rflnb (rflnb)


Basic Information

Item Value
gene id rflnb
gene name rflnb
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11281331 ~ 11284623 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310377.1
GGACAGCTTTTTCTCAGCCTCTGCCGTGCCGAGGCAGTTATAAAAGCGTTTCCGTTTCTCCTTCTGAGGGTAAAACAATGAGCGTCTTTGAAGGAGGACACGTTTAAAATCTAGGCAAAATCAGGACTGATGTATTTTGTACAATTTTGGATGTAACCGACTGCAAGGCTGTAAATAATCCCGGGGTGGGGGTAtctatgtgtaatgtgtaaccTGTGATCCTCTGCTGACCAGGTAAAAGGACTGCTGTATAATCCCTTTTCACATAAAGAGATCTTCAAAAGGGGAATAAACAAGGGATAAAAGTAGTCAGGAAACGAGTGGAGAAGGAACCGTGAGCTGAATTAAAGGCAGTCAGATTGTTCAGTACTACTGAAAGCTGCAGATTAAAGGGACTGCTCACGCGCTCCACTACACTCAGGCTGGCAATGGTGGGGAGGCTCAATCTGCGCAATGTGTGTGACGAAGACCTGCTGGAGATGAACCTGAAAGCTGAGAGACTGCTGGACAGTCCGGACTCTGGTCTGCCTCCCAGCCCCAGTGTGAGTCCGAGCCCATGGCTGAGTGGGGACAGGAGCGGGGACAGGAGCGGGGACAGGAGCGCAGCCAGCCCCAGTGTGAGTCCCAGCCCATGGCTGAGTGGGGACAGGAGTGGGGACAGGAGCACCACCAGCTCCGTGTGTGAAGACGAGAGCAGAGCTGTGACTCCCACTGCGGGTCCTCTTAAGCTTGTTAGAAGTGTTTCTCAATTGCACCCATTTTCCTACGGTGAGGGAATTGAACTTGATCCTCTGCCCCCAAAAGAATTAAGATACACATCATCAGTGCGCTATGACTCGGATCGCCACTACATCCAGGATGTGTGTTTACAGCCCACAGGTTTGGGCCTGGAGTTGTGCAGCCAGACCATCATAGCTGTCTCAGAGAGCACATGGAGACGATATAAGACCCAGTTGGAGTTCGAGCCCCGTCAGCGGGTGCAGCGCTACCGGAGCACCACCATTGTGTACCCCAAACATGCCAGGACCGTGTACACCACACAGCTCAGCTATGATGAACGCAAGTTGGCCAAGCGCTTCCTGTCCAGTGTGGAATTAGAGGTGTCTGACTGCAAGGCCAACCAATGTTGAAGGAAGAGGGACTTTTTGGAGAAAAGCTAACAAAATATGCCCATCGTTATTCATTAAAAACCGGGTGTTTAGAACCGGATGGGTGGAATTGCCAGACTGTATGTTAATGGTTTAATTATCATGTTTGTTTTCAGATGGATGGAGTATCATGCATCTGGAGGTTTGGATGGGTTTTAATGTTACTGCAATACAAATGTATATTACATATTCTACGTAACATTTGCAGCCCTGTTGGTTTTAAGATTCTGCTCAGTGATGTTGATCCATCACTTATTGAAAGTTTTATGGTAATGTAGCAGTACTGTGCTCAGTAAAAGCACAGACGAGCTGTAAGTGAAACAGGAAAGTGATGAAAGTGATGAAACAGGAAAGACATGAAAGAGAGTTAAATTCAACCTTTGTAAAATGTTcgggatttttatttttattggagTGTCCATACTGGGTTGTTTCAGGTATCTATATATGAGGATTAACTTAACTGAGGCATGATGTCTAACATCAAAATTCAGATATTACATGCCTCAGTAATCTGTGGTGTGTCAATGGTTTTATTGAGGTGTGGAACAGCGTGAAATTTTGTACAGTCATGTAGGTGAGAACAGGTGAAACACACGATCCAATAGAATAGGTTGACAGAGGTTGTCTATGTGTACTACTGTAAGTTCACATTTGggcttaacttttttttttttttttttaaatttcatgtcatgtcatttcatttcatgtttacctgcacttcatctttttttccatttcacttctttcattcagatgttttgttcttcagtcattttttttttttttttaattcttttcagTTGCACTGCTGCAGGCAGAATGAGGAGGATAAAGGCTTGTTCTGAGGGGAAATGAACTGTTTTGAATGTTTGTGCAAATCTGAATTGCAGAACTCACAGACagtatcattgttttttttcccagtgatTTTACCTGTTCTACAGCACTTCAGCTTTGTCATGCATAGATATAGAAATCACGGCTgcagtatatttatttaaagcttttaaaggTTTCAACTGTATACAAGTACTTCAGCTGTGCTACATTAAAGTTAACCATTGATTTCATCTTAGATTGGTATTGTTATTTCAAGTTCAgcctaaaatattttttttaaataaatcaatttaaactgattttaataTGTATGCTCTAAAGCAAAGCATGAAAATGTTAGGTTAATCCTgatataaattatattgtaaGCTGAGAGATTGGCACTTTTCAAATAAAGACCACAAGCATACAAACCAT
