pdgfd (pdgfd)


Basic Information

Item Value
gene id pdgfd
gene name pdgfd
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1798680 ~ 1813081 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943282.2
cgcgcgcggtACACACCTCACCGAGTGAAGCTGGAAAACGGTTTCCTTTCCCTCCCGAACATTTCCCCAGCAGTCTGCATGTGTGAGGAATGCAAACTATTCGAGGTGGCTTCGCATTATCAGCGGAATGACGCAATAACTTTGGCGCTGGTCTGAAGTTTTGGAAGTTTCCTCCAGTCCGCGTGAGTGAGTAGTGTATGCGCGCGCACGGACGCACggacgcacgcacacacgcaaaTACGCAAATACCGGGACCCGGACAAAGCAGAAACGCGCGCAGCCAAACCCGGACCTGCAACTGGATCTAATCACTCCACACCGCTCCTCGTGCGCtatgtaaaaaagaaagaaaaaaaaaaagttgcgtGAATTGGAATCATTTAAAGCCCGAGAGCGAGGCACCTCGCACGCGCATGAGGTCGGCGGCGGTGATCTGGCGGGCCGCGCGCCTGCTCGCTCTCTCGCTCGTGTGTTTGCCGCTGGTCGGTGCGCGCGGTGCTCAGGTGCGAGCCGCCACTTCGCCGCGCGCGACAAACACGCGCCGAGAAGATTTGTTCTGCCAGGAGAAGGTCGTCATGGTGACAGCAGGTGGCCAGATCCAGAGCCCACGGTACCCAAACGCCTACCCGCGCAACCTCCTGCTGACGTGGAAACTGCTGGCCCCGCCCTTCACACGTGTTTTCCTGGAGTTTGATGGGAGGTTTGGTTTGGAGGAGCCTGAGAACAACATGTGCAgacaTGATTTTGTGGAGGTTGATGACATTTCGGAAAGCGGCACCATCACTTGGGGTCCATGGTGTGGACGGAAAGCCCCGAGTCCCATCACATCCAAAAACAACATGATCAGTATCACGTTCAAATCTGATGACTTCTTTGTCGCCAAGCCGGGATTCAAACTCTGCTACTCCCTGCTGGTTGATGCTCCTCCGTCTTATTTGAATAACTTAGAGACTGTCACAGCTGTGTCGGAGGATGTGTCTGTCTCTAATGCTCCATTATCAGCTGATGCTTTGGATGATATCATTGCGGGGTTCAGTACAGTGGAGGAGGTTTTTAGACACCTGAACCCGAACACCTGGAGACAGGACCTGAACTCTATCtacacacatacgcatacaTACCAGTACATACCGCGGAGCTACTCTGCCAACCGTGCAAACAAAcTTGATCTGGATCGTATGTACGAGGAGGTGAGGCTGTACAGCTGCACACCACGTAACTTTTCCATAAATCTGCGGGAGGAACTGAAGGCCACCAATGCAGTGTTTTTCCCACGATGCCTCTTGGTGAAGCGCTGTGGCGGGAACTGTGCCTGTGGGACAGAGCATTGGAACTCCTGCACCTGTAGCCCTGCCAAAACAGTCAGCAAACTTCATGAGgtgctgaAGTTCTCTCCAGGACAAAATTTCTACAAAAAGAAAACCAGAGCACGCTGGGTTCTCGAGGAAATCAACCTACAGCATCATGAGcaatgcgagtgtgtgtgtcactcacgGCCACCTCGAtgagagacacacatacactcatatacacacacacacacacacacacacacacacacacagacacacacatccactcaGTATTTCAAACTGTAACTGATGTAGCTAATGTATCTTTCTCTGTATGTCTGTACTTTTGTAGTTTTTATCcgtcttcacacacactattatttatttctgttttatgtttattttcttgcaaacaaagaaaatggGACAAAGCCGATCTAAGACTGTTCCtactttttcctcacacacacacacacacacacacacacacacacacacattccagtcATCTCCCTGGTTCAGGAAGATGAAAGTAAAGgccagaggtgtgtgttttcactggTTATCCAAAACAGTACATTCCCCTCATACCAGCCcttcctcacacacaaacacacacacacacatacacgcacactgCGGAAAGTATGATTGGTGTAGCTCTGTTTGTGAGATTTTGGGTTCCATTTTGGTTAAACCCCACACTCAGAttcaaatattttctgtttcatttgtcttaaaaacacataataaacagattttcaaGGTTCAGCATTCA

Function

symbol description
pdgfd Predicted to enable growth factor activity and platelet-derived growth factor receptor binding activity. Predicted to act upstream of or within platelet-derived growth factor receptor signaling pathway. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in prostatic hypertrophy. Orthologous to human PDGFD (platelet derived growth factor D).

NR:

description
platelet-derived growth factor D-like

GO: NA

KEGG:

id description
K05450 PDGFC_D; platelet derived growth factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943282.2 True 2070 mRNA 0.50 7 1798680 1813081

Neighbor

gene id symbol gene type direction distance location
fzd4 fzd4 coding downstream 108096 1682765 ~ 1690584 (-)
LOC113544557 parl coding downstream 201208 1592593 ~ 1597472 (-)
cldn15lb cldn1 coding downstream 210225 1581397 ~ 1588455 (-)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 217651 1560569 ~ 1581029 (-)
sagb LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819 coding downstream 240376 1546943 ~ 1558304 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 110587 1923668 ~ 1946156 (-)
cwf19l2 cwf19l2 coding upstream 136900 1949981 ~ 1965960 (-)
trnag-ucc_22 NA coding upstream 156331 1969412 ~ 1969483 (-)
naalad2 folh1b,LOC107670141,LOC108412465 coding upstream 206227 2019308 ~ 2035377 (-)
tyr LOC108277956 coding upstream 239708 2052789 ~ 2059593 (-)
G218773 NA non-coding downstream 11706 1777746 ~ 1786974 (-)
G218768 NA non-coding downstream 28228 1770215 ~ 1770452 (-)
G218720 NA non-coding downstream 116593 1624484 ~ 1682087 (-)
G218734 NA non-coding downstream 122466 1675764 ~ 1676214 (-)
LOC117599072 NA non-coding downstream 181742 1603411 ~ 1616938 (-)
G218825 NA non-coding upstream 104632 1917713 ~ 1918020 (-)
G218840 NA non-coding upstream 136197 1949278 ~ 1949551 (-)
G218850 NA non-coding upstream 164961 1978042 ~ 1980907 (-)
G218950 farsb non-coding upstream 414414 2227495 ~ 2266728 (-)
G218972 NA non-coding upstream 467172 2280253 ~ 2280779 (-)
trnag-ucc_18 NA other downstream 301269 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 301574 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 643980 1154410 ~ 1154700 (-)
G218265 NA other downstream 664662 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 695796 955480 ~ 1102884 (-)
scaf4b LOC108411133 other upstream 468320 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 799776 2612857 ~ 2629901 (-)
G219642 NA other upstream 1074826 2887907 ~ 2963350 (-)
G219651 NA other upstream 1094245 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 1914296 3727377 ~ 3807114 (-)

Expression


Co-expression Network