zgc:162872 (LOC108277719)


Basic Information

Item Value
gene id zgc:162872
gene name LOC108277719
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1505489 ~ 1514055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310351.1
ttttattttgacaggcGGTGAAACTGTCACCTGCTGCTTCACACTGCGGCTGTGcagaaaaactgtgtgtgtgtaacagaagAAGAGCTTCTGGGCTTCCAGGCTACActagaatatttttttatcagtgTTATTTATTCGTTTTAACCGGTTTTATCAAGGCGGTGATGTGCGCAGCCGCAGTGACGGCGTTATAAACAGTTATTTCTCAGCGTTTCCGTTATGTGCGCTGATAACATCTCCGTTATCTCCGAAACGACGCTCAAACTCCGGATTTGACGCGTTTTTGCGCAACTTATCTTAGTAGCGATCATTTGCGAGCAACATTTCAATAATGAcgtttaaaaaaagtaaagtattaGTGATGATGTGTTAGTGTGAGCTTGGGAAGGAAACGCAGGGACAGAAACAGGACGCGCTGAGAGCTGTAAAACCCGGCATGGACTACTTCCTGGATTTTCAGGCGTGCATCCGGGACTCTCCGGTGTTCAGGCTGTCTTTGGAGCGGTGTGAGAATGATCTAGAGGAGCTGGAGAGTCGCATGGAGAAGGTGATGAGATTGTGTAATAAGATGGTggatgatggtcaggtgttttGTACATCTAATCAGCTCTTCCTGTCAGCGCTGGCTGAGCTCACCTCACACCATAAAAACAGCACTGTTATAGAGaattgTCTGCAGCAGTTTAATCAGGCTTTGCAGGAGATGATCCACTTCCACACAaTGCTGTTTGACCAGACTCGGAGAGCGATCACACAACAGCTCACAAATCTACTAACGCAgttccTCCCCCCGCTGCGCGCTGCTCGATGTGAGTGTGTACGGATCAAAGACGAGCTGAACACGGCGCTAATCAAGAGCGCTCAGGTTCCACAGCACAAAGTGGCTGAAGCAGAGcgacacacacacttgctgctCGCAACACGCAAGtgctacacacactgcagcctgGACTACTGcttacagCTTAATAATTTCCTGACTCAGCAGAAGCTAGACGTGCTGAATTCAgttttctccttttttcacgCGCAGAACACGTTTTTTCATCAGGGCTTTGACCTGCTAAAAGATCTGGAGCCCACCATGAAGATCATGGCATCTGAgctGTCTGGACTCTCAGCTGAATGTGTGAACAGAAAGAAGAACCTGGAACATCAACACTTGCTCGTTCAGCAGAAAgatgcCTGTGGGGAGCCTGTGCTGTTCAATGGAGGAGCGATTGAAGGATATCTGTTTAAACGCTCACGGAGGAAGAACAAAACATGGAAgagGTGCTGGTTTTCAGCGAATCATAATCAGCTGATTTACACCAAATCACACAAGgagcagcCACTTGTGCTGTTTGATGATCTCCGGTTGTGTGCTGTAAAATCTCTGGACTCAGTGGATCGGCGTTTCTGTTTTGAGCTGCTGTCTGTGCAGAAgagctGTGTTTTACAGGCAGACTCGGAGGAATTAAAGATGGCGTGGATGAACGCAGTGCAGAGCCGCATTGACATGGCgtacagagagagagtgcagtctgaacacacacaggtgaaGGATAGTTCtcttcctgctcctgctcttgCTCCTGCCCCTCTACTTGGTCCGCTTAGCACGGTTCTCCGTAGCCATGGTAACCACCGCTGCTGTGACTGTGGGGAGGCGGAGCCTCGCTGGGCCAGCGTGAACCTCGGGATCACAGTCTGCATCGAGTGTTCCGGCATCCACAGgagTCTGGGTGTACATCTGTCTAAGGTTCGCTCCCTCACTCTGGATTCATGGGACCCTGAACAGCtaaagCTGTTGTGTGTTCTGGGTAACGACGTCATCAACGGAATTTATGAACATCACCTGTCTGAGATGGAGAAACCCAACTCTGATAGCTCTCGgcaGCAGAAGGAGGTGTATATCAGAATGAAGTATGTGGAGAGGAAGTTCGTTCAGGGGTGTGACCCTCATCTCACTgAGACCATACAGCAGTGGGCGGGACGGAGACTGTATGATGCGGCGTTGGGTGGCGACATCGTCTCCATGGCACTGGCTCTGGCTCAGGGGGGCGACGTGAACTGGACTAACCCCGAGGGACGGACGCCTCTGATTGGTGCAGCAATTGGAggctcGTTAGTGGCGTGCGAATTCCTTCTGCAGAACGGCGCAAACGCCAATCACAGAGACCAACACGGACACGCAGCCATACACACAGCTACAACACGGGGACACacaggGCAGGTGTGTCTGCTGTTGAAGAGAGGAGCCAATCAGTACGCAGCAGATGAAAAAGGAAAGGATCCCCTCAGTATTGCCATGGAAACGGCTCACGCCGACATCGTTACGCTgttgAGAATGGCCCGTATGAATGAAGAAATGAGAGAGTCTGAAGGATTTTTTGGATCAGTTGGAGATGATGAGACGTTTCAGGACATTGTCCGTGATTTCAGTAACATGGCGTCTCATGATCCAGAGCAGCTGTCGCGCAGACACTTCAGCACTCAGGACGAATCACAGGAAGAATGGAGGGATGGAAAGATACCGGAGAAGAGCTGAGGACAGGAGATGTGGGGCGTTTTGCCCTGAGTGGATCGACTGAGCTATAGTTCTGGTTGAAAGTATAGGGTTagagtttagtgtttagtgttttagGCTTTTGGAGTTTTGGCTTTTAGGAATTAGGAATTAGAGTTCAGGGGAGAATTTATGGTTAGGGAAAGTCAAAtaacttcctgtttctttctgAATAAGTCTGGTGACTGAAGGGGACCAAGGGATTACTGTAAAGATAAATGATAGACATTTctctgcaaaagtcttggcaccctattttatttttatttttttttagtacaaactttgttacagatgtttattttctgacttctacattattgattcagtacaaaaa