>XM_034310378.1
CGGACAGCTTTTTCTCAGCCTCTGCCGTGCCGAGGCAGTTATAAAAGCGTTTCCGTTTCTCCTTCTGAGGGTAAAACAATGAGCGTCTTTGAAGGAGGACACGTTTAAAATCTAGGCAAAATCAGGACTGATGTATTTTGTACAATTTTGGATGTAACCGACTGCAAGGCTGTAAATAATCCCGGGGTGGGGGTAtctatgtgtaatgtgtaaccTGTGATCCTCTGCTGACCAGGTAAAAGGACTGCTGTATAATCCCTTTTCACATAAAGAGATCTTCAAAAGGGGAATAAACAAGGGATAAAAGTAGTCAGGAAACGAGTGGAGAAGGAACCGTGAGCTGAATTAAAGGCAGTCAGATTGTTCAGTACTACTGAAAGCTGCAGATTAAAGGGACTGCTCACGCGCTCCACTACACTCAGGCTGGCAATGGTGGGGAGGCTCAATCTGCGCAATGTGTGTGACGAAGACCTGCTGGAGATGAACCTGAAAGCTGAGAGACTGCTGGACAGTCCGGACTCTGGTCTGCCTCCCAGCCCCAGTGTGAGTCCGAGCCCATGGCTGAGTGGGGACAGGAGTGGGGACAGGAGTGGGGACAGGAGCACCACCAGCTCCGTGTGTGAAGACGAGAGCAGAGCTGTGACTCCCACTGCGGGTCCTCTTAAGCTTGTTAGAAGTGTTTCTCAATTGCACCCATTTTCCTACGGTGAGGGAATTGAACTTGATCCTCTGCCCCCAAAAGAATTAAGATACACATCATCAGTGCGCTATGACTCGGATCGCCACTACATCCAGGATGTGTGTTTACAGCCCACAGGTTTGGGCCTGGAGTTGTGCAGCCAGACCATCATAGCTGTCTCAGAGAGCACATGGAGACGATATAAGACCCAGTTGGAGTTCGAGCCCCGTCAGCGGGTGCAGCGCTACCGGAGCACCACCATTGTGTACCCCAAACATGCCAGGACCGTGTACACCACACAGCTCAGCTATGATGAACGCAAGTTGGCCAAGCGCTTCCTGTCCAGTGTGGAATTAGAGGTGTCTGACTGCAAGGCCAACCAATGTTGAAGGAAGAGGGACTTTTTGGAGAAAAGCTAACAAAATATGCCCATCGTTATTCATTAAAAACCGGGTGTTTAGAACCGGATGGGTGGAATTGCCAGACTGTATGTTAATGGTTTAATTATCATGTTTGTTTTCAGATGGATGGAGTATCATGCATCTGGAGGTTTGGATGGGTTTTAATGTTACTGCAATACAAATGTATATTACATATTCTACGTAACATTTGCAGCCCTGTTGGTTTTAAGATTCTGCTCAGTGATGTTGATCCATCACTTATTGAAAGTTTTATGGTAATGTAGCAGTACTGTGCTCAGTAAAAGCACAGACGAGCTGTAAGTGAAACAGGAAAGTGATGAAAGTGATGAAACAGGAAAGACATGAAAGAGAGTTAAATTCAACCTTTGTAAAATGTTcgggatttttatttttattggagTGTCCATACTGGGTTGTTTCAGGTATCTATATATGAGGATTAACTTAACTGAGGCATGATGTCTAACATCAAAATTCAGATATTACATGCCTCAGTAATCTGTGGTGTGTCAATGGTTTTATTGAGGTGTGGAACAGCGTGAAATTTTGTACAGTCATGTAGGTGAGAACAGGTGAAACACACGATCCAATAGAATAGGTTGACAGAGGTTGTCTATGTGTACTACTGTAAGTTCACATTTGggcttaacttttttttttttttttttaaatttcatgtcatgtcatttcatttcatgtttacctgcacttcatctttttttccatttcacttctttcattcagatgttttgttcttcagtcattttttttttttttttaattcttttcagTTGCACTGCTGCAGGCAGAATGAGGAGGATAAAGGCTTGTTCTGAGGGGAAATGAACTGTTTTGAATGTTTGTGCAAATCTGAATTGCAGAACTCACAGACagtatcattgttttttttcccagtgatTTTACCTGTTCTACAGCACTTCAGCTTTGTCATGCATAGATATAGAAATCACGGCTgcagtatatttatttaaagcttttaaaggTTTCAACTGTATACAAGTACTTCAGCTGTGCTACATTAAAGTTAACCATTGATTTCATCTTAGATTGGTATTGTTATTTCAAGTTCAgcctaaaatattttttttaaataaatcaatttaaactgattttaataTGTATGCTCTAAAGCAAAGCATGAAAATGTTAGGTTAATCCTgatataaattatattgtaaGCTGAGAGATTGGCACTTTTCAAATAAAGACCACAAGCATACAAACCAT

