sgcg (sgcg)


Basic Information

Item Value
gene id sgcg
gene name sgcg
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 15921491 ~ 15933469 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935157.2
TGCACGAACTTCACTTGCTGAACCAGAACTCATGCTTAGAGAGTGACTCACAGATGTATCTGAGCCAGAACAGGGGCATGTATCTGACGGttctttccccttttttcctctctcctgtGGAGACACACTGAACCTCTCACTAACAGTCTCAATACTGACAGCACACAATACTCAAATGGTCCTCTGTTGAGCTGTTGTATAGCTATGAGAAGTTGATTCGAAATTGGAGAGGAGAATGTTGAGAGGCGGAAGTAGGGGTGAGTTGCTTCTCTTCATGTTTAGCTGGAGCTGATCCAGAGTCAGATTTATGAGAGGCAGCTGCTGAGGGCTTGACGGACAGACGAGTGTAGGGATTCCTGTGTTGCTGCTGCCGCTGCACAGAGGACGGCCAGGCTGTGTGTCAGTGCACAGAAACAGTAGCAAGGATGGTTCGTGAACAATATGTCAGCACTACAGAAGAGGCTGGTGTGCCAACGCCAGTTTCTGACTCCATCTATAAGATTGGCATCTATGGGTGGAGGAAACGTTGCCTTTATCTATTTGTCCTGcttctcatcatcatcctgGTGGTGAATTTTGGCCTTACAATCTGGATCCTGAGAGTGATGTGGTTCAATACAGAAGGCATGGGATACCTCCAGGTCACAGAAGATGGTGTGAGGTTGGAGGGAGAGTCTGAGTTTCTTTTCCCACTTTATGCTGAAGAGATTGACTCCAGAGAGGACTCAGCTCTGCTGGTGCACTCCACTGATAATGTGACTCTCAATGCCCGCAATGCCAATGGAGATGTAACAGGAAGTATGTCTGTAGGTCCAGGACAAGCCAAGGCCTTTGGGCAACATTTTACAGTCAACTCAGATGAGAAGACTCTGTTTTATGCTGATGAAAAAGAAGCAGTTGTGGGAACAGGGAAACTCCGAGTTACAGgCCCTCAAGGTGCACTTTTTGAGCACTCTGTTGAGACGCCATTGGTCAAAGCAGAGCCTCTGAGAGACCTTAGGTTGGAGTCTCCAACCCGGTTTTTGAGCATGGAAGCCCCCAAAGGTGTTTACATCAAAGCCTTGGCAGGGAATGTAGATGCTGAATCAAGTCTGGATGTTATTTTGCACTCAACTGAGGGTCTTCTGGTTTTAGATGCTGAGACCATTCGTCTTCCCAAGTTACCTGTGGGTGAAGCAGGATCACCAGGTGACTCTCAGGGGCTGTACAACAtgtttgaagtgtgtgtgtgccccagCGGCAAGCTATTCCTTTCCAGAGCAGGTCTCTCCTCCACCTGCAATGAGAGCCAAGAGTGCTGAAGTCTATAGCATCTGTAGACTGATATTCATGTTATAATGATTTGGTTGGAGATCTCCTGTTGAATCTCCTGCAGAGATCTCTTGTTGCAGAATTCTCAGATGGAGCGCAAAAGCACAATTTTGCTACTACAGTGACTTcacaaaaaacaagaagaagcaCATCATTCTCAGGTGGTGAGCGTTTTAGCCTGAGTACATTATGTACCTGGAATACATCTGTTTCAATGTCACCAATATTTGCAGTACCATTGTTTGTGAGTGGTAATTATCTTTCACTTTTATTGCcgttttttctcttttaccaACCTAGGCTGGGCAAAAAGGGGCTGGTTACCAGCGTACATCCTATGCAATATGATTTTATAGTGCAATACCCAAAACTTATGTAGTAAATATGATTACTGTTAAAGGAAGTTCAGCAGCAAAACTATTGTTTTATatgtcaacaacaacaaaaaaaattgaattgaatctatCTTGCTTATTTAAAAGTGTAGCCGTACAAAGTTAGCTATCATAATATGGGCCTAATGCAATATTATCTTAATTCACATCAGTCTAATTCCCAATCATGATTTTACAGCTAAATTAACTGAGCAGTGTTGAGATTTATATAAACTAATATCGGTAAAATCGTTTTTGCAAAAATGAAGATGGTCCAATTAAATCCAGCcacaacattttttgtttaattgattGAGTAGTCTTTGATGTGTTTTGTGAGGGTTTTTAGGTTGTCATTTGAGTACCAAAAACAATGTGTGatgtatttttgtgttaataaaGTATTTGATCTTCATCCTGGTTGA

