ilkap (ilkap,LOC107725757,LOC107756217)


Basic Information

Item Value
gene id ilkap
gene name ilkap,LOC107725757,LOC107756217
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1514973 ~ 1519815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943595.2
AGTTTGATGAGTTAACTCGCTAACACTGTTGTGTTCAGATGCTACCATTGAGGCTGAATCTAAAATGGCTGCCTCCTCCCTACATCAGCGCACTACACTCACTATACATTAACAACCTCTCTACTCCCTTTGTAGTGATTATTTATATCTCACAAGCACGGATTTAGGATTGAACCCCCAGCCAACGTTGGGCGTGAGGACGAGATCCTAGGCTTGTGAAAAGATATTTGCAGAAATTTCAATTTATTTGCAGACAACTAGAAAAATTCAGTAAGCAAATAAAGTAGGGAATCCTCATAAGAAGGTTAGACTAGCTAAACTAGCTAACCAAGCTAACTAGTCTCAGCTATAATCACAGTTTGCTCATAAATATCGAGATGGATTTGTTTGCAGATCTTCCTGCTCCTACGAACAATACAAACTCGGgcagCAAAGATGAAGACGGCGTTCAGGACCGTGGAGAGAAgagacacagggacacacactcGGACGATGAGCAGGATAAGGCGGAAAAGAAAGTTTGTAAAGgactgGCTAAGCTGAAGGGTTTCGTGGCAGCACGGCGTGGTGAGCGAGAGGACATGCAGGATGCTCACGTCATTTTACCTAAcctccacacacatacaaacacactgcCTACACATGTgtCCAGGTTGGCGTATTTTGCTGTGTTTGATGGTCATGGTGGTGCTCGAGCGTCTCAGTTTGCTGCTGAACATCTGCATCACACACTACTTAGCAAATTCCCtaaagGAGAGATTGAAAATCTGGATAAACTGGTGAGGAAATGTCTGCTCGATTCGTTTCGCCACACGGATGAGGAATTCCTGAAAAAAGCCTCTAGCCAgaagCCGGTATGGAAGGACGGCTCCACAGCTACATGTATGTTGGTCGTGGATGACGATCTGTACGTGGCCAACCTGGGAGACAGCAGAgcAGTGCTGTGTCGTTTGGAGCACACTGAGGATGGagaggagaagtgtgtgtgtgtggctctcaGTAAAGAACACAATCCTACCATCTATGAAGAGCGCATGAGGATACAGAGAGCAGGAGGAACTGTCAGagATGGACGTGTGTTAGGTGTGTTAGAAGTTTCCCGCTCCATCGGTGACGGTCAGTATAAACGCTGTGGAGTGATTTCAACACCAGACCTGAGACGCTGCACACTCAGCCCTAAAGACAAgtttgTGATTCTGGCCTGTGATGGACTTTTCAAAGTGTTCTCAGCGGATGAGGCTGTTCAGTTCGTCAACAAAATTCTacagGGCGAGTCGGTGGAGACAAAGGAGGGGCAGACTGTGGAGGAGGCGCGTTACGAAGCTGCTTGTCAGAAACTGGCTACCGAGGCTGTGAGGCGAGGCTGTGCTGACAACGTCACGGTCATCCTGATCTCCATTGACTTCtgacacatttctctctctcgcacactctctcacacacactcacacactcacacaccagcGGAGTGTTTAGGCTTCCtgttgcattttattcattttgaactGGACATTTCTAAAAGACTTTCAAACTCTGAGTGCTGGgatttttaatcaaataaaaatcctaACATTGTCAGTCA
>XM_026943596.2
GCTAGTTTGATGAGTTAACTCGCTAACACTGTTGTGTTCAGATGCTACCATTGAGGCTGAATCTAAAATGGCTGCCTCCTCCCTACATCAGCGCACTACACTCACTATACATTAACAACCTCTCTACTCCCTTTGTAGTGATTATTTATATCTCACAAGCACGGATTTAGGATTGAACCCCCAGCCAACGTTGGGCGTGAGGACGAGATCCTAGGCTTGTGAAAAGATATTTGCAGAAATTTCAATTTATTTGCAGACAACTAGAAAAATTCAGTAAGCAAATAAAGTAGGGAATCCTCATAAGAAGGTTAGACTAGCTAAACTAGCTAACCAAGCTAACTAGTCTCAGCTATAATCACAGTTTGCTCATAAATATCGAGATGGATTTGTTTGCAGATCTTCCTGCTCCTACGAACAATACAAACTCGGgcagCAAAGATGAAGACGGCGTTCAGGACCGTGGAGAGAAgagacacagggacacacactcGGACGATGAGCAGGATAAGGCGGAAAAgactgGCTAAGCTGAAGGGTTTCGTGGCAGCACGGCGTGGTGAGCGAGAGGACATGCAGGATGCTCACGTCATTTTACCTAAcctccacacacatacaaacacactgcCTACACATGTgtCCAGGTTGGCGTATTTTGCTGTGTTTGATGGTCATGGTGGTGCTCGAGCGTCTCAGTTTGCTGCTGAACATCTGCATCACACACTACTTAGCAAATTCCCtaaagGAGAGATTGAAAATCTGGATAAACTGGTGAGGAAATGTCTGCTCGATTCGTTTCGCCACACGGATGAGGAATTCCTGAAAAAAGCCTCTAGCCAgaagCCGGTATGGAAGGACGGCTCCACAGCTACATGTATGTTGGTCGTGGATGACGATCTGTACGTGGCCAACCTGGGAGACAGCAGAgcAGTGCTGTGTCGTTTGGAGCACACTGAGGATGGagaggagaagtgtgtgtgtgtggctctcaGTAAAGAACACAATCCTACCATCTATGAAGAGCGCATGAGGATACAGAGAGCAGGAGGAACTGTCAGagATGGACGTGTGTTAGGTGTGTTAGAAGTTTCCCGCTCCATCGGTGACGGTCAGTATAAACGCTGTGGAGTGATTTCAACACCAGACCTGAGACGCTGCACACTCAGCCCTAAAGACAAgtttgTGATTCTGGCCTGTGATGGACTTTTCAAAGTGTTCTCAGCGGATGAGGCTGTTCAGTTCGTCAACAAAATTCTacagGGCGAGTCGGTGGAGACAAAGGAGGGGCAGACTGTGGAGGAGGCGCGTTACGAAGCTGCTTGTCAGAAACTGGCTACCGAGGCTGTGAGGCGAGGCTGTGCTGACAACGTCACGGTCATCCTGATCTCCATTGACTTCtgacacatttctctctctcgcacactctctcacacacactcacacactcacacaccagcGGAGTGTTTAGGCTTCCtgttgcattttattcattttgaactGGACATTTCTAAAAGACTTTCAAACTCTGAGTGCTGGgatttttaatcaaataaaaatcctaACATTGTCAGTCA
>XM_026943597.2
CAGATCTTCCTGCTCCTACGAACAATACAAACTCGGgcagCAAAGATGAAGACGGCGTTCAGGACCGTGGAGAGAAgagacacagggacacacactcGGACGATGAGCAGGATAAGGCGGAAAAGAAAgactgGCTAAGCTGAAGGGTTTCGTGGCAGCACGGCGTGGTGAGCGAGAGGACATGCAGGATGCTCACGTCATTTTACCTAAcctccacacacatacaaacacactgcCTACACATGTgtCCAGGTTGGCGTATTTTGCTGTGTTTGATGGTCATGGTGGTGCTCGAGCGTCTCAGTTTGCTGCTGAACATCTGCATCACACACTACTTAGCAAATTCCCtaaagGAGAGATTGAAAATCTGGATAAACTGGTGAGGAAATGTCTGCTCGATTCGTTTCGCCACACGGATGAGGAATTCCTGAAAAAAGCCTCTAGCCAgaagCCGGTATGGAAGGACGGCTCCACAGCTACATGTATGTTGGTCGTGGATGACGATCTGTACGTGGCCAACCTGGGAGACAGCAGAgcAGTGCTGTGTCGTTTGGAGCACACTGAGGATGGagaggagaagtgtgtgtgtgtggctctcaGTAAAGAACACAATCCTACCATCTATGAAGAGCGCATGAGGATACAGAGAGCAGGAGGAACTGTCAGagATGGACGTGTGTTAGGTGTGTTAGAAGTTTCCCGCTCCATCGGTGACGGTCAGTATAAACGCTGTGGAGTGATTTCAACACCAGACCTGAGACGCTGCACACTCAGCCCTAAAGACAAgtttgTGATTCTGGCCTGTGATGGACTTTTCAAAGTGTTCTCAGCGGATGAGGCTGTTCAGTTCGTCAACAAAATTCTacagGGCGAGTCGGTGGAGACAAAGGAGGGGCAGACTGTGGAGGAGGCGCGTTACGAAGCTGCTTGTCAGAAACTGGCTACCGAGGCTGTGAGGCGAGGCTGTGCTGACAACGTCACGGTCATCCTGATCTCCATTGACTTCtgacacatttctctctctcgcacactctctcacacacactcacacactcacacaccagcGGAGTGTTTAGGCTTCCtgttgcattttattcattttgaactGGACATTTCTAAAAGACTTTCAAACTCTGAGTGCTGGgatttttaatcaaataaaaatcctaACATTGTCAGTCA

