sagb (LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819)


Basic Information

Item Value
gene id sagb
gene name LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1546943 ~ 1558304 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943505.2
cacacctgtctaccTGTCTGACCAAGCACCCAGTGTCTCGTTTTCACACACGTCGTTTTCACAGGTGCCACCATGAGTCCAAAACACGTCATTTATAAGAAGCAGTCACGTGACAAATCTGTGGGTATTTACATGGGGAGGCGGGACTTTGTGGATCACTGTGACTCCGCCGATCCTGTTGacgGTGTAGTGCTGCTCGATCCGCAGcaaataaaaggaaagaaagtgTACGTCATGTTGTCATGTACGTTCCGTTATGGCCGTGATGACACGGACATACTGGGCTGGGCGTTTCGGAGAGATATCTACGTGTGCACGAGGCAGGTGTATCCCCCGCTGCAGGACCGCGAGCGCAGCATCCACACCAAACTGCAAGAGAGGCTGCTGCGCAAACTCGGAGACGACGCCCACCCCTTCTTCTTCGAGtttcCCGATAACCTGCCGTGCTCTGTGGCTCTGCAGCCGGCACCCACTGACGAGGGCAAgcattgTGCGGTGGAGTTTGAGGTGAAGGCTTTCTGTGCTGAGAATCAGGATGAGAAAGCTCATAAGAGgagCTCAGTGCGTTTAGCTATAAGGAAGGTGCAGTACGCTCCTGATAAAGGCGGCGCTCCTCCGTCTAACGAGACAACCTGTGAGTTTATGGTGTCGGACAAACCGCTGCACGTGCGCGTCGCTCTGGAGAAAGAGacATATTATCATGGCGAACCCATCAACGTCAGCGTGGATATTGATAACAGCTCCAGCAAGGACGTGAAGAACCTCACAGTTTCAGTTGAGCAGATGACTAATGTGGTGCTCTACTCCAatgataaatacataaaatctgTAGCCTGTGAGGAAGCCacAGACATAGTGCCGTCTGGAACCAGCCTGAAGAAAGTGTACACTCTTCACCCCTTACTGAAGAACAACCATGAGAGGCGGGGCTTAGCGCTGGATGGGAAGCTGAAGCACGAGGACACCAACCTGGCTTCCTCTAGCATagtgaAGGCGGAGGTTCTGAAGGAGATTCTGGGCATGCTGGTGTCCTACAGAGTGGTGGTCAGGGGCACTGCAgctggCATGATCGGCTCGAGtgaggttGCTGTGGAGGTGCCGTTTCTGCTCATGCATCCTAAACCTGAGGAAGTTAAAGACGGtgAGGACATGGACATGGTGTTTGAAGAGTTTAAGCGCTCGTATCTCAAAGGCGTGGTCGGCGACGATGATGAATCTGCTGACGACTCGTGA
>XM_034310765.1
cacacctgtctaccTGTCTGACCAAGCACCCAGTGTCTCGTTTTCACACACGTCGTTTTCACAGGTGCCACCATGAGTCCAAAACACGTCATTTATAAGAAGCAGTCACGTGACAAATCTGTGGGTATTTACATGGGGAGGCGGGACTTTGTGGATCACTGTGACTCCGCCGATCCTGTTGacgGTGTAGTGCTGCTCGATCCGCAGcaaataaaaggaaagaaagtgTACGTCATGTTGTCATGTACGTTCCGTTATGGCCGTGATGACACGGACATACTGGGCTGGGCGTTTCGGAGAGATATCTACGTGTGCACGAGGCAGGTGTATCCCCCGCTGCAGGACCGCGAGCGCAGCATCCACACCAAACTGCAAGAGAGGCTGCTGCGCAAACTCGGAGACGACGCCCACCCCTTCTTCTTCGAGtttcCCGATAACCTGCCGTGCTCTGTGGCTCTGCAGCCGGCACCCACTGACGAGGGCAAgcattgTGCGGTGGAGTTTGAGGTGAAGGCTTTCTGTGCTGAGAATCAGGATGAGAAAGCTCATAAGAGgagCTCAGTGCGTTTAGCTATAAGGAAGGTGCAGTACGCTCCTGATAAAGGCGGCGCTCCTCCGTCTAACGAGACAACCTGTGAGTTTATGGTGTCGGACAAACCGCTGCACGTGCGCGTCGCTCTGGAGAAAGAGacATATTATCATGGCGAACCCATCAACGTCAGCGTGGATATTGATAACAGCTCCAGCAAGGACGTGAAGAACCTCACAGTTTCAGTTGAGCAGATGACTAATGTGGTGCTCTACTCCAatgataaatacataaaatctgTAGCCTGTGAGGAAGCCacAGACATAGTGCCGTCTGGAACCAGCCTGAAGAAAGTGTACACTCTTCACCCCTTACTGAAGAACAACCATGAGAGGCGGGGCTTAGCGCTGGATGGGAAGCTGAAGCACGAGGACACCAACCTGGCTTCCTCTAGCATagtgaAGGCGGAGGTTCTGAAGGAGATTCTGGGCATGCTGGTGTCCTACAGAGTGGTGGTCAGGGGCACTGCAgctggCATGATCGGCTCGAGtgaggttGCTGTGGAGGTGCCGTTTCTGCTCATGCATCCTAAACCTGAGGAAGtgAGGACATGGACATGGTGTTTGAAGAGTTTAAGCGCTCGTATCTCAAAGGCGTGGTCGGCGACGATGATGAATCTGCTGACGACTCGTGAGACTCCGATCATCTCTTTTTCCGGATTCAGTATTTActatacagtgtttattacagcGTTATAGAGTTTATTATAGCGCGAACGTGTATTAGGTGGAGGAAGGGGTAGTTTTACTAGTGATCTGTGTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943505.2 False 1233 mRNA 0.53 16 1547074 1558304
XM_034310765.1 True 1354 mRNA 0.51 15 1546943 1558304