Function

symbol description
sgcg Predicted to be involved in cardiac muscle tissue development and heart contraction. Located in sarcolemma. Is expressed in musculature system and somite. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2C and type 2 diabetes mellitus. Orthologous to human SGCG (sarcoglycan gamma).

NR:

description
PREDICTED: gamma-sarcoglycan

GO:

id name namespace
GO:0042383 sarcolemma cellular_component
GO:0016012 sarcoglycan complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12564 SGCG; gamma-sarcoglycan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935157.2 True 2110 mRNA 0.43 8 15921491 15933469

Neighbor

gene id symbol gene type direction distance location
tnfrsf19 tnfrsf19,LOC104951695 coding downstream 33656 15869831 ~ 15887835 (-)
LOC113539181 LOC108277680 coding downstream 113734 15796595 ~ 15807757 (-)
gbe1b gbe1,gbe1b,LOC107752276,LOC107724947 coding downstream 326726 15488961 ~ 15594765 (-)
slc7a1b zgc:63694,LOC108278095,LOC107752277,LOC107699226,LOC107555275,LOC108426967,LOC107592659,LOC107728169,LOC107699183 coding downstream 440732 15464687 ~ 15480759 (-)
mtus2b LOC108277456,LOC108426966,LOC107670531,LOC107593466 coding downstream 459955 15424888 ~ 15461536 (-)
slc37a4a slc37a4,slc37a4a,LOC107670393,LOC107593481 coding upstream 6745 15940214 ~ 15949223 (-)
ptgir ptgir,LOC107567267 coding upstream 38693 15972162 ~ 16004372 (-)
LOC113539270 NA coding upstream 74812 16008281 ~ 16015596 (-)
ppm1na LOC108277626,LOC108426978 coding upstream 83616 16017085 ~ 16023991 (-)
ap2s1 ap2s1 coding upstream 175042 16108511 ~ 16116831 (-)
G226864 LOC108277678,LOC108277679,LOC108426971,LOC103047626 non-coding downstream 75321 15818624 ~ 15846170 (-)
G226831 NA non-coding downstream 84000 15809718 ~ 15837491 (-)
G226657 NA non-coding downstream 440628 15424869 ~ 15480863 (-)
G226492 lpar6a,lpar6,LOC108278365,LOC107701423,LOC107713545,LOC106592078,LOC107708689 non-coding downstream 734483 15184409 ~ 15187008 (-)
G226417 NA non-coding downstream 764286 15156904 ~ 15157205 (-)
G226980 LOC108278227 non-coding upstream 96778 16030247 ~ 16030964 (-)
LOC117599083 NA non-coding upstream 157845 16091314 ~ 16092507 (-)
G227002 NA non-coding upstream 170264 16103733 ~ 16106366 (-)
G227207 NA non-coding upstream 384228 16317697 ~ 16317922 (-)
G227210 rilp non-coding upstream 424867 16358336 ~ 16438387 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 76708 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 520714 15365359 ~ 15400777 (-)
gab2 gab2,LOC107561751,LOC107724943,LOC107593477 other downstream 1330955 14540477 ~ 14590536 (-)
zmp:0000001236 maml2 other downstream 1384655 14487493 ~ 14536836 (-)
abcg1 abcg1,LOC108277612,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC107677096 other downstream 1877717 14024245 ~ 14043774 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other upstream 185828 16119297 ~ 16165036 (-)
G227205 NA other upstream 383182 16316651 ~ 16317345 (-)
si:dkey-118k5.3 LOC108277747 other upstream 421195 16354664 ~ 16364336 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 1297287 17230756 ~ 17250154 (-)
psenen psenen other upstream 1500586 17434055 ~ 17438614 (-)

Expression


Co-expression Network