Function

symbol description
rflnb Predicted to enable filamin binding activity. Predicted to be involved in several processes, including actin filament bundle organization; negative regulation of bone mineralization involved in bone maturation; and negative regulation of chondrocyte development. Predicted to act upstream of or within regulation of chondrocyte development. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in actin filament bundle. Orthologous to human RFLNB (refilin B).

NR:

description
PREDICTED: protein FAM101B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310377.1 True 2411 mRNA 0.42 4 11281331 11284622
XM_034310378.1 False 2349 mRNA 0.41 4 11281331 11284623

Neighbor

gene id symbol gene type direction distance location
exo5 exo5 coding downstream 1357 11273763 ~ 11279974 (-)
abhd15a LOC108278383 coding downstream 37339 11235640 ~ 11243992 (-)
trarg1a tusc5 coding downstream 95812 11174002 ~ 11185519 (-)
tmem199 tmem199,LOC107592604 coding downstream 213103 11064601 ~ 11068228 (-)
gemin4 gemin4 coding downstream 258001 11017152 ~ 11023330 (-)
vps53 vps53,LOC107744780,LOC107664930,LOC107743667 coding upstream 2982 11287605 ~ 11308511 (-)
mnta mnt,LOC105027537 coding upstream 34652 11319275 ~ 11336278 (-)
mettl16 mettl16,LOC107585611,LOC102789714 coding upstream 53860 11338483 ~ 11372787 (-)
pafah1b1a lis1a,pafah1b1,LOC108431306,LOC103047044,LOC102225619 coding upstream 90080 11374703 ~ 11402484 (-)
cluha cluh,cluha,LOC107664929 coding upstream 118623 11403246 ~ 11422786 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding downstream 112663 11105571 ~ 11168668 (-)
G224086 NA non-coding downstream 211373 11069684 ~ 11069958 (-)
G223855 LOC108277744 non-coding downstream 519598 10756498 ~ 10761733 (-)
G223827 NA non-coding downstream 644537 10636156 ~ 10636794 (-)
G223808 NA non-coding downstream 669483 10560426 ~ 10611848 (-)
G224358 NA non-coding upstream 110097 11394720 ~ 11397828 (-)
G224360 NA non-coding upstream 138938 11423561 ~ 11423868 (-)
G224361 NA non-coding upstream 140006 11424629 ~ 11424859 (-)
G224370 NA non-coding upstream 179625 11464248 ~ 11464691 (-)
G224371 NA non-coding upstream 181330 11465953 ~ 11466243 (-)
aipl1 aipl1,LOC106612843 other downstream 60675 11188250 ~ 11220656 (-)
appbp2 appbp2 other downstream 559998 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 968815 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 1568272 9677259 ~ 9713059 (-)
G222809 oaf other downstream 2334432 8941018 ~ 8946899 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1104243 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1150583 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 1636340 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 1656287 12940910 ~ 13007559 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other upstream 1785513 13070136 ~ 13080860 (-)

Expression


Co-expression Network