Function

symbol description
ilkap Predicted to enable metal ion binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to be active in cytosol and nucleus. Orthologous to human ILKAP (ILK associated serine/threonine phosphatase).

NR:

description
integrin-linked kinase-associated serine/threonine phosphatase 2C isoform X2

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17500 ILKAP; integrin-linked kinase-associated serine/threonine phosphatase 2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943595.2 True 1582 mRNA 0.47 10 1514973 1519812
XM_026943596.2 False 1571 mRNA 0.47 10 1514973 1519815
XM_026943597.2 False 1182 mRNA 0.49 10 1514973 1519422

Neighbor

gene id symbol gene type direction distance location
zgc:162872 LOC108277719 coding downstream 918 1505489 ~ 1514055 (-)
gmnc gmnc coding downstream 40699 1469820 ~ 1474274 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding downstream 67756 1393277 ~ 1447217 (-)
col4a4 NA coding downstream 224538 1234907 ~ 1290435 (-)
irs1 irs1,LOC107577679 coding downstream 297777 1198113 ~ 1217196 (-)
LOC113544537 dgkd coding upstream 1512 1521327 ~ 1540722 (-)
sagb LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819 coding upstream 27128 1546943 ~ 1558304 (-)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding upstream 40754 1560569 ~ 1581029 (-)
cldn15lb cldn1 coding upstream 61582 1581397 ~ 1588455 (-)
LOC113544557 parl coding upstream 72778 1592593 ~ 1597472 (-)
trnag-ucc_16 NA non-coding downstream 19140 1495762 ~ 1495833 (-)
G218377 NA non-coding downstream 21568 1492400 ~ 1493405 (-)
G218347 NA non-coding downstream 157637 1328138 ~ 1357336 (-)
G218324 NA non-coding downstream 287158 1218231 ~ 1227815 (-)
LOC113544681 NA non-coding upstream 26630 1546445 ~ 1568191 (-)
G218695 NA non-coding upstream 57066 1576881 ~ 1577211 (-)
LOC117599072 NA non-coding upstream 83596 1603411 ~ 1616938 (-)
G218720 NA non-coding upstream 104669 1624484 ~ 1682087 (-)
G218734 NA non-coding upstream 155949 1675764 ~ 1676214 (-)
trnag-ucc_18 NA other downstream 17562 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 17867 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 360273 1154410 ~ 1154700 (-)
G218265 NA other downstream 380955 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 412089 955480 ~ 1102884 (-)
scaf4b LOC108411133 other upstream 761586 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1093042 2612857 ~ 2629901 (-)
G219642 NA other upstream 1368092 2887907 ~ 2963350 (-)
G219651 NA other upstream 1387511 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 2207562 3727377 ~ 3807114 (-)

Expression


Co-expression Network