Function

NR:

description
arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310351.1 True 2888 mRNA 0.48 22 1505489 1514055

Neighbor

gene id symbol gene type direction distance location
gmnc gmnc coding downstream 31215 1469820 ~ 1474274 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding downstream 58272 1393277 ~ 1447217 (-)
col4a4 NA coding downstream 215054 1234907 ~ 1290435 (-)
irs1 irs1,LOC107577679 coding downstream 288293 1198113 ~ 1217196 (-)
LOC117599094 LOC107697487 coding downstream 382752 1121082 ~ 1122737 (-)
ilkap ilkap,LOC107725757,LOC107756217 coding upstream 918 1514973 ~ 1519815 (-)
LOC113544537 dgkd coding upstream 7272 1521327 ~ 1540722 (-)
sagb LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819 coding upstream 32888 1546943 ~ 1558304 (-)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding upstream 46514 1560569 ~ 1581029 (-)
cldn15lb cldn1 coding upstream 67342 1581397 ~ 1588455 (-)
trnag-ucc_16 NA non-coding downstream 9656 1495762 ~ 1495833 (-)
G218377 NA non-coding downstream 12084 1492400 ~ 1493405 (-)
G218347 NA non-coding downstream 148153 1328138 ~ 1357336 (-)
G218324 NA non-coding downstream 277674 1218231 ~ 1227815 (-)
G218325 NA non-coding downstream 282875 1221153 ~ 1222614 (-)
LOC113544681 NA non-coding upstream 32390 1546445 ~ 1568191 (-)
G218695 NA non-coding upstream 62826 1576881 ~ 1577211 (-)
LOC117599072 NA non-coding upstream 89356 1603411 ~ 1616938 (-)
G218720 NA non-coding upstream 110429 1624484 ~ 1682087 (-)
G218734 NA non-coding upstream 161709 1675764 ~ 1676214 (-)
trnag-ucc_18 NA other downstream 8078 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 8383 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 350789 1154410 ~ 1154700 (-)
G218265 NA other downstream 371471 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 402605 955480 ~ 1102884 (-)
scaf4b LOC108411133 other upstream 767346 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1098802 2612857 ~ 2629901 (-)
G219642 NA other upstream 1373852 2887907 ~ 2963350 (-)
G219651 NA other upstream 1393271 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 2213322 3727377 ~ 3807114 (-)

Expression


Co-expression Network