cldn15lb (cldn1)


Basic Information

Item Value
gene id cldn15lb
gene name cldn1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1581397 ~ 1588455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943401.2
caaaaatcaccaGTGATTCTCagagacacacccatctgtcacACTCTGTACCAATATGGCTtactggaaaaaacaaacagtttcaGACAAGCTGTCCTCAAATGTTGTGATGACGTCATACTGTATGATCaagtttctgattggctgatcaacAAACCTAAGCTCCGCCCTCAGGAACATGTGTCACTCTTCAAACTTGTGATCACACGGAAAAGGCAAACCATAAACGTTTCGAGGACACACACTTAATCGAAACCTAGATTCACTTCCTCTTgcatcatcatcttcaccatcaTTTTCTGCCTGCCTGTTGTCGTGGTAACCACGGGATGGTCATAGGTTTATGACTTTATGGCCCTTCTGAGTAAAGTCCTCTTAAaactctgtctcacacacacacactcactcactcactcacacacactcacacagaggaGACGGTTGGACTGTTTGCACTTTTGGGATTTGTTGTAAATACGCTGTTTTTATGCTGTAGCTGTAGTGTGTTATTAAGAGTGTGTTGTTCTCtaggacagtgtgtgttagctggTTGTATCtgttagtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagctctgtgGTAGCATTAGCCTGTAGATTTGTACTTAATAACACTCAGGGCCTGTTAGTGCACTgcgctgcagtgtgtgttagcgtTATAGTAGCATTgctgaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgagtGATCATGTCAATGGCGGTGGAGTTACTGGGCTTCTtgctgtgtgtgggtgggtggctGCTGAGCGGCGTGAGTTTAGCGAATAACTACTGGCGTGTATCGTCGTACGTGGGCAGCGTGGTCATATCCACACGGCAGTATGAGAACCTGTGGCAGGCGTGTGCGGAGGCCAGTACAGGCATCACGAACTGCAGACTGTTCGAGTCCATGCTCGCACTGgatgcctACGTGCAGGCATGTCGTGCTCTGATGATTATAGCCCTGCTGCTCGGCCTCGCCTCGATCCTCCTCTCTGTCCTGGGACTGAAGTGCACTAAACTGGGCGGCATGAAGGAGACGAGTAAAGGACGTCTCACACTCACTGCTGGATTGCTGTTCATACTGTCtggtttgtgtgtgttgacgGCTGTATCGTGGTACGCATCACGCATCATTCAGGAGTTTAATGACCCCTTTTACGTAGGAACGAggtctgaGCTGGGTACCGGTCTGTATTTGGGTTGGGCCGCAGCGGCGTGTGTGATTATGGGAGGAGCCATGCTGTGTGGatcattcaagagagcaagatCACCCAAACCCTCAGGtggttACAGGTATAAGTCGTCAGCCAATCAGCAGATCTATAAAACAGGTGCTCAGTCAGAGAGCAGCAGCTCCAGAGCGTACGTTTGAACCCAGCACCTGTaccacactctacacacactggaAATGAAAATTGTCTATAAAACCGAAAcataccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgagtgtgtgagtgcttgTGAGTGTGTTGTTTGCGGTGTTACACATGATGTCTTTGTGCTGTTAATGTGAATAATGTTTGTGAAATTGTGGGCTCTTGCCTTTGCCTTTATGAATTagagtgtttctgtgtgtgtttttttttttttgagggggCTTCACATTTTTtagtaataacaacaataaattatatttttataacttcTGTTTTGGGTAATTAGAGTAATTGATAATTtgggttaattttttttctatatatggAGTTGGATAATATTTTGGAATTTGACAGAATAAGGAATAAATTGAAATTGTGCATATTTCTTTTATTGTGTGTGATATGAATAAATCAGAATGGATAAACACGCCA
>XM_026943402.2
ACTGACCCAAAGCCAATATTAACACAGTGACTTACATGACTCGAGACATTGAGACAGAATCACACACCGTTTAGCACTCGGGAGACTCACAGAGCAGTGATGGCGGAGGTAATGGTGGAGGTGATGGGCGTGGTCCTGGCCATTATCGGTTGGTGTTTGGAGTCGAGCAGCACAAACTCAGCCGTGTGGCGGATACACACCAAAGCCGACTCAGTGATGAGGAGCAGCTCACAGTATGAAGGCCTGTGGAAGAGCTGCAGCTCCAGCAACGTGGGGGTGCAGTGCGTGACACACCCCACCACACTGGGGCTGCCTgcctACGTGCAGGCATGTCGTGCTCTGATGATTATAGCCCTGCTGCTCGGCCTCGCCTCGATCCTCCTCTCTGTCCTGGGACTGAAGTGCACTAAACTGGGCGGCATGAAGGAGACGAGTAAAGGACGTCTCACACTCACTGCTGGATTGCTGTTCATACTGTCtggtttgtgtgtgttgacgGCTGTATCGTGGTACGCATCACGCATCATTCAGGAGTTTAATGACCCCTTTTACGTAGGAACGAggtctgaGCTGGGTACCGGTCTGTATTTGGGTTGGGCCGCAGCGGCGTGTGTGATTATGGGAGGAGCCATGCTGTGTGGatcattcaagagagcaagatCACCCAAACCCTCAGGtggttACAGGTATAAGTCGTCAGCCAATCAGCAGATCTATAAAACAGGTGCTCAGTCAGAGAGCAGCAGCTCCAGAGCGTACGTTTGAACCCAGCACCTGTaccacactctacacacactggaAATGAAAATTGTCTATAAAACCGAAAcataccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgagtgtgtgagtgcttgTGAGTGTGTTGTTTGCGGTGTTACACATGATGTCTTTGTGCTGTTAATGTGAATAATGTTTGTGAAATTGTGGGCTCTTGCCTTTGCCTTTATGAATTagagtgtttctgtgtgtgtttttttttttttgagggggCTTCACATTTTTtagtaataacaacaataaattatatttttataacttcTGTTTTGGGTAATTAGAGTAATTGATAATTtgggttaattttttttctatatatggAGTTGGATAATATTTTGGAATTTGACAGAATAAGGAATAAATTGAAATTGTGCATATTTCTTTTATTGTGTGTGATATGAATAAATCAGAATGGATAAACACGCCA
>XM_026943403.2
ACTCGGGAGACTCACAGAGCAGTTTCTGCCTTTCTTCGCAGTGATGGCGGAGGTAATGGTGGAGGTGATGGGCGTGGTCCTGGCCATTATCGGTTGGTGTTTGGAGTCGAGCAGCACAAACTCAGCCGTGTGGCGGATACACACCAAAGCCGACTCAGTGATGAGGAGCAGCTCACAGTATGAAGGCCTGTGGAAGAGCTGCAGCTCCAGCAACGTGGGGGTGCAGTGCGTGACACACCCCACCACACTGGGGCTGCCTgcctACGTGCAGGCATGTCGTGCTCTGATGATTATAGCCCTGCTGCTCGGCCTCGCCTCGATCCTCCTCTCTGTCCTGGGACTGAAGTGCACTAAACTGGGCGGCATGAAGGAGACGAGTAAAGGACGTCTCACACTCACTGCTGGATTGCTGTTCATACTGTCtggtttgtgtgtgttgacgGCTGTATCGTGGTACGCATCACGCATCATTCAGGAGTTTAATGACCCCTTTTACGTAGGAACGAggtctgaGCTGGGTACCGGTCTGTATTTGGGTTGGGCCGCAGCGGCGTGTGTGATTATGGGAGGAGCCATGCTGTGTGGatcattcaagagagcaagatCACCCAAACCCTCAGGtggttACAGGTATAAGTCGTCAGCCAATCAGCAGATCTATAAAACAGGTGCTCAGTCAGAGAGCAGCAGCTCCAGAGCGTACGTTTGAACCCAGCACCTGTaccacactctacacacactggaAATGAAAATTGTCTATAAAACCGAAAcataccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgagtgtgtgagtgcttgTGAGTGTGTTGTTTGCGGTGTTACACATGATGTCTTTGTGCTGTTAATGTGAATAATGTTTGTGAAATTGTGGGCTCTTGCCTTTGCCTTTATGAATTagagtgtttctgtgtgtgtttttttttttttgagggggCTTCACATTTTTtagtaataacaacaataaattatatttttataacttcTGTTTTGGGTAATTAGAGTAATTGATAATTtgggttaattttttttctatatatggAGTTGGATAATATTTTGGAATTTGACAGAATAAGGAATAAATTGAAATTGTGCATATTTCTTTTATTGTGTGTGATATGAATAAATCAGAATGGATAAACACGCCA

