tomt (LOC108277653,LOC107679441,LOC108411353,LOC107557662)


Basic Information

Item Value
gene id tomt
gene name LOC108277653,LOC107679441,LOC108411353,LOC107557662
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5110668 ~ 5113955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943570.2
GATCAGTTCACCTCAGTTCGACTTCTCTTCTGAAAGGTAGAAGAAACTCACACAGGAACCGTAAGTGACATCATCAAGcagtgcattgtgggaaatggtGTCTGCAGCCATTGCTCTGGCCTTCGTGCCGTTGTTGCTCACGCTGATCATCCGGTACCGGTTCTACTTCGTGCTGTTCTATCGGGCCGTGCTGCTCCGCTGGGTTCAGGACTTTATGACAGGCATCAGCAGGGAGGAGAGAGTGTACCAGTATGTCCTCACACACGCCACACCAGGAGATCCTGACAGCATCCTCGATACCTTTGACCTCTGGTGCAGCAATGTCGAGTTCATCAGCCATATAGGACCTAAAAAAGGTTTGATTCTGGACCGTCTGCTGAAGGAGCTTTGTCCTCTGACGGTGTTAGAACTGGGGACTCACTGCGGCTACACCACAGTGAGAATCGCTCGCTCACTGCCTCTCGGTGCTCGGCTCTACTCGGTGGAGATGGATGAGAGGAATGCACGTGTGGCCGAGAAGATCATCCGACTGGCTGGGTTTGATGATGACACGGTGGAGCTGATTGTGCGACCTTCTGATGAGGTGATTCCCCGTTTGCGTGAGGATTTCGGTATTGAGCGTCTGGACTTTGTGTTCATGGACCACTGGAAGCGGTGTTATCTGCCGGACCTGCAGGCTCTGGAGGACAGTGGGCTGCTGGGCGACGGCTCCATGGTGTTGGCCGATAACGTGGTGTTTCCTGGCGCTCCCAGCTTCCTGCGCCATGTGCGTCGCTCTGGCCTCTATGAACACCGCGTGCACCGTGCTGCGCTGGAGTACATCCGGGGAATCCGTGACGGCATGGCCGAACTCGTGTACCGCGGCATTAAGTGAAGGATATGTGAGAGCCAGttagcttatttattttaaaataaagatactGAGGATGAGCTCAGTAAACAAAATGTTCATGGAAAAACCCAGAAACAAGTAAAATtaaactgcacaaaatgtaacatgcaatttaaaaaagttttgggtacagaatgttaaaaatgtcagtaaaattcacttttgaataaaataaagctattaTACAGTAAGATCCAATGGCAGACTTTAACAGATTTGTGCCTTTGTcacaaaaataatgatttaaaatgagcTGAATTTTTGTGAAACAAAATTATGCAATGAAAGTAAAATCTCgattgaatttattttcaccAACAAACTTTCATCTCATGTCAATGTTAGCAACCTTCTAagccagctagctaatattagctactATTAACCAAAAAACGAGTTGTACTTTACAAACAGTATTTCATGGAAATAAAATAGATAGTTTATCAGATCATCAAAGTTTTACATAAAATTCATGTTAACGAAACTCTAACATTCAAACTTAAATATTCACAA

Function

NR:

description
LOW QUALITY PROTEIN: transmembrane O-methyltransferase-like

GO: NA

KEGG:

id description
K00545 COMT; catechol O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943570.2 True 1405 mRNA 0.45 4 5110668 5113955

Neighbor

gene id symbol gene type direction distance location
folr LOC108277654 coding downstream 11678 5094843 ~ 5098990 (-)
inppl1a inppl1,LOC108261207 coding downstream 19069 5054916 ~ 5091599 (-)
stard10 stard10,LOC108278271,LOC106581404 coding downstream 122419 4978933 ~ 4988249 (-)
LOC113544562 pde2a coding downstream 252261 4685721 ~ 4858407 (-)
LOC113544596 LOC108278291,LOC108413393 coding downstream 584854 4501781 ~ 4525814 (-)
kbtbd3 kbtbd3 coding upstream 23348 5137303 ~ 5142967 (-)
LOC113532789 flj13639,LOC108278219,LOC108433977,LOC103025652,LOC107725108,LOC107670134,LOC107669913 coding upstream 279863 5393818 ~ 5403318 (-)
LOC113532491 dnhd1 coding upstream 337320 5451275 ~ 5488244 (-)
si:ch211-149e23.4 LOC108278242 coding upstream 422243 5536198 ~ 5549047 (-)
diabloa LOC108278350 coding upstream 492749 5606704 ~ 5609015 (-)
LOC117599070 NA non-coding downstream 95725 5013148 ~ 5014943 (-)
G220705 NA non-coding downstream 114974 4948544 ~ 4995694 (-)
LOC117599069 NA non-coding downstream 205371 4902623 ~ 4905297 (-)
G220694 NA non-coding downstream 221455 4888864 ~ 4889213 (-)
G220693 NA non-coding downstream 222222 4887906 ~ 4888446 (-)
G220816 NA non-coding upstream 228114 5342069 ~ 5342566 (-)
LOC117599045 NA non-coding upstream 235725 5349680 ~ 5353368 (-)
G220822 NA non-coding upstream 290126 5404081 ~ 5404283 (-)
G220826 NA non-coding upstream 302830 5416785 ~ 5416995 (-)
G220834 NA non-coding upstream 329537 5443492 ~ 5443702 (-)
LOC113544632 arap1 other downstream 139149 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 1293833 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 1303554 3727377 ~ 3807114 (-)
G219642 NA other downstream 2147318 2887907 ~ 2963350 (-)
nectin3a LOC108278241 other upstream 436464 5550419 ~ 5599375 (-)
G220990 NA other upstream 596143 5710098 ~ 5710891 (-)
LOC113532612 LOC108277970 other upstream 683973 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 907190 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 1505217 6619172 ~ 6653418 (-)

Expression


Co-expression Network