Neighbor

gene id symbol gene type direction distance location
LOC113544537 dgkd coding downstream 6221 1521327 ~ 1540722 (-)
ilkap ilkap,LOC107725757,LOC107756217 coding downstream 27128 1514973 ~ 1519815 (-)
zgc:162872 LOC108277719 coding downstream 32888 1505489 ~ 1514055 (-)
gmnc gmnc coding downstream 72669 1469820 ~ 1474274 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding downstream 99726 1393277 ~ 1447217 (-)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding upstream 2265 1560569 ~ 1581029 (-)
cldn15lb cldn1 coding upstream 23093 1581397 ~ 1588455 (-)
LOC113544557 parl coding upstream 34289 1592593 ~ 1597472 (-)
fzd4 fzd4 coding upstream 124461 1682765 ~ 1690584 (-)
pdgfd pdgfd coding upstream 240376 1798680 ~ 1813081 (-)
trnag-ucc_16 NA non-coding downstream 51110 1495762 ~ 1495833 (-)
G218377 NA non-coding downstream 53538 1492400 ~ 1493405 (-)
G218347 NA non-coding downstream 189607 1328138 ~ 1357336 (-)
G218324 NA non-coding downstream 319128 1218231 ~ 1227815 (-)
G218695 NA non-coding upstream 18577 1576881 ~ 1577211 (-)
LOC117599072 NA non-coding upstream 45107 1603411 ~ 1616938 (-)
G218720 NA non-coding upstream 66180 1624484 ~ 1682087 (-)
G218734 NA non-coding upstream 117460 1675764 ~ 1676214 (-)
G218768 NA non-coding upstream 211911 1770215 ~ 1770452 (-)
trnag-ucc_18 NA other downstream 49532 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 49837 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 392243 1154410 ~ 1154700 (-)
G218265 NA other downstream 412925 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 444059 955480 ~ 1102884 (-)
scaf4b LOC108411133 other upstream 723097 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1054553 2612857 ~ 2629901 (-)
G219642 NA other upstream 1329603 2887907 ~ 2963350 (-)
G219651 NA other upstream 1349022 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 2169073 3727377 ~ 3807114 (-)

Expression


Co-expression Network