Function

symbol description
cldn1 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in eye; gill; integument; and ovary. Human ortholog(s) of this gene implicated in Crohn's disease and atopic dermatitis. Orthologous to human CLDN1 (claudin 1).

NR:

description
claudin-19-like isoform X3

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943401.2 True 1901 mRNA 0.45 5 1581397 1586966
XM_026943402.2 False 1250 mRNA 0.46 6 1581397 1588455
XM_026943403.2 False 1194 mRNA 0.46 6 1581397 1588380

Neighbor

gene id symbol gene type direction distance location
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 368 1560569 ~ 1581029 (-)
sagb LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819 coding downstream 23093 1546943 ~ 1558304 (-)
LOC113544537 dgkd coding downstream 40675 1521327 ~ 1540722 (-)
ilkap ilkap,LOC107725757,LOC107756217 coding downstream 61582 1514973 ~ 1519815 (-)
zgc:162872 LOC108277719 coding downstream 67342 1505489 ~ 1514055 (-)
LOC113544557 parl coding upstream 4138 1592593 ~ 1597472 (-)
fzd4 fzd4 coding upstream 94310 1682765 ~ 1690584 (-)
pdgfd pdgfd coding upstream 210225 1798680 ~ 1813081 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 335213 1923668 ~ 1946156 (-)
cwf19l2 cwf19l2 coding upstream 361526 1949981 ~ 1965960 (-)
G218695 NA non-coding downstream 4186 1576881 ~ 1577211 (-)
LOC113544681 NA non-coding downstream 13206 1546445 ~ 1568191 (-)
trnag-ucc_16 NA non-coding downstream 85564 1495762 ~ 1495833 (-)
G218377 NA non-coding downstream 87992 1492400 ~ 1493405 (-)
G218347 NA non-coding downstream 224061 1328138 ~ 1357336 (-)
LOC117599072 NA non-coding upstream 14956 1603411 ~ 1616938 (-)
G218720 NA non-coding upstream 36029 1624484 ~ 1682087 (-)
G218734 NA non-coding upstream 87309 1675764 ~ 1676214 (-)
G218768 NA non-coding upstream 181760 1770215 ~ 1770452 (-)
G218773 NA non-coding upstream 189291 1777746 ~ 1786974 (-)
trnag-ucc_18 NA other downstream 83986 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 84291 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 426697 1154410 ~ 1154700 (-)
G218265 NA other downstream 447379 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 478513 955480 ~ 1102884 (-)
scaf4b LOC108411133 other upstream 692946 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1024402 2612857 ~ 2629901 (-)
G219642 NA other upstream 1299452 2887907 ~ 2963350 (-)
G219651 NA other upstream 1318871 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 2138922 3727377 ~ 3807114 (-)

Expression


Co-expression Network