaaagatGGCGTGTGGTGGATTTGTTTGTTCGAAATACACTCTTTGCGCGTTGAACATTCTTTATATGTTGGTGAGTTTGCTCTTAATAGCAGGGGCAGCCTGGGGCAAATGGGTCGATCTGGTCTCCAGCTTTCGTGTGGTCGCAGCCATCATCGCAGTGGGTGTCTTCCTCTTCTTGGTAGCAATGTTGGGTCTTTGTGGAGCTATGAAGCATCACCAAGTCCTCTTGTTCTTTTACATGTTCATCCTTTTCATGGTGTTCATTGTGCAGTTCTCAGTGTCATGTGCAAGCTTGGTCATCAATAAGAAACAGCAGGAATCACTCCTGGAGATCGGATGGAATAAGTCTGAGGCCGTGCAGCACGATTTGGAGAGGTCATTGGACTGCTGTGATTTCTCTGAGGTCAACTACAATGGAACATGTGAAGCTAGATGTTTTGGAGCTTACAATTGCAAGCCTTGTTCAGTAAAAATTCAGGAGTATGCTGATGATGTACTGCATTTTGTGGGAGGAGTGAGTTTGTTCTTCAGTTTCACAGAGaTCCTGGGTGTTTGGCTAACATACAGATATAGGAATCTAAAAGACCCTCGTTTAAATCCTCGTGCGTTCCTTTAAGAAGGTTCTTATTTTCAGTTTATACATGTTAAGATGCTGCTCAGTATTTATAATCACAGAGCAAACTGCTATTTTACTGTGCTTGACTCCTAATATTTCCTCCTTGACTCCTGATATTTTACATGATGAATCAcaacaaaatcttttttgttcacttttttttgtggttaaaCTGAATactgtgcattatttttaatcGTAACAGCTATTGTTTTAGCATTAGACTTTCATTAGTGTTGGAAATGTAACTCGTAATTATTTGTGCTTAAGTGTTctactgaaaaatatttttaaatagtcaTAAGGCATATCAGTGAATTGGTTTAGATCAACTAGCTAAAAACAATCACAACAGTAATTACAGAattggaaatgtgtgtgttattacaaaTTAGACAAATAATGTTATGAAAATGTACACTCTCTGTAAAAAGCTAATGAGACGACATAAAAAGGAGGCGTTAAACTGGACTGACTTGATAAACCAGTGAAACACCAAACTAATAATAACTGGTAATGAAGGTATAGTGATGAAAGACTGACTGGTCTTTGTGAAGTCTAAAACTCAACACTTTATTGATTTGTAAATTAAACCACATGGAAAAACAagtttttgtgcagtttttttccccccttttgtGATAACTGAAAGTGGAAACTGCTCATTACCTTCTCATCGTCATACTTCCTCAACTTTTACTTGGCCAAGTTAGCACACAGGTATTTGACCTCAGCCCAGAGACACACCATCAGTGGCCACGTGGTTGCACTCTGAACAGGATATGAGCAGGAACTGCTACGTCATTTATTTGGATATGGTTGAGCCATTGCACGGAGATCTTACCCAACCAGATAAACACAGATGACTGCTGAATGTGTCTACAGTGCTTTGTATGAAGTAATCTGTATTAGCCACATGGAGGAggaaatttaactttttttgtagGTAGAACTACAGGAATGCCTAATAGGCTGAGTTGTGAGTTGTGATACACGTATACTGTCACCTGCTGTTAAAAATACATTAGCATTTCTGTAATGTCATAGCAGGTTGCACACATTGTTTAActggttttaaaatgtgtacaatagTCATGTTTACCTGTATAGTATTATACCAAATGTAGTGACCACTCTGAACATAAAAGCCCCATAATGtcttacaaatttatttttcagttactTTGTGTAAATCTGTCACTTCTGAATTACACTCATTTTGAACAATGA

Function

symbol description
tspan13 Predicted to enable calcium channel regulator activity. Predicted to act upstream of or within regulation of calcium ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: tetraspanin-13-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935156.2 True 1948 mRNA 0.38 6 16853179 16857519

Neighbor

gene id symbol gene type direction distance location
crybb1l3 LOC108426910,LOC103042748,LOC106924296,LOC104922853 coding downstream 328537 16520890 ~ 16524642 (-)
unc119a unc119,LOC103043060,LOC108431312,LOC107704800,LOC107757471,LOC107548572 coding downstream 334628 16501564 ~ 16518551 (-)
slc46a1 slc46a1 coding downstream 373532 16474935 ~ 16479647 (-)
vtna LOC108277704 coding downstream 387311 16460186 ~ 16465868 (-)
myo1cb myo1c,LOC108277898,LOC107756890,LOC107743634 coding downstream 436805 16366194 ~ 16416374 (-)
LOC113539389 lrrc72 coding upstream 7663 16865182 ~ 16878741 (-)
arl4aa arl4a coding upstream 249071 17106590 ~ 17109061 (-)
si:dkey-30e9.6 NA coding upstream 252004 17109523 ~ 17113260 (-)
LOC113539219 LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding upstream 284826 17142345 ~ 17145261 (-)
tmem106ba tmem106b,LOC107730846,LOC107683194 coding upstream 289416 17146935 ~ 17155966 (-)
G227405 NA non-coding downstream 78104 16774853 ~ 16775075 (-)
LOC117599111 NA non-coding downstream 129987 16717249 ~ 16723192 (-)
G227319 NA non-coding downstream 209094 16643860 ~ 16644085 (-)
G227296 NA non-coding downstream 278987 16573956 ~ 16574192 (-)
G227291 NA non-coding downstream 286469 16566505 ~ 16566710 (-)
G227440 NA non-coding upstream 55440 16912959 ~ 16913160 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding upstream 303992 17161511 ~ 17163585 (-)
G227640 NA non-coding upstream 428824 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding upstream 444544 17302063 ~ 17305362 (-)
G227755 NA non-coding upstream 548429 17405948 ~ 17407225 (-)
si:dkey-118k5.3 LOC108277747 other downstream 488843 16354664 ~ 16364336 (-)
G227205 NA other downstream 535834 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 688143 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 1008396 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 1452402 15365359 ~ 15400777 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 373237 17230756 ~ 17250154 (-)
psenen psenen other upstream 576536 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1530989 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1703903 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 2714154 19571673 ~ 19572614 (-)

Expression


Co-expression Network